CsaV3_6G036980 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G036980
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 20776415 .. 20776722 (-)
RNA-Seq ExpressionCsaV3_6G036980
SyntenyCsaV3_6G036980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTTGTTGCATTTCTATCGTTTATTGGAGATGTTGTGATCATCACTGATTCCTTGTTACTCCGTGATGTGTTATTCGTCTCACAGTTCTCCTTTATTTAACCTTGTCTCTGTGTGTTGTTTACTTCAACATGGTGATATTTTTGTTGATTTTTTCTACTAATCAGTGCATCATACAGGATATTTCCCAATTGAAGACACGATTGGCAAGGCTAATTGATTCCAAATTCGTACCCGTTGCAGCTGCTTGTTCTATTTCTGCATGCTGGTGTTTGGCATCAACCAAGCGTTTAGGCCACTGTTAG

mRNA sequence

ATGGTTGTTGTTGCATTTCTATCGTTTATTGGAGATGTTGTGATCATCACTGATTCCTTGTTACTCCGTGATGATATTTCCCAATTGAAGACACGATTGGCAAGGCTAATTGATTCCAAATTCGTACCCGTTGCAGCTGCTTGTTCTATTTCTGCATGCTGGTGTTTGGCATCAACCAAGCGTTTAGGCCACTGTTAG

Coding sequence (CDS)

ATGGTTGTTGTTGCATTTCTATCGTTTATTGGAGATGTTGTGATCATCACTGATTCCTTGTTACTCCGTGATGATATTTCCCAATTGAAGACACGATTGGCAAGGCTAATTGATTCCAAATTCGTACCCGTTGCAGCTGCTTGTTCTATTTCTGCATGCTGGTGTTTGGCATCAACCAAGCGTTTAGGCCACTGTTAG

Protein sequence

MVVVAFLSFIGDVVIITDSLLLRDDISQLKTRLARLIDSKFVPVAAACSISACWCLASTKRLGHC*
Homology
[Close]
BLAST of CsaV3_6G036980 vs. NCBI nr
Match: KGN47882.1 (hypothetical protein Csa_004434 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 2.8e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MVVVAFLSFIGDVVIITDSLLLRDDISQLKTRLARLIDSKFVPVAAACSISACWCLASTK 60
          MVVVAFLSFIGDVVIITDSLLLRDDISQLKTRLARLIDSKFVPVAAACSISACWCLASTK
Sbjct: 1  MVVVAFLSFIGDVVIITDSLLLRDDISQLKTRLARLIDSKFVPVAAACSISACWCLASTK 60

Query: 61 RLGHC 66
          RLGHC
Sbjct: 61 RLGHC 65

[Close]
BLAST of CsaV3_6G036980 vs. ExPASy TrEMBL
Match: A0A0A0KHL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409390 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MVVVAFLSFIGDVVIITDSLLLRDDISQLKTRLARLIDSKFVPVAAACSISACWCLASTK 60
          MVVVAFLSFIGDVVIITDSLLLRDDISQLKTRLARLIDSKFVPVAAACSISACWCLASTK
Sbjct: 1  MVVVAFLSFIGDVVIITDSLLLRDDISQLKTRLARLIDSKFVPVAAACSISACWCLASTK 60

Query: 61 RLGHC 66
          RLGHC
Sbjct: 61 RLGHC 65

The following BLAST results are available for this feature:
BLAST of CsaV3_6G036980 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47882.12.8e-25100.00hypothetical protein Csa_004434 [Cucumis sativus][more]
BLAST of CsaV3_6G036980 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G036980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHL71.4e-25100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G409390 PE=4 SV=1[more]
BLAST of CsaV3_6G036980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G036980.1CsaV3_6G036980.1mRNA