CsaV3_7G000110.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G000110.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr7: 259831 .. 263354 (-)
Sequence length	783
RNA-Seq Expression	CsaV3_7G000110.1
Synteny	CsaV3_7G000110.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTTATTTCTCGGATTCTTGCTCTCCCTTCTCCTTCAATATGTGTGCAATGTCAATGGTGAGACAACAACAACGGTGAACGTCTGCAACATTGGTAATGGTCTTCTTCGATGACCTCCATTTCAAACTACTACATAAAAAAGAACTTTTTCGTCTTTTCGGAGGGAGATGGCTCTCTCTCTTATTTCCTCTCTGGCTACTCCCACTCAAACTTCTCCTGAATTTTCACCCGCCTACTCACTTTATCCAAGAAGAACAGCTTCATCTCCGAACACATGTCGTTCAACAAGAGAAAGATTTCAGTAATAGCATATGCATTTACTCCACCAAATCTTTCTTTACCCCAGGAAGATCTCCATATCATCTCAAACATATACTATTTCAACCTCTTCTATCTTCTTCCACTACTACCTCTTCATTTTCTTTCCTTGTTCTCCAAACAAGCAACATGGCTCATCTCCGACAACTACCCTGTACTTGCTCCATTGAAAAAAAGGATTTTGTGATTTCTATTGACAACCGATCCAGAGAGCTCAGGTTTCTCATAACAGAAATGGGCCCCTACAAATCCTACTCCATCTCTGTCACCCCAGAATCTTTTGACTGGCTTAGTTCTACTTTCAGTACTCTAATGGATACACCTAAAACGACAAGATTCTTTCTTGAAAAAAGATTTGAGGATAACTGCCTGTGGGTCCAAAAAACACACAACCGTAAAGGTTACTTGGCAGAAATCTTAAGAGTGGATGATCGGGGTAGGAAATCTTGCATCCTTATCCCTAAAGGATCTGAAAAACAAGGATGGGCTCAGTTTACAGACATGCTGACATTAAGGAAGGAAGCTGCTCAAAAAAGGAAGATGACAACAACTACTGAAGACAGAGGCAAAAAAGCTTCATCTTATAGCTCCTTATCTGAGTTAGACAGCCCACGCAAATCTTACACAAAAGTGCTGACAAACAGTAGCTCATCAGACTCTGGCTCTCCTAAAATTCTTCCTTCTAGTAACAAAAAAGAAGAGACTCCCACTGGGGCTTTTGACTCTCTCGACTGGACTAAAACAGTGGTGATCACTAGAAGATATTTTCATGACGACTGGAAGAAAATCATGGCGAAACTACAAGAACAGTTGGATCTCAACATCACTTACAAGCCCTTTCATGCAGAAAAGGTTGCAGTTACGATTGAAGATAAGAACTTAGTGAACCTCCTTTGTAAAAATAGAGGGTGGACTACGGTTGGAAAGTATTATGTCAAATTTGAGGCTTCGAACATTGCCAAACATGCTTCCCCAAAGTGTCTGCCAAGCTATGGTGGTTAGGTCAAATTCAAAGGTATTCCCCTTCATGCATGGAATTACTCGTGTTTTTATCAAATTGGAGAAGCATGTGGTGGGTTTGTTGAAGTCGTCAAAATTACCAAAGACAGACTCGATCTCTTTGAGGCAGATATCAAAATCAAATATAACCACTCGGGCTTCATTCCTACCTTTGTTAGGATTGCCGATGAGGATGGAAATCAATTTACAATTCAGACTGTTGTACAAGCTGAAGGGAAATGGCTCAAAGAAAGAAATCCCAGAATTCATGGTACATTCACAAATGAAGCAGCAAAAAATTTCAATGAATTCAAACAAGATTGTGAACAGTACCAGTTTATTGATAATATTGCAGTGCCGGCAAACTGGGCCTCACCGAAAAACATACAAGACGAAAGAAAAAAAAACGCATCAGAATAGTGACCGGCAAAAAACCATAAAAAAACAGGATGCAATGATGAAAATTTTAAATTATGACGGTGGAAGTGACAGTAGTGGGAGATTACAGGGAAGCTCTACTGACAAGATAAAGACACCAACTGACAGAAAAAAAAAGAGAGAAAATTATACAAAGGAGAAAGCTCCAACCAACGGTCTACTCAAAATTCAAAGAGAAAGGTTTCCTTCACTTCTCCAAAGAATAAAATATATTTCTTTGACCCTAGAAGTGTGCCCCTTAGGCCCATCAGAATAAGAAGCCCAGAAGAGAACAACCAGAAAGGAAGCCCAAAAAGCCCAGTCAATCTAAAAAAGAAAGGCAAACAGATCTACCGAGTAAAGACTCCAAAAGCAGCAATGGGCTTAGAAAAAACAAATACATAAGAAGAAAGGGGAAAACAGAGTCAAACAAAAAAAGAAATTTTCGATATGGAAGGGATAAACCTCACGGTAGACTTGGGCCATCTTTCCCCCAACACTGATGTTGCTATCTCAAGCCCAGAAAACATCACTCCAAATACTCATCTTTCTATAGCTCAATCGGAGATTGGCAATGACAACATTGGTCCATGTTGATCAGTGACAAGGAAGATGCCGAATTAAATGACACAGAAAAGATCAATGATGATGAAGCCTTTAAAAAGAAGCTTTTGGATTGGTTGAAAAACAACAACCTGAAGCTCACTACAAGCTCCTCTGCTGGTATTGTTAATGAAGATAGTGAGACTATTGGTGATGAGAATGTAATGATTCTGTATGAAAAAGGGGAAAAATAGTCTCCCATGAAAGTCTTATGTTGGAACATTAGAGGGTTGAGCTCTCCCTCAAAAAGAGCACAAATAAAAAATTTGCTTTCCCGTTACTATCAAAATTTGTGATTCTTGTGGAAACAAAACTGCAACATATCAACAAAAAAATTATTAAATCTCTTTGGAGCCCTATAAGTATTAAATGGCAATTCTCCCCTGCTGAAAATAGTTCGGGAGGTATTGTAATCATGTGGGATGACACAAGATATAAAGTGATTGACTTTCTTATGAAAAAATTCACTCTCTCTATTAACATTTCATATCCCAAAGATACAATAAACTCTCACTGGTGGCTAACAGCAGTCTATGGGCCATCGAAACGGGAAAATAGAGGAGATTTCTGGATGGAGCTTGAAGAGATTAAATCAACTTGCCTTCCAAGATGGCTTATGGGTGGGGACTTCAATATTGTCAGATGGCAATCGGAAACTACAGCAAAAAATATTGCAGTTCCCTGTATGAATTCTTCAATTCTTTCATTTCGGGATGCGATTTCTATTATCCCCCAATTTCAAATGCCAAATACACTTGGTCAAACCTCAAGGCTTGACAGATTCCTTTATACTCCAAATTGGGAATCTATTTTTGAACCCCACTTTTCAAGACTGCTCCTCAGAGAAACATCAGACCATTTTTCCATTACACTTGAGTCAAACAGCCTTAAGTGGGGCCCATCACCGTTCAGATTCACCAATACCTTTCTCAAAGAAGTTTCATTTAAACAAAACTTTGAGCATTGGTGGACAAACACTGCACAAGCCGGTCACCCTGGATATTCTTTTATGAGGAGACTCAAACAACTTTCTCAAACAATCAAGAGTTGGAGTAAAAGCATAAAAGACTCAATTGTTGAAGAAAGACAGGCTTTACTGAAAGAACTCGAGCACATTGACAATCTGAAAGCTAATAACTATCACATATATGCACATATCCAGCAAAACATCCATCAAAACTGA

