Csor.00g004800.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
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Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAATGAAGAAGATCGCCTGCGCCGCCCTCTTCGCCGCCGCTACTGTCACAGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCCGCCGCCGCTCCAGGACCGAGCAGCGCCGCCTCCGCCGCTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTTCTACTTCAACTGAATTTCTTTTATTTTTTTTTTTAAATTTATTTTATCGATTTCCATGGACGTGTGATGTGAGGCAAAGTTGAAAAATAAAAAAGAATTTTGATTCATTGTTATCTTACAATTTTGCCCTTATATTTTAATTGCTTGATTAAATAAAATACGATTAAAATATTAAATTCATTAAATATTTTTAGATTGGTATTTGTTTAATAAATATAATAATATGGTTATATATTGGTTAGAATTATTTTTGTTTATTTTTTTTAATTAAAATTAATTAATTTATGGATATATTAATAATATGAAAAAATAAATAATTATAATTCTAATGATTTTTATTATATTTATTAGGAAAAAACAAATTAAAAATAAGATACAGGTGATAATTAAATAAATATATATTTAAAGTGAGATTTTTTTTCATCTTTTATTTATATTTTATTGTTAATTTTAGCAAAAAGTAGTCTCAAAATTTCATAATATCACTAATTTCAAAACAAATTAAATTTAATTATTGCAATAATTAATTTTAACGAATATGATAATATATATTTTTTATTTGTTGCCATTTCAAATGCTTATTTAAATATGGGTGAAATTTAATAAAATTTAAAAGTTTTGGACTTTTTTAAGAAATTAAATAGAAAATAAATATTTTTTTTCCAAATAAAAAAATAAAAATTAAATGAACCGAATTTTGGATTAAAAAAGCGGAAAAATAAATTTATAAAAGGAAAGTGGTTTTAAAAGGCATCATTCCTTGAAATTCAAATTTCACTATTTAAATTTAAAAAAAACAAAAACATCACTTTCCACGTGTCGACCAAAGAAGAAGTATTACACGTAACAAAGAGTAGAATCGTAACACGTAAGCCCCAGTCTCCAAACTTTCTGTTGAGATCCTCTACAACCAGAACCACGAGAACTCGCCACTACCTTCATTCTCATTGGTCAATTCCACGTTCCTTTTCTGACTTTTCCTCTTCGCTCCACTCAACACTCCACGTGTAGCCCACAACCAGCCCTTAATAATTCGTACTGTTTTTTTTTTTTATTATTTATTTATTATTTATTTTGTTGGCCCACACCGGACCCTGAATTTCTCTATAAATTGGAAATTCCATTTTATGGGATTCACCTTCGAAGCCCCGCTTCCTTTCTGATCGTTGTAGGGTTAGTTTCTTCAATTTCTTCTTCACTAATTTATTTTTTGCTTACTTTGTTCCTCGATTGCGAGTTTTTGTTCTGTTTTTGTTCTCTGATTTACTGTTGTTCTTCTGTTTTCCCCTTTTGTTCTTGTTGATTTTCAGTGGGGAGAGGGGGAGCGAAGAATCGTAAGTTCGCTTGAAAATTTTATGGCCTTTTTTCTATAATCATCGATACACAGCGGTCGTATAGAGCTTTCCCTCCTACACTCAACAACGAACAGGTTAGAGCTTAGAATTTAAGGCTTCGTTTCGTTTCTAGGAATTGATTGATTGTTTTTGGAGAAAACGATTGTGTTTTTGAAATCGTAGATGACGTTTTCTTGTGGTTAGGTTAATCACCCTGCTATGTGAGGGGGATTGTTCATCAAACTTGTGGATGAAAGTAATCACGATTGCTTTTCTGAAGTTTGTAGACTAGGTTTTTTCATGTATGATTTTGTCTTGTTGAGGAACTGTACTTTTTTTTTTTTTTGCCTCTAATTCGTTATCATGTTCTTTTGCAAATTAATCCCTCTTGCTTGAACAAGGTTTGCTTAGCCTGGAATTTTGGTTTGAACCCCATTAGATTGGAGTTTTGTTTCAGAACATAATTATGGTGTATGAGTTGGACCTGGCACTGGCAAGTATACTTTGAAAAAGAATTTCGAGCTAGTTTGTTTCTCTTAGTTTACCTTAGGGTCAAAACTTCGTGGAATGGTTCAGGACTTCTTGTTATGGATTTTCTCATCTCATGAGAGCTTAGTGGAACTTCAAAGTGGAAGGGCAATCGATATTTCATTAGGGCCAGAGATAAATTGCAATGATTATGCTTGGTTAGTTCATTGAATGGAAATGAAGAAGATCGCCTGCGCCGCCCTCTTCGCCGCCGCTACTGTCACAGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCCGCCGCCGCTCCAGGACCGAGCAGCGCCGCCTCCGCCGCTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGCTTCCCCGCTTCCTTTCTGATCGTTGTAGGTGGGGAGAGGGGGAGCGAAGAATCGACTTCTTGTTATGGATTTTCTCATCTCATGAGAGCTTAGTGGAACTTCAAAGTGGAAGGGCAATCGATATTTCATTAGGGCCAGAGATAAATTGCAATGATTATGCTTGGTTAGTTCATTGA ATGGAAATGAAGAAGATCGCCTGCGCCGCCCTCTTCGCCGCCGCTACTGTCACAGCAGTCGTGGCCTCCGATGAGTCTCTCTCTCCCGCCGCCGCTCCAGGACCGAGCAGCGCCGCCTCCGCCGCTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGCTTCCCCGCTTCCTTTCTGATCGTTGTAGGTGGGGAGAGGGGGAGCGAAGAATCGACTTCTTGTTATGGATTTTCTCATCTCATGAGAGCTTAGTGGAACTTCAAAGTGGAAGGGCAATCGATATTTCATTAGGGCCAGAGATAAATTGCAATGATTATGCTTGGTTAGTTCATTGA MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLPRFLSDRCRWGEGERRIDFLLWIFSSHESLVELQSGRAIDISLGPEINCNDYAWLVH Homology
BLAST of Csor.00g004800.m01 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2) HSP 1 Score: 66.2 bits (160), Expect = 2.6e-10 Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0
BLAST of Csor.00g004800.m01 vs. NCBI nr
Match: KAG6593311.1 (hypothetical protein SDJN03_12787, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 211 bits (537), Expect = 1.21e-68 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0
BLAST of Csor.00g004800.m01 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 90.9 bits (224), Expect = 1.48e-21 Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 0
BLAST of Csor.00g004800.m01 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima]) HSP 1 Score: 90.9 bits (224), Expect = 1.48e-21 Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 0
BLAST of Csor.00g004800.m01 vs. NCBI nr
Match: XP_022960230.1 (arabinogalactan peptide 23-like [Cucurbita moschata]) HSP 1 Score: 89.7 bits (221), Expect = 4.23e-21 Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 0
BLAST of Csor.00g004800.m01 vs. NCBI nr
Match: XP_022933008.1 (arabinogalactan peptide 23-like [Cucurbita moschata] >KAG7025100.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 87.4 bits (215), Expect = 3.46e-20 Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0
BLAST of Csor.00g004800.m01 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 7.17e-22 Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 0
BLAST of Csor.00g004800.m01 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 2.05e-21 Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 0
BLAST of Csor.00g004800.m01 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 1.67e-20 Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0
BLAST of Csor.00g004800.m01 vs. ExPASy TrEMBL
Match: A0A6J1IYE9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 6.40e-18 Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0
BLAST of Csor.00g004800.m01 vs. ExPASy TrEMBL
Match: A0A1S3CDX5 (arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 5.23e-14 Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 0
BLAST of Csor.00g004800.m01 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 ) HSP 1 Score: 66.2 bits (160), Expect = 1.8e-11 Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0
BLAST of Csor.00g004800.m01 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 52.4 bits (124), Expect = 2.8e-07 Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following initial feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following internal feature(s) are a part of this mRNA:
The following terminal feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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