Csor.00g004800.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g004800.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	arabinogalactan peptide 23-like
Location	Csor_Chr08: 3195997 .. 3198208 (+)
Sequence length	336
RNA-Seq Expression	Csor.00g004800.m01
Synteny	Csor.00g004800.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAAGAAGATCGCCTGCGCCGCCCTCTTCGCCGCCGCTACTGTCACAGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCCGCCGCCGCTCCAGGACCGAGCAGCGCCGCCTCCGCCGCTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTTCTACTTCAACTGAATTTCTTTTATTTTTTTTTTTAAATTTATTTTATCGATTTCCATGGACGTGTGATGTGAGGCAAAGTTGAAAAATAAAAAAGAATTTTGATTCATTGTTATCTTACAATTTTGCCCTTATATTTTAATTGCTTGATTAAATAAAATACGATTAAAATATTAAATTCATTAAATATTTTTAGATTGGTATTTGTTTAATAAATATAATAATATGGTTATATATTGGTTAGAATTATTTTTGTTTATTTTTTTTAATTAAAATTAATTAATTTATGGATATATTAATAATATGAAAAAATAAATAATTATAATTCTAATGATTTTTATTATATTTATTAGGAAAAAACAAATTAAAAATAAGATACAGGTGATAATTAAATAAATATATATTTAAAGTGAGATTTTTTTTCATCTTTTATTTATATTTTATTGTTAATTTTAGCAAAAAGTAGTCTCAAAATTTCATAATATCACTAATTTCAAAACAAATTAAATTTAATTATTGCAATAATTAATTTTAACGAATATGATAATATATATTTTTTATTTGTTGCCATTTCAAATGCTTATTTAAATATGGGTGAAATTTAATAAAATTTAAAAGTTTTGGACTTTTTTAAGAAATTAAATAGAAAATAAATATTTTTTTTCCAAATAAAAAAATAAAAATTAAATGAACCGAATTTTGGATTAAAAAAGCGGAAAAATAAATTTATAAAAGGAAAGTGGTTTTAAAAGGCATCATTCCTTGAAATTCAAATTTCACTATTTAAATTTAAAAAAAACAAAAACATCACTTTCCACGTGTCGACCAAAGAAGAAGTATTACACGTAACAAAGAGTAGAATCGTAACACGTAAGCCCCAGTCTCCAAACTTTCTGTTGAGATCCTCTACAACCAGAACCACGAGAACTCGCCACTACCTTCATTCTCATTGGTCAATTCCACGTTCCTTTTCTGACTTTTCCTCTTCGCTCCACTCAACACTCCACGTGTAGCCCACAACCAGCCCTTAATAATTCGTACTGTTTTTTTTTTTTATTATTTATTTATTATTTATTTTGTTGGCCCACACCGGACCCTGAATTTCTCTATAAATTGGAAATTCCATTTTATGGGATTCACCTTCGAAGCCCCGCTTCCTTTCTGATCGTTGTAGGGTTAGTTTCTTCAATTTCTTCTTCACTAATTTATTTTTTGCTTACTTTGTTCCTCGATTGCGAGTTTTTGTTCTGTTTTTGTTCTCTGATTTACTGTTGTTCTTCTGTTTTCCCCTTTTGTTCTTGTTGATTTTCAGTGGGGAGAGGGGGAGCGAAGAATCGTAAGTTCGCTTGAAAATTTTATGGCCTTTTTTCTATAATCATCGATACACAGCGGTCGTATAGAGCTTTCCCTCCTACACTCAACAACGAACAGGTTAGAGCTTAGAATTTAAGGCTTCGTTTCGTTTCTAGGAATTGATTGATTGTTTTTGGAGAAAACGATTGTGTTTTTGAAATCGTAGATGACGTTTTCTTGTGGTTAGGTTAATCACCCTGCTATGTGAGGGGGATTGTTCATCAAACTTGTGGATGAAAGTAATCACGATTGCTTTTCTGAAGTTTGTAGACTAGGTTTTTTCATGTATGATTTTGTCTTGTTGAGGAACTGTACTTTTTTTTTTTTTTGCCTCTAATTCGTTATCATGTTCTTTTGCAAATTAATCCCTCTTGCTTGAACAAGGTTTGCTTAGCCTGGAATTTTGGTTTGAACCCCATTAGATTGGAGTTTTGTTTCAGAACATAATTATGGTGTATGAGTTGGACCTGGCACTGGCAAGTATACTTTGAAAAAGAATTTCGAGCTAGTTTGTTTCTCTTAGTTTACCTTAGGGTCAAAACTTCGTGGAATGGTTCAGGACTTCTTGTTATGGATTTTCTCATCTCATGAGAGCTTAGTGGAACTTCAAAGTGGAAGGGCAATCGATATTTCATTAGGGCCAGAGATAAATTGCAATGATTATGCTTGGTTAGTTCATTGA