mRNA sequence

ATGACTTTATTTCTCGGATTCTTGCTCTCCCTTCTCCTTCAATATGTGTGCAATGTCAATGGTGAGACAACAACAACGGTGAACGTCTGCAACATTGATACAATAAACTCTCACTGGTGGCTAACAGCAGTCTATGGGCCATCGAAACGGGAAAATAGAGGAGATTTCTGGATGGAGCTTGAAGAGATTAAATCAACTTGCCTTCCAAGATGGCTTATGGGTGGGGACTTCAATATTGTCAGATGGCAATCGGAAACTACAGCAAAAAATATTGCAGTTCCCTGTATGAATTCTTCAATTCTTTCATTTCGGGATGCGATTTCTATTATCCCCCAATTTCAAATGCCAAATACACTTGGTCAAACCTCAAGGCTTGACAGATTCCTTTATACTCCAAATTGGGAATCTATTTTTGAACCCCACTTTTCAAGACTGCTCCTCAGAGAAACATCAGACCATTTTTCCATTACACTTGAGTCAAACAGCCTTAAGTGGGGCCCATCACCGTTCAGATTCACCAATACCTTTCTCAAAGAAGTTTCATTTAAACAAAACTTTGAGCATTGGTGGACAAACACTGCACAAGCCGGTCACCCTGGATATTCTTTTATGAGGAGACTCAAACAACTTTCTCAAACAATCAAGAGTTGGAGTAAAAGCATAAAAGACTCAATTGTTGAAGAAAGACAGGCTTTACTGAAAGAACTCGAGCACATTGACAATCTGAAAGCTAATAACTATCACATATATGCACATATCCAGCAAAACATCCATCAAAACTGA

Coding sequence (CDS)

ATGACTTTATTTCTCGGATTCTTGCTCTCCCTTCTCCTTCAATATGTGTGCAATGTCAATGGTGAGACAACAACAACGGTGAACGTCTGCAACATTGATACAATAAACTCTCACTGGTGGCTAACAGCAGTCTATGGGCCATCGAAACGGGAAAATAGAGGAGATTTCTGGATGGAGCTTGAAGAGATTAAATCAACTTGCCTTCCAAGATGGCTTATGGGTGGGGACTTCAATATTGTCAGATGGCAATCGGAAACTACAGCAAAAAATATTGCAGTTCCCTGTATGAATTCTTCAATTCTTTCATTTCGGGATGCGATTTCTATTATCCCCCAATTTCAAATGCCAAATACACTTGGTCAAACCTCAAGGCTTGACAGATTCCTTTATACTCCAAATTGGGAATCTATTTTTGAACCCCACTTTTCAAGACTGCTCCTCAGAGAAACATCAGACCATTTTTCCATTACACTTGAGTCAAACAGCCTTAAGTGGGGCCCATCACCGTTCAGATTCACCAATACCTTTCTCAAAGAAGTTTCATTTAAACAAAACTTTGAGCATTGGTGGACAAACACTGCACAAGCCGGTCACCCTGGATATTCTTTTATGAGGAGACTCAAACAACTTTCTCAAACAATCAAGAGTTGGAGTAAAAGCATAAAAGACTCAATTGTTGAAGAAAGACAGGCTTTACTGAAAGAACTCGAGCACATTGACAATCTGAAAGCTAATAACTATCACATATATGCACATATCCAGCAAAACATCCATCAAAACTGA

Protein sequence

MTLFLGFLLSLLLQYVCNVNGETTTTVNVCNIDTINSHWWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNSSILSFRDAISIIPQFQMPNTLGQTSRLDRFLYTPNWESIFEPHFSRLLLRETSDHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWWTNTAQAGHPGYSFMRRLKQLSQTIKSWSKSIKDSIVEERQALLKELEHIDNLKANNYHIYAHIQQNIHQN*

Homology

[Close]

BLAST of CsaV3_7G000110.1 vs. NCBI nr
Match: KAE8645642.1 (hypothetical protein Csa_020231 [Cucumis sativus])

HSP 1 Score: 541.6 bits (1394), Expect = 3.8e-150
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MTLFLGFLLSLLLQYVCNVNGETTTTVNVCNIDTINSHWWLTAVYGPSKRENRGDFWMEL 60
           MTLFLGFLLSLLLQYVCNVNGETTTTVNVCNIDTINSHWWLTAVYGPSKRENRGDFWMEL
Sbjct: 1   MTLFLGFLLSLLLQYVCNVNGETTTTVNVCNIDTINSHWWLTAVYGPSKRENRGDFWMEL 60

Query: 61  EEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNSSILSFRDAISIIPQFQMPNTLG 120
           EEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNSSILSFRDAISIIPQFQMPNTLG
Sbjct: 61  EEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNSSILSFRDAISIIPQFQMPNTLG 120

Query: 121 QTSRLDRFLYTPNWESIFEPHFSRLLLRETSDHFSITLESNSLKWGPSPFRFTNTFLKEV 180
           QTSRLDRFLYTPNWESIFEPHFSRLLLRETSDHFSITLESNSLKWGPSPFRFTNTFLKEV
Sbjct: 121 QTSRLDRFLYTPNWESIFEPHFSRLLLRETSDHFSITLESNSLKWGPSPFRFTNTFLKEV 180

