CsaV3_4G027470.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G027470.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	LEA_2 domain-containing protein
Location	chr4: 16614026 .. 16615654 (-)
Sequence length	648
RNA-Seq Expression	CsaV3_4G027470.1
Synteny	CsaV3_4G027470.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACAATTTAAAAAAAAAGTAAGAAAAATTGAAACTTGAGTTTCTCGTAATACAAAAAATTGAGTAAACTAAAAAAAAGAAAAGTAAAAGGACTAAATAGAAATTTCATAAATTACAAGGACGAAAGTGAAAACCAAGCCATAGGGCGTAATAAATATTAATGGTTGCTAAAAGATGAAAGAAGAAGAAGAAGAAGGAAATGGATAAACACTTTTCTCCATCTACCTGTTTCCTACTCCAAAATTAATTTCAATTAGTTGAGAGTTAGAATAATCCCCCAATTTTTCAAATGTCTCCATAAATTCCCAATTTCTCACTATTCTTCTCCCAAAATCTGCCATGGAAATCGCTTCTTCCTCCTCCTCTTTAATCAAAGACCCCAAATCCACTCAATCCACCGCCGCCGCCGCCACCCGTTCCCGGAAACGCCGCAACACCTGCATCGGAATCTCCATCGCCATCCTCCTCCTTCTCATCATCATAATCATCATTCTCGCCTTCACAGTCTTCAAAGCCAAACGCCCAATCACCACCGTCAATTCCGTTGCCCTAGCCGATCTCGACGTGTCGCTAAACCTAGCCGGAGTCTCCGTCGACATCAACGTCACTCTAATCGCCGACATCGCAATCACGAACCCTAACAAGGTCGGATTCAGCTACAAGAACAGCACCGCGTTTTTGAATTACAGAGGGGAATTGGTCGGAGAAGCGCCGATTATGGCTGGAAAGATCGACGCGGGGGAGAGGAAGGAGATGAATATCACGCTGACGATTATGGCAGATCGATTACTGAAGACGACGACGGTTTTTACGGATGCGGTGGCGGGATCTATGCCGTTGAATACGTACACGAGGATTTCAGGTAAGGTGAAGATTTTGGGGATTTTTAATATTCATGTGGTTTCAAGTACGTCTTGTGATTTCAATGTGGATATATCGGAGAGGAAAATTGGAGATCAACAGTGTAATTATCATACTAAGATCTGATTGATTGATTGATACAGCTTCTTCTTGTTTTGTTCTTAGTAAATTATGAAAGAGATTTGTAGGTTGAATTAGGGATGTTTTATAGAGTGTTGTAATTGATTGATTTGGTACTTAGTTACTATTCTTGTACTAAACTTCCCTCTCTCAATGGTTGTTATTTTCTTAATGTTAAATTACAAGTTTAATCCTAAATGGTGAGCATCAATACCATCGGTAATCCATTTTTTGACCAAACCCTTCTAGTCCATTTATGAAAAACAATGGGTCGATTTAGATAGTTTAACCCTAAAGGTTGTTTGCTTGTGACATTGATTCACCCTACCTTATATTGTGACGTTTGTGTGTACTAACATCTTTGTTTGAATTGAACCCTTAAAATGACTCAAGGGTAATGGAATTGCAATTAAAGAGTTAAAAATATGAAATTGGTTTTTAGGTGATTGGAGAGTGTTTTTAAAGTTATATTGAATATGAAAAAAGTAATTTTAATTGTTCTCTTAAATATGACTATTAAGATGTGTGCCCTTGAAATAAGTACTTTTTTCAAAAATAGAAAGGAAAAAAAAAGAAATTATTTACCTCTCAATAAAAACAAAATTAATAGCATTACACTTTTTTTTCTATTTTTTCTTTAAATAATCA

