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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. GCTCTATGCAAGCATCTTGGCTTCATGGGTTTGTACATGATAGATGATGCAACTCTATCATGGCGTCCATTGTTTCTTCGGCTTCTACTTCTTGGGTTTGTACATGATAGACGATGCAACTCTATCATGGCGCCCACTGCTGCTGCGACTTATTGG mRNA sequence GCTCTATGCAAGCATCTTGGCTTCATGGGTTTGTACATGATAGATGATGCAACTCTATCATGGCGTCCATTGTTTCTTCGGCTTCTACTTCTTGGGTTTGTACATGATAGACGATGCAACTCTATCATGGCGCCCACTGCTGCTGCGACTTATTGG Coding sequence (CDS) GCTCTATGCAAGCATCTTGGCTTCATGGGTTTGTACATGATAGATGATGCAACTCTATCATGGCGTCCATTGTTTCTTCGGCTTCTACTTCTTGGGTTTGTACATGATAGACGATGCAACTCTATCATGGCGCCCACTGCTGCTGCGACTTATTGG Protein sequence ALCKHLGFMGLYMIDDATLSWRPLFLRLLLLGFVHDRRCNSIMAPTAAATYW
Homology
BLAST of CsaV3_6G031290.1 vs. NCBI nr
Match: KAE8647201.1 (hypothetical protein Csa_018949, partial [Cucumis sativus]) HSP 1 Score: 114.4 bits (285), Expect = 3.0e-22 Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0
Query: 1 ALCKHLGFMGLYMIDDATLSWRPLFLRLLLLGFVHDRRCNSIMAPTAAATYW 53
ALCKHLGFMGLYMIDDATLSWRPLFLRLLLLGFVHDRRCNSIMAPTAAATYW
Sbjct: 1 ALCKHLGFMGLYMIDDATLSWRPLFLRLLLLGFVHDRRCNSIMAPTAAATYW 52
BLAST of CsaV3_6G031290.1 vs. NCBI nr
Match: KAE8647061.1 (hypothetical protein Csa_023034 [Cucumis sativus]) HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09 Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = 0
Query: 8 FMGLYMIDDATLSWRPLFLRLLLLGFVHDRRCNSIMAPTAAATYW 53
F+GLYMIDDAT SWR L LR LLGFVHDR+CNSIMAP AA T W
Sbjct: 44 FLGLYMIDDATPSWRLLLLR--LLGFVHDRQCNSIMAPIAAVTSW 86
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8647201.1 | 3.0e-22 | 100.00 | hypothetical protein Csa_018949, partial [Cucumis sativus] | [more] |
| KAE8647061.1 | 1.7e-09 | 77.78 | hypothetical protein Csa_023034 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_6G031290.1.exon1 | CsaV3_6G031290.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_6G031290.1.cds1 | CsaV3_6G031290.1.cds1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_6G031290.1 | CsaV3_6G031290.1-protein | polypeptide |
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