CsaV3_6G021430.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G021430.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 14489629 .. 14490605 (+)
Sequence length	345
RNA-Seq Expression	CsaV3_6G021430.1
Synteny	CsaV3_6G021430.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAGACCTAGACCTAGAATATGTTTAGTAAAGCCAACATGAGCTTAGCTCAATTGGTACATGTGAACAAGGTGAACAAGAGGTCCCAAGTTCAACTCACACTGCTCCATTTATTACAATATCTTTACAAAAAAAATGTGAAAGTTTGTAATCTTGTGTCTTGCTAAAAAATTTGGGGCGCATGAGTACACCTGCACCTCCCAAGGAGGTTTATGACCAAATTGTTGTTGATCCCCAAAGACTTCTCTAGTATTGGTTCGTCGTTGGCTGGCGATTACTTGGATCTAAAAGTGAGATTTACATTCGGCTAGCATTGTAATCAAATTTAAAACAGGTCATTAATCTTACGTTCGGCTGGAAAAATAAATTGGATCTGCAATTGATGCAATTCCGACGTTTTGGGGGTATTATGTATGATTGTTCCTGTACTTTACGATTGATTATCCTCTGGCATAAGTTGGAGATTAGTTCTCGCACAGGCCTTCGACTTTTGGGTTCCCCTTCCAACGATGTGCTGGTGAATGGAAGACATGTCCTCTGGAAACGATGATGTCTCAGTGGTGAAGCAACGTGCGTTGTCTGGTTTCAAACGTGCATACGACGTTGCCGTGAATCGTAAGGCGATGGCGGCGAAGGGTGACCTACCATCTTCTTCACACAGAAATGGTCGATTGATGGGATTTAAACTGGTTCAATTGAACCGTCCATTAGGAAGTACTCCAAGGGCCCGTGAGTTAAATGCGCCTTCTCTTGAAGATGGGCGTATACAAAAAAAAAAAAGAACCTGGGTTAGATAGGTCAAGGTAAGTAATTGGGGCTCGGATGTGATCCAATTGATTAAACAGCCAATGATGTTGGTTGGGCCAAATCTAGCCGATGGGCCTGAGTATGAAAAGAGATTGGATGGGTTGAAGGTCACTAACAATGTTGGGCCGACTGGAGCTGATTCAAAGGTGGTCCGGTTGGAGTTGATTTAA

mRNA sequence

ATGGAAGACATGTCCTCTGGAAACGATGATGTCTCAGTGGTGAAGCAACGTGCGTTGTCTGGTTTCAAACGTGCATACGACGTTGCCGTGAATCGTAAGGCGATGGCGGCGAAGGGTGACCTACCATCTTCTTCACACAGAAATGGTCGATTGATGGGATTTAAACTGGTTCAATTGAACCGTCCATTAGGAAGTACTCCAAGGGCCCGTGAGTTAAATGCGCCTTCTCTTGAAGATGGGCCCGATGGGCCTGAGTATGAAAAGAGATTGGATGGGTTGAAGGTCACTAACAATGTTGGGCCGACTGGAGCTGATTCAAAGGTGGTCCGGTTGGAGTTGATTTAA

Coding sequence (CDS)

ATGGAAGACATGTCCTCTGGAAACGATGATGTCTCAGTGGTGAAGCAACGTGCGTTGTCTGGTTTCAAACGTGCATACGACGTTGCCGTGAATCGTAAGGCGATGGCGGCGAAGGGTGACCTACCATCTTCTTCACACAGAAATGGTCGATTGATGGGATTTAAACTGGTTCAATTGAACCGTCCATTAGGAAGTACTCCAAGGGCCCGTGAGTTAAATGCGCCTTCTCTTGAAGATGGGCCCGATGGGCCTGAGTATGAAAAGAGATTGGATGGGTTGAAGGTCACTAACAATGTTGGGCCGACTGGAGCTGATTCAAAGGTGGTCCGGTTGGAGTTGATTTAA

Protein sequence

MEDMSSGNDDVSVVKQRALSGFKRAYDVAVNRKAMAAKGDLPSSSHRNGRLMGFKLVQLNRPLGSTPRARELNAPSLEDGPDGPEYEKRLDGLKVTNNVGPTGADSKVVRLELI*

Homology

[Close]

BLAST of CsaV3_6G021430.1 vs. NCBI nr
Match: KAE8647046.1 (hypothetical protein Csa_022978 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 9.1e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MEDMSSGNDDVSVVKQRALSGFKRAYDVAVNRKAMAAKGDLPSSSHRNGRLMGFKLVQLN 60
           MEDMSSGNDDVSVVKQRALSGFKRAYDVAVNRKAMAAKGDLPSSSHRNGRLMGFKLVQLN
Sbjct: 1   MEDMSSGNDDVSVVKQRALSGFKRAYDVAVNRKAMAAKGDLPSSSHRNGRLMGFKLVQLN 60

Query: 61  RPLGSTPRARELNAPSLEDGPDGPEYEKRLDGLKVTNNVGPTGADSKVVRLELI 115
           RPLGSTPRARELNAPSLEDGPDGPEYEKRLDGLKVTNNVGPTGADSKVVRLELI
Sbjct: 61  RPLGSTPRARELNAPSLEDGPDGPEYEKRLDGLKVTNNVGPTGADSKVVRLELI 114

[Close]

BLAST of CsaV3_6G021430.1 vs. ExPASy TrEMBL
Match: A0A0A0KC36 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G284720 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.2e-54
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 4   MSSGNDDVSVVKQRALSGFKRAYDVAVNRKAMAAKGDLPSSSHRNGRLMGFKLVQLNRPL 63
           MSSGNDDVSVVKQRALSGFKRAYDVAVNRKAMAAKGDLPSSSHRNGRLMGFKLVQLNRPL
Sbjct: 1   MSSGNDDVSVVKQRALSGFKRAYDVAVNRKAMAAKGDLPSSSHRNGRLMGFKLVQLNRPL 60

Query: 64  GSTPRARELNAPSLEDGPDGPEYEKRLDGLKVTNNVGPTGADSKVVRLELI 115
           GSTPRARELNAPSLEDGPDGPEYEKRLDGLKVTNNVGPTGADSKVVRLELI
Sbjct: 61  GSTPRARELNAPSLEDGPDGPEYEKRLDGLKVTNNVGPTGADSKVVRLELI 111

The following BLAST results are available for this feature:

BLAST of CsaV3_6G021430.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647046.1	9.1e-56	100.00	hypothetical protein Csa_022978 [Cucumis sativus]	[more]

BLAST of CsaV3_6G021430.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G021430.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC36	3.2e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G284720 PE=4 SV=1	[more]

BLAST of CsaV3_6G021430.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..86

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_6G021430	CsaV3_6G021430	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G021430.1.exon1	CsaV3_6G021430.1.exon1	exon
CsaV3_6G021430.1.exon2	CsaV3_6G021430.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G021430.1.cds1	CsaV3_6G021430.1.cds1	CDS
CsaV3_6G021430.1.cds2	CsaV3_6G021430.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G021430.1	CsaV3_6G021430.1-protein	polypeptide