mRNA sequence

ATGGAAATGAAGAAGATCGCCTGCGCCGCCCTCTTCGCCGCCGCTACTGTCACAGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCCGCCGCCGCTCCAGGACCGAGCAGCGCCGCCTCCGCCGCTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGCTTCCCCGCTTCCTTTCTGATCGTTGTAGGTGGGGAGAGGGGGAGCGAAGAATCGACTTCTTGTTATGGATTTTCTCATCTCATGAGAGCTTAGTGGAACTTCAAAGTGGAAGGGCAATCGATATTTCATTAGGGCCAGAGATAAATTGCAATGATTATGCTTGGTTAGTTCATTGA

Coding sequence (CDS)

ATGGAAATGAAGAAGATCGCCTGCGCCGCCCTCTTCGCCGCCGCTACTGTCACAGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCCGCCGCCGCTCCAGGACCGAGCAGCGCCGCCTCCGCCGCTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGCTTCCCCGCTTCCTTTCTGATCGTTGTAGGTGGGGAGAGGGGGAGCGAAGAATCGACTTCTTGTTATGGATTTTCTCATCTCATGAGAGCTTAGTGGAACTTCAAAGTGGAAGGGCAATCGATATTTCATTAGGGCCAGAGATAAATTGCAATGATTATGCTTGGTTAGTTCATTGA

Protein sequence

MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLPRFLSDRCRWGEGERRIDFLLWIFSSHESLVELQSGRAIDISLGPEINCNDYAWLVH

Homology

[Close]

BLAST of Csor.00g004800.m01 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-10
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLPRFLS 60
          MEMKKIAC  LFAAA++TAV+A++E  +P  APGP+SAASAALPALGSLVGASL    S
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFS 57

[Close]

BLAST of Csor.00g004800.m01 vs. NCBI nr
Match: KAG6593311.1 (hypothetical protein SDJN03_12787, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211 bits (537), Expect = 1.21e-68
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLPRFLSD 60
           MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLPRFLSD
Sbjct: 1   MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLPRFLSD 60

Query: 61  RCRWGEGERRIDFLLWIFSSHESLVELQSGRAIDISLGPEINCNDYAWLVH 111
           RCRWGEGERRIDFLLWIFSSHESLVELQSGRAIDISLGPEINCNDYAWLVH
Sbjct: 61  RCRWGEGERRIDFLLWIFSSHESLVELQSGRAIDISLGPEINCNDYAWLVH 111

[Close]

BLAST of Csor.00g004800.m01 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.9 bits (224), Expect = 1.48e-21
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLPRFLS 59
          MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASL  F++
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA 59

[Close]

BLAST of Csor.00g004800.m01 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 90.9 bits (224), Expect = 1.48e-21
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLPRFLS 59
          MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASL  F++
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA 59

[Close]

BLAST of Csor.00g004800.m01 vs. NCBI nr
Match: XP_022960230.1 (arabinogalactan peptide 23-like [Cucurbita moschata])

HSP 1 Score: 89.7 bits (221), Expect = 4.23e-21
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLPRFLS 59
          MEMKKIACAALFAAAT+TAVVASDESLSPAAAPGPSSAASAALPALGSLVGASL  F++
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA 59

[Close]

BLAST of Csor.00g004800.m01 vs. NCBI nr
Match: XP_022933008.1 (arabinogalactan peptide 23-like [Cucurbita moschata] >KAG7025100.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.4 bits (215), Expect = 3.46e-20
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASL 54
          MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASA LPALGSLVGASL
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASL 54

