CsaV3_6G022440.1 (mRNA) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGAAGATTAAAACAGCTTACTTCATCCATCAAACATTGGAGCAATCTCAGAAAAGGGAAAGTTGAGGAGAACAAACAAATATGGATAAAAGAGATTGAAGCTATCAATTTATTAGAAGCTGGAGGGAACATCTCTAAAATTCAGTGTAATCGTAGAATTGCTCTCAAAGCAGAACTTTCCCAAGCTACACACGTTGAATCACAAATTTGGGCACAAAAGTGTAAAAGATTATGGAATTTGGAGGGGATGAGAACTCTTATTTTCACACAATCTGTTCAGCGAGACAAAGAAGAAGCTTCATTTCTAATATCGTTAGCGAATCGGGGCTTATCTGTACAAAAGACGAAGACATTGAGAAAACCTTCATTGAACACTTCAACAATATTTATTCTGCCACCGAAAAAGAACAGTATTTTGTGAAAAATATTCATTGGGCTCCAATTCTGACTTCAACAAAAAATTTGATTGATTTTCCTTTTGATGAAATTGTGATCTTGAATTCTCTTAAATCCTTCGACAACAACAAAGTCCTGAGTCCAAATGGTTATACTATGGAATTCATGAAGAAAAATTGGAAAATCATGAAAAATGAGATACTTAATATTTTTAAAAGAAAGGGCTAACAAAGTTCAAAGCCATCCTTTTTGTAGTTTAGCCTCACTGCTATACTCTACTACTACGAAAACAAGTTTACATGATTTTGAAAAATTATTATTAATACTGTTCGTGACGCTTTTTTAATCGTATAATTCACCATCAACATAAGTATACACATGACGTGCGAAGAAAATTTCGTATATATTGTTCCATGGTACTTCATTTCAATCAGCAATAAATATTTTTATTGACACATAATATCTATCGTGTTAGATTTGTTACCGTGCATTTACCCTATATAGACAAAGAGATATTGAATTTCTGAATTTAAAACATTAGTGTGGATCTGGCATTTGGACTAAATTAATAAAGTCTATCTTTCGTCATTCTTATATAGTGATATTCTTGATTCGAGAATTAGATTATATTACGGGCAACTTGGGCAGTTAGAATTTAATTGAATAAAGTATTTGTTCTTTAATTATATGTATTTGAAGGAATTAGAGAGAGTATTAATTTAAGTTAAAATATGCAAAATCCAAAGCATTTATTTTTGTGGAGCAAATTGACAACTGTGTGTGTGTATACGAGTCGGTATTTGAAAGAAACATATATTAGCAGGAATAAAAAAATTAGTTTAGAGCCAATTGATGAACAAAATTGTAATAATGACCTTTCAAATCTGTAAACACTATTGAGCTCTCTAACCCTTTAAGTTGTAAGGTTTTCCTCTAGCGTTGTTCTGTTTTTGTCTTTGATAGCTAGAGCTTCTCTCTCCAATTCACATGCACATATGTAACATAATTATGGTTTCACCCGTATACAATAAAGATATTAAGAATGTGTAAACTTAGTTAAGATGTCTAGTGCACCAGTTGATTATTTTCTTTTAATATATATTGCTCGAAGAAATATATATATACAACACCATCTAAACTCTAAGTTCAAAATCTTAAAGGAAAATTGCACGATGATAAAAAAAAAGTTAGAAAAAAACAGTTCATAACATTTTTTTTTTTTTTTGCATATTGCAAATTTGACAAATATAATGGTAATCAGATGGTAATTTACTTTTAAATTTGCTATTTTTGCAATTTTCAAAATACAAGTGACATGAACTATTATCATAAATATTTTTTTGCTATTTTTCAAACTTTCTAATCTTAAATTACATAAAATATGTATATATACAATTTAGGTTTTAAAAATTTAATTTGTATATAAGAATTCGAAACATTCCAAACACTAACTCAACCTTATCATTGATGTTTAATTCTTCATTCTAAATAAGTGTTGCAAAGCAACTTTGATCCAAGTGTTTAGGTGGGAAACAAAGTGAGTTTGATTTGGTATATGGTCAAGACACGTTAATCTCCCTACCATATCATATGGTATTATTATTTCTTTCTTATTATTTTTTCTATTATTGATCATACTAATGAAAATAGTAAGGTTGGAATATTTCAACTAGTTTCTTCCTCCCACGTTCTTGAAATTAAGTTGTATAAATACATTGTCCACCTATGTGTATTGATCATGCTGTGAAATGATTAAAACTAAAACCACCATATAAAGGAGAAACACAAAGGTTACATTCTTGTATTAAATTTACCATTCTTGTATTAAAACCACCATACAAAGGTTACACAAAGGTTACACAAAGGTTGGAATATTTTTTTGTTTGCCATTCTTGTATTAAATTAATTTACTTCTAAAATATGTTAGGGTAATGTAACCAATGGATTGGACTAAGGGACTAAAATAAACTCTTTTCTAAACCTAAAATGTACGATTTGAAATGATCTGTTGTGCAAAACTTAAAGAACTAAAATTGTAATTTGTCAAAAAACATATATTAATAATTTATACCAATTGTATTGAACAACATCGTTGAATTTGATAAAGAAAGAGGAAGTACAAAGCATTATAGGTCCTACAAGTTCGATGCAAGCGAGTTTCCTGATCGATGTTGGAGACAAAGCACAAGTTTCCATAATCTCATTTTCCGCCACACGACCTTCCCTCACATCCCATCGCGGCTCTTACTTCTTCCGAATCACCCAAGCTGATTCCTTTCAAGTGAAAGCCATTGCAGCCATTGTCAAGGCTTTCAAATGGAGAAAAATTGTCTCAATCTACGTCGACAACGAGTTCGGCGACGGTATCATACCTTTCCTTGTCGATGCTTTACAAGAGGTAGATGCAAATGTGTCATACCAAAGCGTCATCTCTCTTACCGCCACCAACGACGAGATTGAACTCAAACTTTCAAATTTAATGAATATGCAAACTCGAGTGTTTGTGGTGCACATGTTACCTCCCCTTGCTTCAAGACTCTTCATTGTGGCAAAAAAGAAGGGAATGATGGGTCGTGGCTACACTTGGATAGTAATAGATGCTATCACAAACGAATTTAATTCGAAACCCTTAATTTTTTATCAATCAATGCAAGGAGTTTTGGGAATAAGAAATTATGTCCCAGGAATCAAACGCCTTGAATCCTTTAAACGTGATTGGCAAAAGAGATTTCTAAGGTACTATCCAACCATAGAAGAAATTCCTGAGCTCAACGTGTTTGGTTTATGGGCTTATGACGCTGCTTGGCGCTAG ATGAGAAGATTAAAACAGCTTACTTCATCCATCAAACATTGGAGCAATCTCAGAAAAGGGAAAGTTGAGGAGAACAAACAAATATGGATAAAAGAGATTGAAGCTATCAATTTATTAGAAGCTGGAGGGAACATCTCTAAAATTCAGTGTAATCGTAGAATTGCTCTCAAAGCAGAACTTTCCCAAGCTACACACGTTGAATCACAAATTTGGGCACAAAAGTGTAAAAGATTATGGAATTTGGAGGGGATGAGAACTCTTATTTTCACACAATCTGTTCAGCGAGACAAAGAAGAAGCTTCATTTCTAATATCGTTAGCGAATCGGGGCTTATCTGTACAAAAGACGAAGACATTGAGAAAACCTTCATTGAACACTTCAACAATATTTATTCTGCCACCGAAAAAGAACAGTCCTACAAGTTCGATGCAAGCGAGTTTCCTGATCGATGTTGGAGACAAAGCACAAGTTTCCATAATCTCATTTTCCGCCACACGACCTTCCCTCACATCCCATCGCGGCTCTTACTTCTTCCGAATCACCCAAGCTGATTCCTTTCAAGTGAAAGCCATTGCAGCCATTGTCAAGGCTTTCAAATGGAGAAAAATTGTCTCAATCTACGTCGACAACGAGTTCGGCGACGGTATCATACCTTTCCTTGTCGATGCTTTACAAGAGGTAGATGCAAATGTGTCATACCAAAGCGTCATCTCTCTTACCGCCACCAACGACGAGATTGAACTCAAACTTTCAAATTTAATGAATATGCAAACTCGAGTGTTTGTGGTGCACATGTTACCTCCCCTTGCTTCAAGACTCTTCATTGTGGCAAAAAAGAAGGGAATGATGGGTCGTGGCTACACTTGGATAGTAATAGATGCTATCACAAACGAATTTAATTCGAAACCCTTAATTTTTTATCAATCAATGCAAGGAGTTTTGGGAATAAGAAATTATGTCCCAGGAATCAAACGCCTTGAATCCTTTAAACGTGATTGGCAAAAGAGATTTCTAAGGTACTATCCAACCATAGAAGAAATTCCTGAGCTCAACGTGTTTGGTTTATGGGCTTATGACGCTGCTTGGCGCTAG ATGAGAAGATTAAAACAGCTTACTTCATCCATCAAACATTGGAGCAATCTCAGAAAAGGGAAAGTTGAGGAGAACAAACAAATATGGATAAAAGAGATTGAAGCTATCAATTTATTAGAAGCTGGAGGGAACATCTCTAAAATTCAGTGTAATCGTAGAATTGCTCTCAAAGCAGAACTTTCCCAAGCTACACACGTTGAATCACAAATTTGGGCACAAAAGTGTAAAAGATTATGGAATTTGGAGGGGATGAGAACTCTTATTTTCACACAATCTGTTCAGCGAGACAAAGAAGAAGCTTCATTTCTAATATCGTTAGCGAATCGGGGCTTATCTGTACAAAAGACGAAGACATTGAGAAAACCTTCATTGAACACTTCAACAATATTTATTCTGCCACCGAAAAAGAACAGTCCTACAAGTTCGATGCAAGCGAGTTTCCTGATCGATGTTGGAGACAAAGCACAAGTTTCCATAATCTCATTTTCCGCCACACGACCTTCCCTCACATCCCATCGCGGCTCTTACTTCTTCCGAATCACCCAAGCTGATTCCTTTCAAGTGAAAGCCATTGCAGCCATTGTCAAGGCTTTCAAATGGAGAAAAATTGTCTCAATCTACGTCGACAACGAGTTCGGCGACGGTATCATACCTTTCCTTGTCGATGCTTTACAAGAGGTAGATGCAAATGTGTCATACCAAAGCGTCATCTCTCTTACCGCCACCAACGACGAGATTGAACTCAAACTTTCAAATTTAATGAATATGCAAACTCGAGTGTTTGTGGTGCACATGTTACCTCCCCTTGCTTCAAGACTCTTCATTGTGGCAAAAAAGAAGGGAATGATGGGTCGTGGCTACACTTGGATAGTAATAGATGCTATCACAAACGAATTTAATTCGAAACCCTTAATTTTTTATCAATCAATGCAAGGAGTTTTGGGAATAAGAAATTATGTCCCAGGAATCAAACGCCTTGAATCCTTTAAACGTGATTGGCAAAAGAGATTTCTAAGGTACTATCCAACCATAGAAGAAATTCCTGAGCTCAACGTGTTTGGTTTATGGGCTTATGACGCTGCTTGGCGCTAG