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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGACTGGCGACTGTAGTTGGATGCAGCGGGAACATTGCAACTCCGTCAGCACCAAATCCGGCACTCCACACGCTCCACACGTGGAAATGTCTCGTCGGTACGGTCACAGCCCTTTTCCCTTTTCCATATTTCTTACACACGTGCCCATTCACACACGTGTCAAAGTGTCGGTAGCCATCTAATTGAGCACCTTCCCAAGCTGCATCTTCACTCTACCGATCACCGCCACGTGTCAATCATGTAG mRNA sequence ATGACTGGCGACTGTAGTTGGATGCAGCGGGAACATTGCAACTCCGTCAGCACCAAATCCGGCACTCCACACGCTCCACACGTGGAAATGTCTCGTCGCCATCTAATTGAGCACCTTCCCAAGCTGCATCTTCACTCTACCGATCACCGCCACGTGTCAATCATGTAG Coding sequence (CDS) ATGACTGGCGACTGTAGTTGGATGCAGCGGGAACATTGCAACTCCGTCAGCACCAAATCCGGCACTCCACACGCTCCACACGTGGAAATGTCTCGTCGCCATCTAATTGAGCACCTTCCCAAGCTGCATCTTCACTCTACCGATCACCGCCACGTGTCAATCATGTAG Protein sequence MTGDCSWMQREHCNSVSTKSGTPHAPHVEMSRRHLIEHLPKLHLHSTDHRHVSIM*
Homology
BLAST of CsaV3_5G005870.1 vs. NCBI nr
Match: KGN50429.1 (hypothetical protein Csa_000504 [Cucumis sativus]) HSP 1 Score: 122.1 bits (305), Expect = 1.5e-24 Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 Query: 1 MTGDCSWMQREHCNSVSTKSGTPHAPHVEMSRRHLIEHLPKLHLHSTDHRHVSIM 56 MTGDCSWMQREHCNSVSTKSGTPHAPHVEMSRRHLIEHLPKLHLHSTDHRHVSIM Sbjct: 1 MTGDCSWMQREHCNSVSTKSGTPHAPHVEMSRRHLIEHLPKLHLHSTDHRHVSIM 55
BLAST of CsaV3_5G005870.1 vs. ExPASy TrEMBL
Match: A0A0A0KNG2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G173560 PE=4 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 7.4e-25 Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 Query: 1 MTGDCSWMQREHCNSVSTKSGTPHAPHVEMSRRHLIEHLPKLHLHSTDHRHVSIM 56 MTGDCSWMQREHCNSVSTKSGTPHAPHVEMSRRHLIEHLPKLHLHSTDHRHVSIM Sbjct: 1 MTGDCSWMQREHCNSVSTKSGTPHAPHVEMSRRHLIEHLPKLHLHSTDHRHVSIM 55
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN50429.1 | 1.5e-24 | 100.00 | hypothetical protein Csa_000504 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KNG2 | 7.4e-25 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G173560 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CsaV3_5G005870.1.exon1 | CsaV3_5G005870.1.exon1 | exon |
CsaV3_5G005870.1.exon2 | CsaV3_5G005870.1.exon2 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CsaV3_5G005870.1.cds1 | CsaV3_5G005870.1.cds1 | CDS |
CsaV3_5G005870.1.cds2 | CsaV3_5G005870.1.cds2 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
CsaV3_5G005870.1 | CsaV3_5G005870.1-protein | polypeptide |
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