mRNA sequence

ATGGAAATCGCTTCTTCCTCCTCCTCTTTAATCAAAGACCCCAAATCCACTCAATCCACCGCCGCCGCCGCCACCCGTTCCCGGAAACGCCGCAACACCTGCATCGGAATCTCCATCGCCATCCTCCTCCTTCTCATCATCATAATCATCATTCTCGCCTTCACAGTCTTCAAAGCCAAACGCCCAATCACCACCGTCAATTCCGTTGCCCTAGCCGATCTCGACGTGTCGCTAAACCTAGCCGGAGTCTCCGTCGACATCAACGTCACTCTAATCGCCGACATCGCAATCACGAACCCTAACAAGGTCGGATTCAGCTACAAGAACAGCACCGCGTTTTTGAATTACAGAGGGGAATTGGTCGGAGAAGCGCCGATTATGGCTGGAAAGATCGACGCGGGGGAGAGGAAGGAGATGAATATCACGCTGACGATTATGGCAGATCGATTACTGAAGACGACGACGGTTTTTACGGATGCGGTGGCGGGATCTATGCCGTTGAATACGTACACGAGGATTTCAGGTAAGGTGAAGATTTTGGGGATTTTTAATATTCATGTGGTTTCAAGTACGTCTTGTGATTTCAATGTGGATATATCGGAGAGGAAAATTGGAGATCAACAGTGTAATTATCATACTAAGATCTGA

Coding sequence (CDS)

ATGGAAATCGCTTCTTCCTCCTCCTCTTTAATCAAAGACCCCAAATCCACTCAATCCACCGCCGCCGCCGCCACCCGTTCCCGGAAACGCCGCAACACCTGCATCGGAATCTCCATCGCCATCCTCCTCCTTCTCATCATCATAATCATCATTCTCGCCTTCACAGTCTTCAAAGCCAAACGCCCAATCACCACCGTCAATTCCGTTGCCCTAGCCGATCTCGACGTGTCGCTAAACCTAGCCGGAGTCTCCGTCGACATCAACGTCACTCTAATCGCCGACATCGCAATCACGAACCCTAACAAGGTCGGATTCAGCTACAAGAACAGCACCGCGTTTTTGAATTACAGAGGGGAATTGGTCGGAGAAGCGCCGATTATGGCTGGAAAGATCGACGCGGGGGAGAGGAAGGAGATGAATATCACGCTGACGATTATGGCAGATCGATTACTGAAGACGACGACGGTTTTTACGGATGCGGTGGCGGGATCTATGCCGTTGAATACGTACACGAGGATTTCAGGTAAGGTGAAGATTTTGGGGATTTTTAATATTCATGTGGTTTCAAGTACGTCTTGTGATTTCAATGTGGATATATCGGAGAGGAAAATTGGAGATCAACAGTGTAATTATCATACTAAGATCTGA

Protein sequence

MEIASSSSSLIKDPKSTQSTAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTVFKAKRPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGELVGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKILGIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI*

Homology

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BLAST of CsaV3_4G027470.1 vs. NCBI nr
Match: XP_004142665.1 (uncharacterized protein LOC101208230 [Cucumis sativus] >KGN54479.1 hypothetical protein Csa_012636 [Cucumis sativus])

HSP 1 Score: 394.0 bits (1011), Expect = 8.1e-106
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MEIASSSSSLIKDPKSTQSTAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTVFKAK 60
           MEIASSSSSLIKDPKSTQSTAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTVFKAK
Sbjct: 1   MEIASSSSSLIKDPKSTQSTAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTVFKAK 60

Query: 61  RPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGEL 120
           RPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGEL
Sbjct: 61  RPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGEL 120

Query: 121 VGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKIL 180
           VGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKIL
Sbjct: 121 VGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKIL 180

Query: 181 GIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI 216
           GIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI
Sbjct: 181 GIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI 215

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BLAST of CsaV3_4G027470.1 vs. NCBI nr
Match: XP_008463309.1 (PREDICTED: uncharacterized protein LOC103501497 [Cucumis melo])

HSP 1 Score: 370.2 bits (949), Expect = 1.2e-98
Identity = 204/216 (94.44%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1   MEIASSSSSLIKDPKSTQS-TAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTVFKA 60
           MEIASSSSS IKDPKSTQS  AAAA RSRKRRNTCIGISIAILLLLII+IIILAFTVFKA
Sbjct: 1   MEIASSSSSSIKDPKSTQSAAAAAAARSRKRRNTCIGISIAILLLLIILIIILAFTVFKA 60

Query: 61  KRPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGE 120
           KRPITTVNSVALADLDVSLNLA VSVDINVTLIA IAITNPNKVGFSYKNSTAFLNYRGE
Sbjct: 61  KRPITTVNSVALADLDVSLNLARVSVDINVTLIAGIAITNPNKVGFSYKNSTAFLNYRGE 120

Query: 121 LVGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKI 180
           LVGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVF+D VAGSMPLNTY RISGKVKI
Sbjct: 121 LVGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARISGKVKI 180

Query: 181 LGIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI 216
           LGIFNIHVVS+TSCDFNVDISERK+GDQQCNYHTKI
Sbjct: 181 LGIFNIHVVSTTSCDFNVDISERKVGDQQCNYHTKI 216

[Close]

BLAST of CsaV3_4G027470.1 vs. NCBI nr
Match: XP_038882665.1 (uncharacterized protein LOC120073854 [Benincasa hispida])

HSP 1 Score: 342.4 bits (877), Expect = 2.8e-90
Identity = 184/215 (85.58%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1   MEIASSSSSLIKDPKSTQSTAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTVFKAK 60
           MEIASSS+   KDPKSTQS AAA  RSR+RRNTCIGISIA ++LL+++I+ILAFTVFKAK
Sbjct: 1   MEIASSSN---KDPKSTQSIAAA--RSRRRRNTCIGISIATVVLLVVLIVILAFTVFKAK 60

Query: 61  RPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGEL 120
           RPIT +NSV LADLDVSLNLA VSVDINVTLIAD+AITNPNKVGFSY NSTAFLNYRGEL
Sbjct: 61  RPITAINSVTLADLDVSLNLARVSVDINVTLIADVAITNPNKVGFSYSNSTAFLNYRGEL 120

Query: 121 VGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKIL 180
           VGEAPI AG+IDAG+RKEMNITLTIMADRLLKTTTVF+D VAG+MPLNTYTRISGKV+IL
Sbjct: 121 VGEAPITAGRIDAGQRKEMNITLTIMADRLLKTTTVFSDVVAGTMPLNTYTRISGKVRIL 180

Query: 181 GIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI 216
           GIFNIHVVS+TSCDFNV ISERK+GDQQCNYHTKI
Sbjct: 181 GIFNIHVVSTTSCDFNVSISERKVGDQQCNYHTKI 210

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BLAST of CsaV3_4G027470.1 vs. NCBI nr
Match: XP_023518218.1 (uncharacterized protein LOC111781758 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.9 bits (764), Expect = 3.5e-77
Identity = 159/215 (73.95%), Postives = 188/215 (87.44%), Query Frame = 0


Query: 1   MEIASSSSSLIKDPKSTQSTAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTVFKAK 60
           MEIASSSS+  KDPKS         RSR+RRNTCIG+SIA +LLLI++I+ILAFTVFKAK
Sbjct: 16  MEIASSSST--KDPKS--------IRSRRRRNTCIGVSIATVLLLIVLIVILAFTVFKAK 75

Query: 61  RPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGEL 120
           RPITT+NSVALADLD+SLN+A  +V +N+TLI D++ITNPNKVGFSY NSTA LNYRGEL
Sbjct: 76  RPITTINSVALADLDLSLNIARSAVGLNITLIVDVSITNPNKVGFSYSNSTALLNYRGEL 135

Query: 121 VGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKIL 180
           +GEAPI +G+I+A + K MNIT+TIMADRLL+++TV +D VAGSMPLNTYTRISGKV+IL
Sbjct: 136 IGEAPIPSGRINANQSKRMNITVTIMADRLLRSSTVLSDVVAGSMPLNTYTRISGKVRIL 195

