Csor.00g017410 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGTTCAATAGAATCAATGAACCTAAACCCATCTTCTTCTTCTTGTTTTTCATTATCTTCATATTGTCCTCTGACAACACTAGGCGCTGCTCATCTGCTGAATCCGGCTCCGGCCATGCACATACTCAGGTAAATTTATTTTAGTTCCAATATTATAATGGAGGATTCATCATCTTCCTCGTATATTTTCTTACAAATACCTATTTTTGCACCCAAAAAATTCTAATGCATTATACTATGTCAGCCCATCTCTAATCTTGAAGATCAAGAGTTGACTTTGTCAAGAAGAGGATTGAGTAGGCTGGGATCGTCGCCACCAAACTGCGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGCCAGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA ATGAAGTTCAATAGAATCAATGAACCTAAACCCATCTTCTTCTTCTTGTTTTTCATTATCTTCATATTGTCCTCTGACAACACTAGGCGCTGCTCATCTGCTGAATCCGGCTCCGGCCATGCACATACTCAGCCCATCTCTAATCTTGAAGATCAAGAGTTGACTTTGTCAAGAAGAGGATTGAGTAGGCTGGGATCGTCGCCACCAAACTGCGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGCCAGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA ATGAAGTTCAATAGAATCAATGAACCTAAACCCATCTTCTTCTTCTTGTTTTTCATTATCTTCATATTGTCCTCTGACAACACTAGGCGCTGCTCATCTGCTGAATCCGGCTCCGGCCATGCACATACTCAGCCCATCTCTAATCTTGAAGATCAAGAGTTGACTTTGTCAAGAAGAGGATTGAGTAGGCTGGGATCGTCGCCACCAAACTGCGACTCAAAGTGTGGGAGCTGCACGCCCTGTACTACGGTTCTTGTGTCGGTGCCGCCAGGACCTTCAGGCGTCGGTGATGATTTCCCGAAAGTCTGGAGATGCAAATGTGGGAACAAGCTCTACATGCCCTGA MKFNRINEPKPIFFFLFFIIFILSSDNTRRCSSAESGSGHAHTQPISNLEDQELTLSRRGLSRLGSSPPNCDSKCGSCTPCTTVLVSVPPGPSGVGDDFPKVWRCKCGNKLYMP Homology
BLAST of Csor.00g017410 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 2.5e-16 Identity = 37/57 (64.91%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of Csor.00g017410 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 2.2e-12 Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of Csor.00g017410 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 4.5e-10 Identity = 38/103 (36.89%), Postives = 51/103 (49.51%), Query Frame = 0
BLAST of Csor.00g017410 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 3.1e-06 Identity = 33/99 (33.33%), Postives = 46/99 (46.46%), Query Frame = 0
BLAST of Csor.00g017410 vs. ExPASy Swiss-Prot
Match: Q8S8I4 (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 2.2e-04 Identity = 32/105 (30.48%), Postives = 44/105 (41.90%), Query Frame = 0
BLAST of Csor.00g017410 vs. NCBI nr
Match: KAG6583319.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 243 bits (621), Expect = 2.31e-81 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of Csor.00g017410 vs. NCBI nr
Match: KAG6583317.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590332.1 EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 229 bits (584), Expect = 9.57e-76 Identity = 110/114 (96.49%), Postives = 110/114 (96.49%), Query Frame = 0
BLAST of Csor.00g017410 vs. NCBI nr
Match: KAG6583316.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590333.1 EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 226 bits (576), Expect = 1.59e-74 Identity = 109/114 (95.61%), Postives = 109/114 (95.61%), Query Frame = 0
BLAST of Csor.00g017410 vs. NCBI nr
Match: KAG6583645.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 211 bits (537), Expect = 1.42e-68 Identity = 99/114 (86.84%), Postives = 103/114 (90.35%), Query Frame = 0
BLAST of Csor.00g017410 vs. NCBI nr
Match: KAG6583315.1 (EPIDERMAL PATTERNING FACTOR-like protein 6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 207 bits (527), Expect = 4.75e-67 Identity = 98/114 (85.96%), Postives = 103/114 (90.35%), Query Frame = 0
BLAST of Csor.00g017410 vs. ExPASy TrEMBL
Match: A0A0A0LXR9 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G533610 PE=3 SV=1) HSP 1 Score: 112 bits (280), Expect = 2.51e-29 Identity = 69/149 (46.31%), Postives = 78/149 (52.35%), Query Frame = 0
BLAST of Csor.00g017410 vs. ExPASy TrEMBL
Match: A0A5D3BE35 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00580 PE=3 SV=1) HSP 1 Score: 105 bits (262), Expect = 4.55e-27 Identity = 52/92 (56.52%), Postives = 59/92 (64.13%), Query Frame = 0
BLAST of Csor.00g017410 vs. ExPASy TrEMBL
Match: A0A6J1G964 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452110 PE=3 SV=1) HSP 1 Score: 101 bits (252), Expect = 5.26e-25 Identity = 60/132 (45.45%), Postives = 73/132 (55.30%), Query Frame = 0
BLAST of Csor.00g017410 vs. ExPASy TrEMBL
Match: A0A6J1KAS0 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111492606 PE=3 SV=1) HSP 1 Score: 101 bits (251), Expect = 7.05e-25 Identity = 60/132 (45.45%), Postives = 73/132 (55.30%), Query Frame = 0
BLAST of Csor.00g017410 vs. ExPASy TrEMBL
Match: A0A6J1G961 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452110 PE=3 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 2.54e-23 Identity = 59/134 (44.03%), Postives = 70/134 (52.24%), Query Frame = 0
BLAST of Csor.00g017410 vs. TAIR 10
Match: AT2G30370.1 (allergen-related ) HSP 1 Score: 86.3 bits (212), Expect = 1.8e-17 Identity = 37/57 (64.91%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of Csor.00g017410 vs. TAIR 10
Match: AT2G30370.2 (allergen-related ) HSP 1 Score: 86.3 bits (212), Expect = 1.8e-17 Identity = 37/57 (64.91%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of Csor.00g017410 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 73.2 bits (178), Expect = 1.5e-13 Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of Csor.00g017410 vs. TAIR 10
Match: AT3G22820.1 (allergen-related ) HSP 1 Score: 65.5 bits (158), Expect = 3.2e-11 Identity = 38/103 (36.89%), Postives = 51/103 (49.51%), Query Frame = 0
BLAST of Csor.00g017410 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). ) HSP 1 Score: 52.8 bits (125), Expect = 2.2e-07 Identity = 33/99 (33.33%), Postives = 46/99 (46.46%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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