Query: 181 SFKQNFEHWWTNTAQAGHPGYSFMRRLKQLSQTIKSWSKSIKDSIVEERQALLKELEHID 240
           SFKQNFEHWWTNTAQAGHPGYSFMRRLKQLSQTIKSWSKSIKDSIVEERQALLKELEHID
Sbjct: 181 SFKQNFEHWWTNTAQAGHPGYSFMRRLKQLSQTIKSWSKSIKDSIVEERQALLKELEHID 240

Query: 241 NLKANNYHIYAHIQQNIHQN 261
           NLKANNYHIYAHIQQNIHQN
Sbjct: 241 NLKANNYHIYAHIQQNIHQN 260

[Close]

BLAST of CsaV3_7G000110.1 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 231.5 bits (589), Expect = 8.4e-57
Identity = 109/214 (50.93%), Postives = 146/214 (68.22%), Query Frame = 0


Query: 39  WWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNS 98
           WWL+A+YGP+KR+NR  FW ELE +KS CLP W++GGDFN++RW+ ETT KN A+  M  
Sbjct: 31  WWLSAIYGPAKRKNRPLFWEELEHLKSICLPTWILGGDFNVIRWKEETTTKNPALLSMR- 90

Query: 99  SILSFRDAISII------PQFQMPNTLGQT--SRLDRFLYTPNWESIFEPHFSRLLLRET 158
              SF    ++I       ++   N   Q   SRLDRFL+T  WE+IF  H S++L R T
Sbjct: 91  RFNSFISNCNLIDPPLSNAKYTWSNLRAQATLSRLDRFLFTSQWENIFPGHTSKVLTRTT 150

Query: 159 SDHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWWTNTAQAGHPGYSFMRRLKQL 218
           SDHF I LES+++ WGPSPFRFTN +LK+  +K+N E WW NT+Q G+ GYSFMRRLKQL
Sbjct: 151 SDHFPIVLESSTISWGPSPFRFTNAYLKDPDYKKNIEFWWGNTSQPGYAGYSFMRRLKQL 210

Query: 219 SQTIKSWSKSIKDSIVEERQALLKELEHIDNLKA 245
           +  IK+W +  K      ++A +KE++ ID L+A
Sbjct: 211 ALIIKTWGRDKKGKNEASKKACIKEIDQIDKLEA 243

[Close]

BLAST of CsaV3_7G000110.1 vs. NCBI nr
Match: TYK29577.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-54
Identity = 107/226 (47.35%), Postives = 146/226 (64.60%), Query Frame = 0


Query: 39  WWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNS 98
           WWL+A+YGP+KR+NR  FW ELE +KS C P W++GGDFN++RW+ ET+ KN A   M  
Sbjct: 235 WWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIRWKEETSTKNPASLSMKR 294

Query: 99  SILSFRDAISIIP-----QFQMPNTLGQT--SRLDRFLYTPNWESIFEPHFSRLLLRETS 158
                 +   I P     +F   N   Q   SRLDRFL++ +WE+IF  H S++L R TS
Sbjct: 295 FNTFISNCNLIDPPLTNAKFTWSNLRAQATLSRLDRFLFSTHWENIFPGHTSKVLTRTTS 354

Query: 159 DHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWWTNTAQAGHPGYSFMRRLKQLS 218
           DHF I LES+++ WGPSPFRFTN +LK+  +K+N E WW NT+Q G+ GYSFM RLKQL+
Sbjct: 355 DHFPIVLESSTISWGPSPFRFTNAYLKDPDYKKNIEFWWGNTSQPGYAGYSFMHRLKQLA 414

Query: 219 QTIKSWSKSIKDSIVEERQALLKELEHIDNLKANNYHIYAHIQQNI 258
             IK+W +  K      ++A +KE++ ID L+A       H ++ I
Sbjct: 415 LKIKAWGREKKGKNEASKKAWIKEIDLIDKLEAEGSATEIHREKRI 460

[Close]

BLAST of CsaV3_7G000110.1 vs. NCBI nr
Match: TYJ99326.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.4 bits (568), Expect = 2.3e-54
Identity = 107/226 (47.35%), Postives = 144/226 (63.72%), Query Frame = 0


Query: 39  WWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNS 98
           WWL+A+YGP+KR+NR  FW ELE +KS C P W++GGDFN++RW+ ET+ KN A   M  
Sbjct: 31  WWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIRWKEETSTKNPASLSMKR 90

Query: 99  SILSFRDAISIIP-----QFQMPNTLGQT--SRLDRFLYTPNWESIFEPHFSRLLLRETS 158
                 +   I P     +F   N   Q   SRLDRFL++  WE+IF  H S++L R TS
Sbjct: 91  FNTFISNCNLIDPPLTNAKFTWSNLRAQATLSRLDRFLFSTQWENIFPGHTSKVLTRTTS 150

Query: 159 DHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWWTNTAQAGHPGYSFMRRLKQLS 218
           DHF I LES+S+ WGPSPFRFTN +LK+  +K+N E WW NT+Q G  GYSFM RLKQL+
Sbjct: 151 DHFPIVLESSSISWGPSPFRFTNAYLKDPDYKRNIEFWWGNTSQPGFAGYSFMHRLKQLA 210

Query: 219 QTIKSWSKSIKDSIVEERQALLKELEHIDNLKANNYHIYAHIQQNI 258
             IK+W +  K      ++A +KE++ I+ L+A       H ++ I
Sbjct: 211 MKIKAWGREKKGKDEASKKAWIKEIDLINKLEAEGTSTEIHREKRI 256

[Close]

BLAST of CsaV3_7G000110.1 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 3.4e-50
Identity = 106/234 (45.30%), Postives = 145/234 (61.97%), Query Frame = 0


Query: 19  VNGETTTTVNVCNID-TINSHWWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDF 78
           + G  + ++N+ + D   NS WWL+A+YGPS   NR  FW EL ++K+ C P WL+ GDF
Sbjct: 13  IEGNFSLSININSPDGPSNSAWWLSAIYGPSGGRNRKSFWAELLDLKNKCSPTWLLAGDF 72

Query: 79  NIVRWQSETTAKNIAVPCMNSSILSFRDAISIIP-----QFQMPNTLGQ--TSRLDRFLY 138
           N+VR+ SET+A+N +   M        D+  I P     +F   N       SR+DRFLY
Sbjct: 73  NVVRFPSETSAQNPSKHSMRCFNKFIADSNLIDPPLSNAKFTWSNLRVHPVLSRIDRFLY 132

Query: 139 TPNWESIFEPHFSRLLLRETSDHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWW 198
           T NWE++F  H+S+ L R TSDHF I LES+ + WGPSPF+  N  LKE  FK N  +WW
Sbjct: 133 TTNWENLFTAHYSKTLSRVTSDHFPIVLESSLISWGPSPFKLINVHLKEPWFKNNITNWW 192

Query: 199 TNTAQAGHPGYSFMRRLKQLSQTIKSWSKSIKDSIVEERQALLKELEHIDNLKA 245
            N  Q GHPG+SFMR+LKQLS  I++  +  K    E++ A +KE++ ID L+A
Sbjct: 193 KNLRQEGHPGFSFMRKLKQLSTIIRNEQRKNKCYSDEDKNAWIKEIDSIDRLEA 246

[Close]

BLAST of CsaV3_7G000110.1 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.1e-57
Identity = 109/214 (50.93%), Postives = 146/214 (68.22%), Query Frame = 0


Query: 39  WWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNS 98
           WWL+A+YGP+KR+NR  FW ELE +KS CLP W++GGDFN++RW+ ETT KN A+  M  
Sbjct: 31  WWLSAIYGPAKRKNRPLFWEELEHLKSICLPTWILGGDFNVIRWKEETTTKNPALLSMR- 90

Query: 99  SILSFRDAISII------PQFQMPNTLGQT--SRLDRFLYTPNWESIFEPHFSRLLLRET 158
              SF    ++I       ++   N   Q   SRLDRFL+T  WE+IF  H S++L R T
Sbjct: 91  RFNSFISNCNLIDPPLSNAKYTWSNLRAQATLSRLDRFLFTSQWENIFPGHTSKVLTRTT 150

Query: 159 SDHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWWTNTAQAGHPGYSFMRRLKQL 218
           SDHF I LES+++ WGPSPFRFTN +LK+  +K+N E WW NT+Q G+ GYSFMRRLKQL
Sbjct: 151 SDHFPIVLESSTISWGPSPFRFTNAYLKDPDYKKNIEFWWGNTSQPGYAGYSFMRRLKQL 210