MRRLKQLTSSIKHWSNLRKGKVEENKQIWIKEIEAINLLEAGGNISKIQCNRRIALKAELSQATHVESQIWAQKCKRLWNLEGMRTLIFTQSVQRDKEEASFLISLANRGLSVQKTKTLRKPSLNTSTIFILPPKKNSPTSSMQASFLIDVGDKAQVSIISFSATRPSLTSHRGSYFFRITQADSFQVKAIAAIVKAFKWRKIVSIYVDNEFGDGIIPFLVDALQEVDANVSYQSVISLTATNDEIELKLSNLMNMQTRVFVVHMLPPLASRLFIVAKKKGMMGRGYTWIVIDAITNEFNSKPLIFYQSMQGVLGIRNYVPGIKRLESFKRDWQKRFLRYYPTIEEIPELNVFGLWAYDAAWR* Homology
BLAST of CsaV3_6G022440.1 vs. NCBI nr
Match: KAE8647082.1 (hypothetical protein Csa_022943 [Cucumis sativus]) HSP 1 Score: 714.9 bits (1844), Expect = 3.5e-202 Identity = 363/363 (100.00%), Postives = 363/363 (100.00%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. NCBI nr
Match: KAE8652218.1 (hypothetical protein Csa_022484 [Cucumis sativus]) HSP 1 Score: 416.8 bits (1070), Expect = 2.0e-112 Identity = 210/225 (93.33%), Postives = 214/225 (95.11%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. NCBI nr
Match: XP_031737065.1 (glutamate receptor 2.5 [Cucumis sativus]) HSP 1 Score: 416.8 bits (1070), Expect = 2.0e-112 Identity = 210/225 (93.33%), Postives = 214/225 (95.11%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. NCBI nr
Match: KAA0064864.1 (glutamate receptor 2.5-like [Cucumis melo var. makuwa]) HSP 1 Score: 392.5 bits (1007), Expect = 4.0e-105 Identity = 197/225 (87.56%), Postives = 207/225 (92.00%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. NCBI nr
Match: XP_016899964.1 (PREDICTED: glutamate receptor 2.5-like [Cucumis melo]) HSP 1 Score: 386.0 bits (990), Expect = 3.7e-103 Identity = 193/225 (85.78%), Postives = 205/225 (91.11%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. ExPASy Swiss-Prot
Match: Q9SHV1 (Glutamate receptor 2.2 OS=Arabidopsis thaliana OX=3702 GN=GLR2.2 PE=2 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 4.2e-57 Identity = 110/222 (49.55%), Postives = 155/222 (69.82%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. ExPASy Swiss-Prot
Match: O04660 (Glutamate receptor 2.1 OS=Arabidopsis thaliana OX=3702 GN=GLR2.1 PE=2 SV=2) HSP 1 Score: 218.4 bits (555), Expect = 1.3e-55 Identity = 109/222 (49.10%), Postives = 151/222 (68.02%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. ExPASy Swiss-Prot
Match: Q9SHV2 (Glutamate receptor 2.3 OS=Arabidopsis thaliana OX=3702 GN=GLR2.3 PE=2 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 3.0e-55 Identity = 108/222 (48.65%), Postives = 152/222 (68.47%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. ExPASy Swiss-Prot
Match: Q9LFN8 (Glutamate receptor 2.6 OS=Arabidopsis thaliana OX=3702 GN=GLR2.6 PE=2 SV=2) HSP 1 Score: 211.5 bits (537), Expect = 1.6e-53 Identity = 108/223 (48.43%), Postives = 149/223 (66.82%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. ExPASy Swiss-Prot
