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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTTGTTGTTGCATTTCTATCGTTTATTGGAGATGTTGTGATCATCACTGATTCCTTGTTACTCCGTGATGTGTTATTCGTCTCACAGTTCTCCTTTATTTAACCTTGTCTCTGTGTGTTGTTTACTTCAACATGGTGATATTTTTGTTGATTTTTTCTACTAATCAGTGCATCATACAGGATATTTCCCAATTGAAGACACGATTGGCAAGGCTAATTGATTCCAAATTCGTACCCGTTGCAGCTGCTTGTTCTATTTCTGCATGCTGGTGTTTGGCATCAACCAAGCGTTTAGGCCACTGTTAG mRNA sequence ATGGTTGTTGTTGCATTTCTATCGTTTATTGGAGATGTTGTGATCATCACTGATTCCTTGTTACTCCGTGATGATATTTCCCAATTGAAGACACGATTGGCAAGGCTAATTGATTCCAAATTCGTACCCGTTGCAGCTGCTTGTTCTATTTCTGCATGCTGGTGTTTGGCATCAACCAAGCGTTTAGGCCACTGTTAG Coding sequence (CDS) ATGGTTGTTGTTGCATTTCTATCGTTTATTGGAGATGTTGTGATCATCACTGATTCCTTGTTACTCCGTGATGATATTTCCCAATTGAAGACACGATTGGCAAGGCTAATTGATTCCAAATTCGTACCCGTTGCAGCTGCTTGTTCTATTTCTGCATGCTGGTGTTTGGCATCAACCAAGCGTTTAGGCCACTGTTAG Protein sequence MVVVAFLSFIGDVVIITDSLLLRDDISQLKTRLARLIDSKFVPVAAACSISACWCLASTKRLGHC*
Homology
BLAST of CsaV3_6G036980.1 vs. NCBI nr
Match: KGN47882.1 (hypothetical protein Csa_004434 [Cucumis sativus]) HSP 1 Score: 124.8 bits (312), Expect = 2.8e-25 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 Query: 1 MVVVAFLSFIGDVVIITDSLLLRDDISQLKTRLARLIDSKFVPVAAACSISACWCLASTK 60 MVVVAFLSFIGDVVIITDSLLLRDDISQLKTRLARLIDSKFVPVAAACSISACWCLASTK Sbjct: 1 MVVVAFLSFIGDVVIITDSLLLRDDISQLKTRLARLIDSKFVPVAAACSISACWCLASTK 60
Query: 61 RLGHC 66 RLGHC Sbjct: 61 RLGHC 65
BLAST of CsaV3_6G036980.1 vs. ExPASy TrEMBL
Match: A0A0A0KHL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409390 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 Query: 1 MVVVAFLSFIGDVVIITDSLLLRDDISQLKTRLARLIDSKFVPVAAACSISACWCLASTK 60 MVVVAFLSFIGDVVIITDSLLLRDDISQLKTRLARLIDSKFVPVAAACSISACWCLASTK Sbjct: 1 MVVVAFLSFIGDVVIITDSLLLRDDISQLKTRLARLIDSKFVPVAAACSISACWCLASTK 60
Query: 61 RLGHC 66 RLGHC Sbjct: 61 RLGHC 65
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN47882.1 | 2.8e-25 | 100.00 | hypothetical protein Csa_004434 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KHL7 | 1.4e-25 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409390 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CsaV3_6G036980.1.exon2 | CsaV3_6G036980.1.exon2 | exon |
CsaV3_6G036980.1.exon1 | CsaV3_6G036980.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CsaV3_6G036980.1.cds2 | CsaV3_6G036980.1.cds2 | CDS |
CsaV3_6G036980.1.cds1 | CsaV3_6G036980.1.cds1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
CsaV3_6G036980.1 | CsaV3_6G036980.1-protein | polypeptide |
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