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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAATTAAAAATTCCTTTGATCGGTAAATTGGCAAATCTGATCGGTAAATTGGCAAATCTGAACATGAACAGAGGAGGTTCAGTTTGCCAATACCATCATCGAACGCCTTGTCTTTTCAATTTACTTACAAATTCGTACACTCAAAAAAGGCAATTCGATTCTCCATTTCAAAGCCCGAAGAAGATACGGATCATCATCAATCAAAAACACAATGTTCATCAATAAAATGAAGACCCAAAACCAGCAAATTCTGCCCATTCTGAAGTGCAGCATATCAGTTTTTAATGATCTTTCTTACTGTATGTAAAGTTTACCACATACTTATATGTACAAGCATCTCTGGTTAGTCCACTCGGCTACGCCACTAATAGCCCTGAAATTGAACTGCTAGCTGCAGCTATACGTATGCAGAAGGACAGAGACAGAGACAGAGAGAGAGACCTTGTGTGCCCTGAATCGCACAAACAGGCATTGTAG mRNA sequence ATGAAATTAAAAATTCCTTTGATCGGTAAATTGGCAAATCTGATCGGTAAATTGGCAAATCTGAACATGAACAGAGGAGGTTCAGTTTGCCAATACCATCATCGAACGCCTTGTCTTTTCAATTTACTTACAAATTCGTACACTCAAAAAAGGCAATTCGATTCTCCATTTCAAAGCCCGAAGAAGATACGGATCATCATCAATCAAAAACACAATTTTACCACATACTTATATGTACAAGCATCTCTGGTTAGTCCACTCGGCTACGCCACTAATAGCCCTGAAATTGAACTGCTAGCTGCAGCTATACGTATGCAGAAGGACAGAGACAGAGACAGAGAGAGAGACCTTGTGTGCCCTGAATCGCACAAACAGGCATTGTAG Coding sequence (CDS) ATGAAATTAAAAATTCCTTTGATCGGTAAATTGGCAAATCTGATCGGTAAATTGGCAAATCTGAACATGAACAGAGGAGGTTCAGTTTGCCAATACCATCATCGAACGCCTTGTCTTTTCAATTTACTTACAAATTCGTACACTCAAAAAAGGCAATTCGATTCTCCATTTCAAAGCCCGAAGAAGATACGGATCATCATCAATCAAAAACACAATTTTACCACATACTTATATGTACAAGCATCTCTGGTTAGTCCACTCGGCTACGCCACTAATAGCCCTGAAATTGAACTGCTAGCTGCAGCTATACGTATGCAGAAGGACAGAGACAGAGACAGAGAGAGAGACCTTGTGTGCCCTGAATCGCACAAACAGGCATTGTAG Protein sequence MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSPKKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCPESHKQAL*
Homology
BLAST of CsaV3_6G033880.1 vs. NCBI nr
Match: KGN47670.1 (hypothetical protein Csa_018248 [Cucumis sativus]) HSP 1 Score: 257.7 bits (657), Expect = 5.3e-65 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
Query: 1 MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP 60
MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP
Sbjct: 1 MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP 60
Query: 61 KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCP 120
KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCP
Sbjct: 61 KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCP 120
Query: 121 ESHKQAL 128
ESHKQAL
Sbjct: 121 ESHKQAL 127
BLAST of CsaV3_6G033880.1 vs. ExPASy TrEMBL
Match: A0A0A0KD93 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367160 PE=4 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 2.6e-65 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
Query: 1 MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP 60
MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP
Sbjct: 1 MKLKIPLIGKLANLIGKLANLNMNRGGSVCQYHHRTPCLFNLLTNSYTQKRQFDSPFQSP 60
Query: 61 KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCP 120
KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCP
Sbjct: 61 KKIRIIINQKHNFTTYLYVQASLVSPLGYATNSPEIELLAAAIRMQKDRDRDRERDLVCP 120
Query: 121 ESHKQAL 128
ESHKQAL
Sbjct: 121 ESHKQAL 127
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN47670.1 | 5.3e-65 | 100.00 | hypothetical protein Csa_018248 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KD93 | 2.6e-65 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367160 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_6G033880.1.exon2 | CsaV3_6G033880.1.exon2 | exon |
| CsaV3_6G033880.1.exon1 | CsaV3_6G033880.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_6G033880.1.cds2 | CsaV3_6G033880.1.cds2 | CDS |
| CsaV3_6G033880.1.cds1 | CsaV3_6G033880.1.cds1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_6G033880.1 | CsaV3_6G033880.1-protein | polypeptide |
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