CsaV3_7G032280.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G032280.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 20435213 .. 20435682 (+)
Sequence length387
RNA-Seq ExpressionCsaV3_7G032280.1
SyntenyCsaV3_7G032280.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGTAGCACATTAAAACCTTGAAATAACGGAATAAGGGGAAAGTTTCGAAGCTTCCACAGCGGTGGTTGAACTCGCCAAAGTTGGAAATCCACTGTACAGAGAAGAAAGTAAAAATAAATTTGAGCAATTCGGATCCTTACCGGACCCGACCCGCCGTAGTTCTCAGGTCGACGGCGTTCATCCTTCTCGGATCACAGCTTCAGAATCGTCCAGCATCTATCGGCAATTGGCAACTACGCCCGAGATCTCACCTTCTTCATCAATGTTCTGTAATTCCCCTCAATTCCCTCTCTTTTCTCTACTTTAACTCTTCTCCAGGGTTTATTTTTCTGTTGTCATTTTCTATCCGGGAATTACTTTGAACTCCCTTTCGCATATAATTGCGTTCCGGGAAGGGGAAAGTTGACGAACGAGATGAATGGGGTTTGTTTCCGAGTTTATAATTTGGGTAATTCGAGGATTTGA

mRNA sequence

ATGGGCGGGAAAGTTTCGAAGCTTCCACAGCGGTGGTTGAACTCGCCAAAGTTGGAAATCCACTGTACAGAGAAGAAAGTAAAAATAAATTTGAGCAATTCGGATCCTTACCGGACCCGACCCGCCGTAGTTCTCAGGTCGACGGCGTTCATCCTTCTCGGATCACAGCTTCAGAATCGTCCAGCATCTATCGGCAATTGGCAACTACGCCCGAGATCTCACCTTCTTCATCAATGTTCTGGTTTATTTTTCTGTTGTCATTTTCTATCCGGGAATTACTTTGAACTCCCTTTCGCATATAATTGCGTTCCGGGAAGGGGAAAGTTGACGAACGAGATGAATGGGGTTTGTTTCCGAGTTTATAATTTGGGTAATTCGAGGATTTGA

Coding sequence (CDS)

ATGGGCGGGAAAGTTTCGAAGCTTCCACAGCGGTGGTTGAACTCGCCAAAGTTGGAAATCCACTGTACAGAGAAGAAAGTAAAAATAAATTTGAGCAATTCGGATCCTTACCGGACCCGACCCGCCGTAGTTCTCAGGTCGACGGCGTTCATCCTTCTCGGATCACAGCTTCAGAATCGTCCAGCATCTATCGGCAATTGGCAACTACGCCCGAGATCTCACCTTCTTCATCAATGTTCTGGTTTATTTTTCTGTTGTCATTTTCTATCCGGGAATTACTTTGAACTCCCTTTCGCATATAATTGCGTTCCGGGAAGGGGAAAGTTGACGAACGAGATGAATGGGGTTTGTTTCCGAGTTTATAATTTGGGTAATTCGAGGATTTGA

Protein sequence

MGGKVSKLPQRWLNSPKLEIHCTEKKVKINLSNSDPYRTRPAVVLRSTAFILLGSQLQNRPASIGNWQLRPRSHLLHQCSGLFFCCHFLSGNYFELPFAYNCVPGRGKLTNEMNGVCFRVYNLGNSRI*
Homology
[Close]
BLAST of CsaV3_7G032280.1 vs. NCBI nr
Match: KGN45258.1 (hypothetical protein Csa_016845 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 1.1e-70
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MGGKVSKLPQRWLNSPKLEIHCTEKKVKINLSNSDPYRTRPAVVLRSTAFILLGSQLQNR 60
           MGGKVSKLPQRWLNSPKLEIHCTEKKVKINLSNSDPYRTRPAVVLRSTAFILLGSQLQNR
Sbjct: 1   MGGKVSKLPQRWLNSPKLEIHCTEKKVKINLSNSDPYRTRPAVVLRSTAFILLGSQLQNR 60

Query: 61  PASIGNWQLRPRSHLLHQCSGLFFCCHFLSGNYFELPFAYNCVPGRGKLTNEMNGVCFRV 120
           PASIGNWQLRPRSHLLHQCSGLFFCCHFLSGNYFELPFAYNCVPGRGKLTNEMNGVCFRV
Sbjct: 61  PASIGNWQLRPRSHLLHQCSGLFFCCHFLSGNYFELPFAYNCVPGRGKLTNEMNGVCFRV 120

Query: 121 YNLGNSRI 129
           YNLGNSRI
Sbjct: 121 YNLGNSRI 128

[Close]
BLAST of CsaV3_7G032280.1 vs. ExPASy TrEMBL
Match: A0A0A0K6X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432400 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 5.4e-71
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MGGKVSKLPQRWLNSPKLEIHCTEKKVKINLSNSDPYRTRPAVVLRSTAFILLGSQLQNR 60
           MGGKVSKLPQRWLNSPKLEIHCTEKKVKINLSNSDPYRTRPAVVLRSTAFILLGSQLQNR
Sbjct: 1   MGGKVSKLPQRWLNSPKLEIHCTEKKVKINLSNSDPYRTRPAVVLRSTAFILLGSQLQNR 60

Query: 61  PASIGNWQLRPRSHLLHQCSGLFFCCHFLSGNYFELPFAYNCVPGRGKLTNEMNGVCFRV 120
           PASIGNWQLRPRSHLLHQCSGLFFCCHFLSGNYFELPFAYNCVPGRGKLTNEMNGVCFRV
Sbjct: 61  PASIGNWQLRPRSHLLHQCSGLFFCCHFLSGNYFELPFAYNCVPGRGKLTNEMNGVCFRV 120

Query: 121 YNLGNSRI 129
           YNLGNSRI
Sbjct: 121 YNLGNSRI 128

The following BLAST results are available for this feature:
BLAST of CsaV3_7G032280.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45258.11.1e-70100.00hypothetical protein Csa_016845 [Cucumis sativus][more]
BLAST of CsaV3_7G032280.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G032280.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6X35.4e-71100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432400 PE=4 SV=1[more]
BLAST of CsaV3_7G032280.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G032280CsaV3_7G032280gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G032280.1.exon1CsaV3_7G032280.1.exon1exon
CsaV3_7G032280.1.exon2CsaV3_7G032280.1.exon2exon
CsaV3_7G032280.1.exon3CsaV3_7G032280.1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G032280.1.cds1CsaV3_7G032280.1.cds1CDS
CsaV3_7G032280.1.cds2CsaV3_7G032280.1.cds2CDS
CsaV3_7G032280.1.cds3CsaV3_7G032280.1.cds3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G032280.1CsaV3_7G032280.1-proteinpolypeptide