[Close]

BLAST of Csor.00g004800.m01 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.17e-22
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLPRFLS 59
          MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASL  F++
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA 59

[Close]

BLAST of Csor.00g004800.m01 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.05e-21
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLPRFLS 59
          MEMKKIACAALFAAAT+TAVVASDESLSPAAAPGPSSAASAALPALGSLVGASL  F++
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA 59

[Close]

BLAST of Csor.00g004800.m01 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.67e-20
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASL 54
          MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASA LPALGSLVGASL
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASL 54

[Close]

BLAST of Csor.00g004800.m01 vs. ExPASy TrEMBL
Match: A0A6J1IYE9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.40e-18
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLPRFLS 59
          MEMK IAC ALF AA VTAVVASDES SPAAAPGPSSAASAALPALGSL+GASL  F++
Sbjct: 1  MEMKNIACTALFTAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVA 59

[Close]

BLAST of Csor.00g004800.m01 vs. ExPASy TrEMBL
Match: A0A1S3CDX5 (arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.23e-14
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLV 50
          MEMKKIACAALFAAA V+A VA+DES+SPAAAPGPSSAASAALP LG+ V
Sbjct: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVLGASV 50

[Close]

BLAST of Csor.00g004800.m01 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-11
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLPRFLS 60
          MEMKKIAC  LFAAA++TAV+A++E  +P  APGP+SAASAALPALGSLVGASL    S
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFS 57

[Close]

BLAST of Csor.00g004800.m01 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGP-SSAASAALPALGSLVGASL 55
          MEMKKIAC  +FAAA++TAV+A++     A APGP +S AS A+PALGSLVGASL
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAAEVG---APAPGPAASGASVAVPALGSLVGASL 52

The following BLAST results are available for this feature:

BLAST of Csor.00g004800.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	2.6e-10	71.19	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Csor.00g004800.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593311.1	1.21e-68	100.00	hypothetical protein SDJN03_12787, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7025661.1	1.48e-21	93.22	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023004714.1	1.48e-21	93.22	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
XP_022960230.1	4.23e-21	91.53	arabinogalactan peptide 23-like [Cucurbita moschata]	[more]
XP_022933008.1	3.46e-20	98.15	arabinogalactan peptide 23-like [Cucurbita moschata] >KAG7025100.1 Arabinogalact...	[more]

BLAST of Csor.00g004800.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KX42	7.17e-22	93.22	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4...	[more]
A0A6J1H8I1	2.05e-21	91.53	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE...	[more]
A0A6J1F3F5	1.67e-20	98.15	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE...	[more]
A0A6J1IYE9	6.40e-18	83.05	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4...	[more]
A0A1S3CDX5	5.23e-14	84.00	arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=...	[more]

BLAST of Csor.00g004800.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	1.8e-11	71.19	arabinogalactan protein 23	[more]
AT2G41905.1	2.8e-07	65.45	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672:SF12	BNACNNG40600D PROTEIN	coord: 1..56
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..56

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g004800	Csor.00g004800	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g004800.m01.CDS04	Csor.00g004800.m01.CDS04	CDS
Csor.00g004800.m01.CDS03	Csor.00g004800.m01.CDS03	CDS
Csor.00g004800.m01.CDS02	Csor.00g004800.m01.CDS02	CDS
Csor.00g004800.m01.CDS01	Csor.00g004800.m01.CDS01	CDS

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g004800.m01.initial01	Csor.00g004800.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g004800.m01.start_codon01	Csor.00g004800.m01.start_codon01	start_codon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g004800.m01.intron03	Csor.00g004800.m01.intron03	intron
Csor.00g004800.m01.intron02	Csor.00g004800.m01.intron02	intron
Csor.00g004800.m01.intron01	Csor.00g004800.m01.intron01	intron

The following internal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g004800.m01.internal02	Csor.00g004800.m01.internal02	internal
Csor.00g004800.m01.internal01	Csor.00g004800.m01.internal01	internal

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g004800.m01.terminal01	Csor.00g004800.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g004800.m01.stop_codon01	Csor.00g004800.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g004800.m01	Csor.00g004800.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane