Csor.00g002660 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g002660
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr17: 9917595 .. 9917873 (-)
RNA-Seq Expression	Csor.00g002660
Synteny	Csor.00g002660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTTTTTGTGTTCTTTTTTTATGTCATTCCATTAGTTGGATATAGGGTTTGGACCACTGGGAACTTCATGTGCTTCGGCTCCGAACTCTCCGGCCATGGCACGAGAGGATCGAGGTTGAGATTTCTTCGGATGGAAGGCGGTGGAGGTGGCGGTAGAGAGACGGCGGTGGGTGTCGGCCGCCATGGAACGAGGCGAAAGAGGTGGAGGAGAGGAAATGAGGGTTATAAGGAGGAGGAAGGAAAAGAAAAGAAGGAAAAGGAGAAAGTGAGATGA

mRNA sequence

ATGTTTCTTTTTGTGTTCTTTTTTTATGTCATTCCATTAGTTGGATATAGGGTTTGGACCACTGGGAACTTCATGTGCTTCGGCTCCGAACTCTCCGGCCATGGCACGAGAGGATCGAGGTTGAGATTTCTTCGGATGGAAGGCGGTGGAGGTGGCGGTAGAGAGACGGCGGTGGGTGTCGGCCGCCATGGAACGAGGCGAAAGAGGTGGAGGAGAGGAAATGAGGGTTATAAGGAGGAGGAAGGAAAAGAAAAGAAGGAAAAGGAGAAAGTGAGATGA

Coding sequence (CDS)

ATGTTTCTTTTTGTGTTCTTTTTTTATGTCATTCCATTAGTTGGATATAGGGTTTGGACCACTGGGAACTTCATGTGCTTCGGCTCCGAACTCTCCGGCCATGGCACGAGAGGATCGAGGTTGAGATTTCTTCGGATGGAAGGCGGTGGAGGTGGCGGTAGAGAGACGGCGGTGGGTGTCGGCCGCCATGGAACGAGGCGAAAGAGGTGGAGGAGAGGAAATGAGGGTTATAAGGAGGAGGAAGGAAAAGAAAAGAAGGAAAAGGAGAAAGTGAGATGA

Protein sequence

MFLFVFFFYVIPLVGYRVWTTGNFMCFGSELSGHGTRGSRLRFLRMEGGGGGGRETAVGVGRHGTRRKRWRRGNEGYKEEEGKEKKEKEKVR

Homology

[Close]

BLAST of Csor.00g002660 vs. NCBI nr
Match: KAG6575977.1 (hypothetical protein SDJN03_26616, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175 bits (443), Expect = 6.65e-55
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MFLFVFFFYVIPLVGYRVWTTGNFMCFGSELSGHGTRGSRLRFLRMEGGGGGGRETAVGV 60
          MFLFVFFFYVIPLVGYRVWTTGNFMCFGSELSGHGTRGSRLRFLRMEGGGGGGRETAVGV
Sbjct: 1  MFLFVFFFYVIPLVGYRVWTTGNFMCFGSELSGHGTRGSRLRFLRMEGGGGGGRETAVGV 60

Query: 61 GRHGTRRKRWRRGNEGYKEEEGKEKKEKEKVR 92
          GRHGTRRKRWRRGNEGYKEEEGKEKKEKEKVR
Sbjct: 61 GRHGTRRKRWRRGNEGYKEEEGKEKKEKEKVR 92

The following BLAST results are available for this feature:

BLAST of Csor.00g002660 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g002660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575977.1	6.65e-55	100.00	hypothetical protein SDJN03_26616, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g002660 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g002660 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g002660.m01	Csor.00g002660.m01	mRNA