Query: 181 GIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI 216
           GIF I VVSSTSCDF +DIS+RKIGDQQC+YHTKI
Sbjct: 196 GIFKIRVVSSTSCDFTIDISDRKIGDQQCSYHTKI 220

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BLAST of CsaV3_4G027470.1 vs. NCBI nr
Match: XP_022966458.1 (uncharacterized protein LOC111466106 [Cucurbita maxima])

HSP 1 Score: 296.2 bits (757), Expect = 2.3e-76
Identity = 157/215 (73.02%), Postives = 187/215 (86.98%), Query Frame = 0


Query: 1   MEIASSSSSLIKDPKSTQSTAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTVFKAK 60
           MEIASS++   KDPKS         RSR+RRNTCIG+SIA +LLLI++I+ILAFTVFKAK
Sbjct: 1   MEIASSTT---KDPKS--------IRSRRRRNTCIGVSIATVLLLIVLIVILAFTVFKAK 60

Query: 61  RPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGEL 120
           RPITT+NSVALADLD+SLN+A  +V +N+TLI D++ITNPNKVGFSY NSTA LNYRGEL
Sbjct: 61  RPITTINSVALADLDLSLNIARSAVGLNITLIVDVSITNPNKVGFSYSNSTALLNYRGEL 120

Query: 121 VGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKIL 180
           +GEAPI +G+I+A + K MNIT+TIMADRLL+++TV +D VAGSMPLNTYTRISGKV+IL
Sbjct: 121 IGEAPIPSGRINANQSKRMNITVTIMADRLLRSSTVLSDVVAGSMPLNTYTRISGKVRIL 180

Query: 181 GIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI 216
           GIF I VVSSTSCDF +DIS+RKIGDQQC+YHTKI
Sbjct: 181 GIFKIRVVSSTSCDFTIDISDRKIGDQQCSYHTKI 204

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BLAST of CsaV3_4G027470.1 vs. ExPASy TrEMBL
Match: A0A0A0L094 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G337360 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.9e-106
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MEIASSSSSLIKDPKSTQSTAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTVFKAK 60
           MEIASSSSSLIKDPKSTQSTAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTVFKAK
Sbjct: 1   MEIASSSSSLIKDPKSTQSTAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTVFKAK 60

Query: 61  RPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGEL 120
           RPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGEL
Sbjct: 61  RPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGEL 120

Query: 121 VGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKIL 180
           VGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKIL
Sbjct: 121 VGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKIL 180

Query: 181 GIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI 216
           GIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI
Sbjct: 181 GIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI 215

[Close]

BLAST of CsaV3_4G027470.1 vs. ExPASy TrEMBL
Match: A0A1S3CJB5 (uncharacterized protein LOC103501497 OS=Cucumis melo OX=3656 GN=LOC103501497 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 6.0e-99
Identity = 204/216 (94.44%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1   MEIASSSSSLIKDPKSTQS-TAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTVFKA 60
           MEIASSSSS IKDPKSTQS  AAAA RSRKRRNTCIGISIAILLLLII+IIILAFTVFKA
Sbjct: 1   MEIASSSSSSIKDPKSTQSAAAAAAARSRKRRNTCIGISIAILLLLIILIIILAFTVFKA 60

Query: 61  KRPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGE 120
           KRPITTVNSVALADLDVSLNLA VSVDINVTLIA IAITNPNKVGFSYKNSTAFLNYRGE
Sbjct: 61  KRPITTVNSVALADLDVSLNLARVSVDINVTLIAGIAITNPNKVGFSYKNSTAFLNYRGE 120

Query: 121 LVGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKI 180
           LVGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVF+D VAGSMPLNTY RISGKVKI
Sbjct: 121 LVGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFSDVVAGSMPLNTYARISGKVKI 180

Query: 181 LGIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI 216
           LGIFNIHVVS+TSCDFNVDISERK+GDQQCNYHTKI
Sbjct: 181 LGIFNIHVVSTTSCDFNVDISERKVGDQQCNYHTKI 216

