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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCGTCGACAAACGTTCACCAAATGTACATCCTACATGCTGGAATGATTGTTGGGAGAACCATGTCAGAATACCCATTCCAATCGAAGGAAAATCACAGCGTCGCAAATTTCCACCCCTCAACGCCTAGTTTGTCAACTACAGAACCGCGTTGGCGGAAACATCACTTCCAACGTCATCATGTGACGTCGGGAGTATTGTTTCCCTCGATGGAACAACATGCGTCGAGACATGGGTTCTTCTGA mRNA sequence ATGGCGTCGACAAACGTTCACCAAATGTACATCCTACATGCTGGAATGATTGTTGGGAGAACCATGTCAGAATACCCATTCCAATCGAAGGAAAATCACAGCGTCGCAAATTTCCACCCCTCAACGCCTAGTTTGTCAACTACAGAACCGCGTTGGCGGAAACATCACTTCCAACGTCATCATGTGACGTCGGGAGTATTGTTTCCCTCGATGGAACAACATGCGTCGAGACATGGGTTCTTCTGA Coding sequence (CDS) ATGGCGTCGACAAACGTTCACCAAATGTACATCCTACATGCTGGAATGATTGTTGGGAGAACCATGTCAGAATACCCATTCCAATCGAAGGAAAATCACAGCGTCGCAAATTTCCACCCCTCAACGCCTAGTTTGTCAACTACAGAACCGCGTTGGCGGAAACATCACTTCCAACGTCATCATGTGACGTCGGGAGTATTGTTTCCCTCGATGGAACAACATGCGTCGAGACATGGGTTCTTCTGA Protein sequence MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRHHVTSGVLFPSMEQHASRHGFF*
Homology
BLAST of CsaV3_5G006300.1 vs. NCBI nr
Match: KGN50470.1 (hypothetical protein Csa_000445 [Cucumis sativus]) HSP 1 Score: 174.1 bits (440), Expect = 5.0e-40 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
Query: 1 MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRH 60
MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRH
Sbjct: 1 MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRH 60
Query: 61 HVTSGVLFPSMEQHASRHGFF 82
HVTSGVLFPSMEQHASRHGFF
Sbjct: 61 HVTSGVLFPSMEQHASRHGFF 81
BLAST of CsaV3_5G006300.1 vs. ExPASy TrEMBL
Match: A0A0A0KLD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175920 PE=4 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 2.4e-40 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
Query: 1 MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRH 60
MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRH
Sbjct: 1 MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRH 60
Query: 61 HVTSGVLFPSMEQHASRHGFF 82
HVTSGVLFPSMEQHASRHGFF
Sbjct: 61 HVTSGVLFPSMEQHASRHGFF 81
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN50470.1 | 5.0e-40 | 100.00 | hypothetical protein Csa_000445 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KLD6 | 2.4e-40 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175920 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_5G006300.1.exon1 | CsaV3_5G006300.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_5G006300.1.cds1 | CsaV3_5G006300.1.cds1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_5G006300.1 | CsaV3_5G006300.1-protein | polypeptide |
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