Match: Q9LFN5 (Glutamate receptor 2.5 OS=Arabidopsis thaliana OX=3702 GN=GLR2.5 PE=2 SV=2) HSP 1 Score: 211.1 bits (536), Expect = 2.1e-53 Identity = 111/223 (49.78%), Postives = 149/223 (66.82%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. ExPASy TrEMBL
Match: A0A5A7VC72 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001770 PE=3 SV=1) HSP 1 Score: 392.5 bits (1007), Expect = 1.9e-105 Identity = 197/225 (87.56%), Postives = 207/225 (92.00%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. ExPASy TrEMBL
Match: A0A1S4DVF3 (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488568 PE=3 SV=1) HSP 1 Score: 386.0 bits (990), Expect = 1.8e-103 Identity = 193/225 (85.78%), Postives = 205/225 (91.11%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. ExPASy TrEMBL
Match: A0A5A7VEW4 (Glutamate receptor OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001790 PE=3 SV=1) HSP 1 Score: 317.8 bits (813), Expect = 6.0e-83 Identity = 153/224 (68.30%), Postives = 183/224 (81.70%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. ExPASy TrEMBL
Match: A0A6J1GIG6 (Glutamate receptor OS=Cucurbita moschata OX=3662 GN=LOC111454464 PE=3 SV=1) HSP 1 Score: 314.3 bits (804), Expect = 6.6e-82 Identity = 153/224 (68.30%), Postives = 187/224 (83.48%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. ExPASy TrEMBL
Match: A0A1S3BCB6 (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103488369 PE=3 SV=1) HSP 1 Score: 314.3 bits (804), Expect = 6.6e-82 Identity = 152/224 (67.86%), Postives = 182/224 (81.25%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. TAIR 10
Match: AT2G24720.1 (glutamate receptor 2.2 ) HSP 1 Score: 223.4 bits (568), Expect = 3.0e-58 Identity = 110/222 (49.55%), Postives = 155/222 (69.82%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. TAIR 10
Match: AT5G27100.1 (glutamate receptor 2.1 ) HSP 1 Score: 218.4 bits (555), Expect = 9.5e-57 Identity = 109/222 (49.10%), Postives = 151/222 (68.02%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. TAIR 10
Match: AT2G24710.1 (glutamate receptor 2.3 ) HSP 1 Score: 217.2 bits (552), Expect = 2.1e-56 Identity = 108/222 (48.65%), Postives = 152/222 (68.47%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. TAIR 10
Match: AT5G11210.1 (glutamate receptor 2.5 ) HSP 1 Score: 211.5 bits (537), Expect = 1.2e-54 Identity = 114/239 (47.70%), Postives = 155/239 (64.85%), Query Frame = 0
BLAST of CsaV3_6G022440.1 vs. TAIR 10
Match: AT5G11180.1 (glutamate receptor 2.6 ) HSP 1 Score: 211.5 bits (537), Expect = 1.2e-54 Identity = 108/223 (48.43%), Postives = 149/223 (66.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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