Query: 219 SQTIKSWSKSIKDSIVEERQALLKELEHIDNLKA 245
           +  IK+W +  K      ++A +KE++ ID L+A
Sbjct: 211 ALIIKTWGRDKKGKNEASKKACIKEIDQIDKLEA 243

[Close]

BLAST of CsaV3_7G000110.1 vs. ExPASy TrEMBL
Match: A0A5D3E0F6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001830 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 5.0e-55
Identity = 107/226 (47.35%), Postives = 146/226 (64.60%), Query Frame = 0


Query: 39  WWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNS 98
           WWL+A+YGP+KR+NR  FW ELE +KS C P W++GGDFN++RW+ ET+ KN A   M  
Sbjct: 235 WWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIRWKEETSTKNPASLSMKR 294

Query: 99  SILSFRDAISIIP-----QFQMPNTLGQT--SRLDRFLYTPNWESIFEPHFSRLLLRETS 158
                 +   I P     +F   N   Q   SRLDRFL++ +WE+IF  H S++L R TS
Sbjct: 295 FNTFISNCNLIDPPLTNAKFTWSNLRAQATLSRLDRFLFSTHWENIFPGHTSKVLTRTTS 354

Query: 159 DHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWWTNTAQAGHPGYSFMRRLKQLS 218
           DHF I LES+++ WGPSPFRFTN +LK+  +K+N E WW NT+Q G+ GYSFM RLKQL+
Sbjct: 355 DHFPIVLESSTISWGPSPFRFTNAYLKDPDYKKNIEFWWGNTSQPGYAGYSFMHRLKQLA 414

Query: 219 QTIKSWSKSIKDSIVEERQALLKELEHIDNLKANNYHIYAHIQQNI 258
             IK+W +  K      ++A +KE++ ID L+A       H ++ I
Sbjct: 415 LKIKAWGREKKGKNEASKKAWIKEIDLIDKLEAEGSATEIHREKRI 460

[Close]

BLAST of CsaV3_7G000110.1 vs. ExPASy TrEMBL
Match: A0A5D3BJP3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005410 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 107/226 (47.35%), Postives = 144/226 (63.72%), Query Frame = 0


Query: 39  WWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDFNIVRWQSETTAKNIAVPCMNS 98
           WWL+A+YGP+KR+NR  FW ELE +KS C P W++GGDFN++RW+ ET+ KN A   M  
Sbjct: 31  WWLSAIYGPAKRKNRPLFWEELENLKSICFPTWILGGDFNVIRWKEETSTKNPASLSMKR 90

Query: 99  SILSFRDAISIIP-----QFQMPNTLGQT--SRLDRFLYTPNWESIFEPHFSRLLLRETS 158
                 +   I P     +F   N   Q   SRLDRFL++  WE+IF  H S++L R TS
Sbjct: 91  FNTFISNCNLIDPPLTNAKFTWSNLRAQATLSRLDRFLFSTQWENIFPGHTSKVLTRTTS 150

Query: 159 DHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWWTNTAQAGHPGYSFMRRLKQLS 218
           DHF I LES+S+ WGPSPFRFTN +LK+  +K+N E WW NT+Q G  GYSFM RLKQL+
Sbjct: 151 DHFPIVLESSSISWGPSPFRFTNAYLKDPDYKRNIEFWWGNTSQPGFAGYSFMHRLKQLA 210

Query: 219 QTIKSWSKSIKDSIVEERQALLKELEHIDNLKANNYHIYAHIQQNI 258
             IK+W +  K      ++A +KE++ I+ L+A       H ++ I
Sbjct: 211 MKIKAWGREKKGKDEASKKAWIKEIDLINKLEAEGTSTEIHREKRI 256

[Close]

BLAST of CsaV3_7G000110.1 vs. ExPASy TrEMBL
Match: A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.6e-50
Identity = 106/234 (45.30%), Postives = 145/234 (61.97%), Query Frame = 0


Query: 19  VNGETTTTVNVCNID-TINSHWWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDF 78
           + G  + ++N+ + D   NS WWL+A+YGPS   NR  FW EL ++K+ C P WL+ GDF
Sbjct: 13  IEGNFSLSININSPDGPSNSAWWLSAIYGPSGGRNRKSFWAELLDLKNKCSPTWLLAGDF 72

Query: 79  NIVRWQSETTAKNIAVPCMNSSILSFRDAISIIP-----QFQMPNTLGQ--TSRLDRFLY 138
           N+VR+ SET+A+N +   M        D+  I P     +F   N       SR+DRFLY
Sbjct: 73  NVVRFPSETSAQNPSKHSMRCFNKFIADSNLIDPPLSNAKFTWSNLRVHPVLSRIDRFLY 132

Query: 139 TPNWESIFEPHFSRLLLRETSDHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWW 198
           T NWE++F  H+S+ L R TSDHF I LES+ + WGPSPF+  N  LKE  FK N  +WW
Sbjct: 133 TTNWENLFTAHYSKTLSRVTSDHFPIVLESSLISWGPSPFKLINVHLKEPWFKNNITNWW 192

Query: 199 TNTAQAGHPGYSFMRRLKQLSQTIKSWSKSIKDSIVEERQALLKELEHIDNLKA 245
            N  Q GHPG+SFMR+LKQLS  I++  +  K    E++ A +KE++ ID L+A
Sbjct: 193 KNLRQEGHPGFSFMRKLKQLSTIIRNEQRKNKCYSDEDKNAWIKEIDSIDRLEA 246

[Close]

BLAST of CsaV3_7G000110.1 vs. ExPASy TrEMBL
Match: A0A5D3DLM2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00780 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 4.8e-50
Identity = 107/234 (45.73%), Postives = 145/234 (61.97%), Query Frame = 0


Query: 19  VNGETTTTVNVCNID-TINSHWWLTAVYGPSKRENRGDFWMELEEIKSTCLPRWLMGGDF 78
           + G  + ++N+   D   +S WWL+A+YGPS   NR  FW EL ++K+ C P WL+ GDF
Sbjct: 13  IEGTFSLSININFPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKNKCSPTWLLAGDF 72

Query: 79  NIVRWQSETTAKNIAVPCMNSSILSFRDAISIIP-----QFQMPNTLGQ--TSRLDRFLY 138
           N VR+ SET+ +N +   M        D+  I P     +F   N   Q   SR+DRFLY
Sbjct: 73  NAVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRVQPVLSRIDRFLY 132

Query: 139 TPNWESIFEPHFSRLLLRETSDHFSITLESNSLKWGPSPFRFTNTFLKEVSFKQNFEHWW 198
           T NWE++F  H+S+ L R TSDHF I LES+ + WGPSPF+F N  LKE  FK+N   WW
Sbjct: 133 TANWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKFINVHLKEPWFKKNVTIWW 192

Query: 199 TNTAQAGHPGYSFMRRLKQLSQTIKSWSKSIKDSIVEERQALLKELEHIDNLKA 245
            N  Q GHPG+SFM++LKQLS  I+   K  K    EE++A +KE+++ID L+A
Sbjct: 193 KNLRQGGHPGFSFMKKLKQLSAIIRDEQKKNKCYNDEEKKAWIKEIDNIDRLEA 246

The following BLAST results are available for this feature:

BLAST of CsaV3_7G000110.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645642.1	3.8e-150	100.00	hypothetical protein Csa_020231 [Cucumis sativus]	[more]
KAA0039950.1	8.4e-57	50.93	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
TYK29577.1	1.0e-54	47.35	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYJ99326.1	2.3e-54	47.35	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK06777.1	3.4e-50	45.30	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_7G000110.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G000110.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9I7	4.1e-57	50.93	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3E0F6	5.0e-55	47.35	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BJP3	1.1e-54	47.35	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C4J1	1.6e-50	45.30	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DLM2	4.8e-50	45.73	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of CsaV3_7G000110.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 13..159 e-value: 1.8E-10 score: 42.9
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 36..159
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 37..253
None	No IPR available	PANTHER	PTHR33710:SF28	SUBFAMILY NOT NAMED	coord: 37..253

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G000110	CsaV3_7G000110	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G000110.1.exon2	CsaV3_7G000110.1.exon2	exon
CsaV3_7G000110.1.exon1	CsaV3_7G000110.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G000110.1.cds2	CsaV3_7G000110.1.cds2	CDS
CsaV3_7G000110.1.cds1	CsaV3_7G000110.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G000110.1	CsaV3_7G000110.1-protein	polypeptide