CsaV3_4G036620.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G036620.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 25742063 .. 25742320 (+)
Sequence length177
RNA-Seq ExpressionCsaV3_4G036620.1
SyntenyCsaV3_4G036620.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGATCAGTTCCTACAGGTTGCAATGTTGATTGATAAAATTGGTCTCTACCAAGGCTACTATGGAAGATATTTTCTTTTGTTTCGTTTTGGGTCTAAGACAATCCTTTAGGCATGGGTATGTCTCATCGAAATTTTGTTTTAGTTGACCTTAGTCCATTATCTAGGCTCGTTTTGGTCATCGGTGTCGCTTTTGGTCCAAATTTTGTTGCTTTTATAGTATGTGATATGCTCTTTGATCCAAAGTCATCATGA

mRNA sequence

ATGTCGAGATCAGTTCCTACAGACAATCCTTTAGGCATGGGTATGTCTCATCGAAATTTTGTTTTAGTTGACCTTAGTCCATTATCTAGGCTCGTTTTGGTCATCGGTGTCGCTTTTGGTCCAAATTTTGTTGCTTTTATAGTATGTGATATGCTCTTTGATCCAAAGTCATCATGA

Coding sequence (CDS)

ATGTCGAGATCAGTTCCTACAGACAATCCTTTAGGCATGGGTATGTCTCATCGAAATTTTGTTTTAGTTGACCTTAGTCCATTATCTAGGCTCGTTTTGGTCATCGGTGTCGCTTTTGGTCCAAATTTTGTTGCTTTTATAGTATGTGATATGCTCTTTGATCCAAAGTCATCATGA

Protein sequence

MSRSVPTDNPLGMGMSHRNFVLVDLSPLSRLVLVIGVAFGPNFVAFIVCDMLFDPKSS*
Homology
[Close]
BLAST of CsaV3_4G036620.1 vs. NCBI nr
Match: KGN55435.1 (hypothetical protein Csa_012187 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 8.0e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MSRSVPTDNPLGMGMSHRNFVLVDLSPLSRLVLVIGVAFGPNFVAFIVCDMLFDPKSS 59
          MSRSVPTDNPLGMGMSHRNFVLVDLSPLSRLVLVIGVAFGPNFVAFIVCDMLFDPKSS
Sbjct: 1  MSRSVPTDNPLGMGMSHRNFVLVDLSPLSRLVLVIGVAFGPNFVAFIVCDMLFDPKSS 58

[Close]
BLAST of CsaV3_4G036620.1 vs. ExPASy TrEMBL
Match: A0A0A0L0E0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652010 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.9e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MSRSVPTDNPLGMGMSHRNFVLVDLSPLSRLVLVIGVAFGPNFVAFIVCDMLFDPKSS 59
          MSRSVPTDNPLGMGMSHRNFVLVDLSPLSRLVLVIGVAFGPNFVAFIVCDMLFDPKSS
Sbjct: 1  MSRSVPTDNPLGMGMSHRNFVLVDLSPLSRLVLVIGVAFGPNFVAFIVCDMLFDPKSS 58

The following BLAST results are available for this feature:
BLAST of CsaV3_4G036620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55435.18.0e-24100.00hypothetical protein Csa_012187 [Cucumis sativus][more]
BLAST of CsaV3_4G036620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G036620.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0E03.9e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652010 PE=4 SV=1[more]
BLAST of CsaV3_4G036620.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G036620CsaV3_4G036620gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G036620.1.exon1CsaV3_4G036620.1.exon1exon
CsaV3_4G036620.1.exon2CsaV3_4G036620.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G036620.1.cds1CsaV3_4G036620.1.cds1CDS
CsaV3_4G036620.1.cds2CsaV3_4G036620.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G036620.1CsaV3_4G036620.1-proteinpolypeptide