CsaV3_5G006300 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G006300
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 4174683 .. 4174928 (-)
RNA-Seq ExpressionCsaV3_5G006300
SyntenyCsaV3_5G006300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCGACAAACGTTCACCAAATGTACATCCTACATGCTGGAATGATTGTTGGGAGAACCATGTCAGAATACCCATTCCAATCGAAGGAAAATCACAGCGTCGCAAATTTCCACCCCTCAACGCCTAGTTTGTCAACTACAGAACCGCGTTGGCGGAAACATCACTTCCAACGTCATCATGTGACGTCGGGAGTATTGTTTCCCTCGATGGAACAACATGCGTCGAGACATGGGTTCTTCTGA

mRNA sequence

ATGGCGTCGACAAACGTTCACCAAATGTACATCCTACATGCTGGAATGATTGTTGGGAGAACCATGTCAGAATACCCATTCCAATCGAAGGAAAATCACAGCGTCGCAAATTTCCACCCCTCAACGCCTAGTTTGTCAACTACAGAACCGCGTTGGCGGAAACATCACTTCCAACGTCATCATGTGACGTCGGGAGTATTGTTTCCCTCGATGGAACAACATGCGTCGAGACATGGGTTCTTCTGA

Coding sequence (CDS)

ATGGCGTCGACAAACGTTCACCAAATGTACATCCTACATGCTGGAATGATTGTTGGGAGAACCATGTCAGAATACCCATTCCAATCGAAGGAAAATCACAGCGTCGCAAATTTCCACCCCTCAACGCCTAGTTTGTCAACTACAGAACCGCGTTGGCGGAAACATCACTTCCAACGTCATCATGTGACGTCGGGAGTATTGTTTCCCTCGATGGAACAACATGCGTCGAGACATGGGTTCTTCTGA

Protein sequence

MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRHHVTSGVLFPSMEQHASRHGFF*
Homology
[Close]
BLAST of CsaV3_5G006300 vs. NCBI nr
Match: KGN50470.1 (hypothetical protein Csa_000445 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 5.0e-40
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRH 60
          MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRH
Sbjct: 1  MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRH 60

Query: 61 HVTSGVLFPSMEQHASRHGFF 82
          HVTSGVLFPSMEQHASRHGFF
Sbjct: 61 HVTSGVLFPSMEQHASRHGFF 81

[Close]
BLAST of CsaV3_5G006300 vs. ExPASy TrEMBL
Match: A0A0A0KLD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175920 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.4e-40
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRH 60
          MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRH
Sbjct: 1  MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRH 60

Query: 61 HVTSGVLFPSMEQHASRHGFF 82
          HVTSGVLFPSMEQHASRHGFF
Sbjct: 61 HVTSGVLFPSMEQHASRHGFF 81

The following BLAST results are available for this feature:
BLAST of CsaV3_5G006300 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50470.15.0e-40100.00hypothetical protein Csa_000445 [Cucumis sativus][more]
BLAST of CsaV3_5G006300 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G006300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLD62.4e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175920 PE=4 SV=1[more]
BLAST of CsaV3_5G006300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G006300.1CsaV3_5G006300.1mRNA