[Close]

BLAST of CsaV3_4G027470.1 vs. ExPASy TrEMBL
Match: A0A6J1HS80 (uncharacterized protein LOC111466106 OS=Cucurbita maxima OX=3661 GN=LOC111466106 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.1e-76
Identity = 157/215 (73.02%), Postives = 187/215 (86.98%), Query Frame = 0


Query: 1   MEIASSSSSLIKDPKSTQSTAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTVFKAK 60
           MEIASS++   KDPKS         RSR+RRNTCIG+SIA +LLLI++I+ILAFTVFKAK
Sbjct: 1   MEIASSTT---KDPKS--------IRSRRRRNTCIGVSIATVLLLIVLIVILAFTVFKAK 60

Query: 61  RPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGEL 120
           RPITT+NSVALADLD+SLN+A  +V +N+TLI D++ITNPNKVGFSY NSTA LNYRGEL
Sbjct: 61  RPITTINSVALADLDLSLNIARSAVGLNITLIVDVSITNPNKVGFSYSNSTALLNYRGEL 120

Query: 121 VGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKIL 180
           +GEAPI +G+I+A + K MNIT+TIMADRLL+++TV +D VAGSMPLNTYTRISGKV+IL
Sbjct: 121 IGEAPIPSGRINANQSKRMNITVTIMADRLLRSSTVLSDVVAGSMPLNTYTRISGKVRIL 180

Query: 181 GIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI 216
           GIF I VVSSTSCDF +DIS+RKIGDQQC+YHTKI
Sbjct: 181 GIFKIRVVSSTSCDFTIDISDRKIGDQQCSYHTKI 204

[Close]

BLAST of CsaV3_4G027470.1 vs. ExPASy TrEMBL
Match: A0A6J1DQ35 (uncharacterized protein LOC111023175 OS=Momordica charantia OX=3673 GN=LOC111023175 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.5e-76
Identity = 163/216 (75.46%), Postives = 185/216 (85.65%), Query Frame = 0


Query: 1   MEIASSSSSLIKDPKSTQSTAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTVFKAK 60
           MEIASS++   KD KST     AA RSR+RRN CIG S+  LLLL+I+I+ILAFTVFKA+
Sbjct: 1   MEIASSAT---KDLKST----TAAARSRRRRNICIGASLGALLLLVILILILAFTVFKAR 60

Query: 61  RPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGEL 120
           RPIT +NSVALADL VSL++A V+VDINVTLIA +A+TNPNKVGFSY NSTA LNYRGEL
Sbjct: 61  RPITAINSVALADLAVSLDIARVAVDINVTLIAAVAVTNPNKVGFSYSNSTALLNYRGEL 120

Query: 121 VGEAPIMAGKIDAGERKEMNITLTIMADRLL-KTTTVFTDAVAGSMPLNTYTRISGKVKI 180
           VGEAPI AG+IDA + K+MNITLTIMADRLL K+  VF+D VAGSMPLNTYTRISG+VKI
Sbjct: 121 VGEAPIPAGRIDADQSKDMNITLTIMADRLLSKSAAVFSDVVAGSMPLNTYTRISGRVKI 180

Query: 181 LGIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI 216
           LGIF IHVVS+TSCD  +DIS RKIGDQQCNYHTKI
Sbjct: 181 LGIFKIHVVSTTSCDLTIDISSRKIGDQQCNYHTKI 209

[Close]

BLAST of CsaV3_4G027470.1 vs. ExPASy TrEMBL
Match: A0A6J1EAI5 (uncharacterized protein LOC111432307 OS=Cucurbita moschata OX=3662 GN=LOC111432307 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.6e-75
Identity = 155/215 (72.09%), Postives = 185/215 (86.05%), Query Frame = 0


Query: 1   MEIASSSSSLIKDPKSTQSTAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTVFKAK 60
           MEIASS+    KDPKS         RSR+RRNTCIG+SIA +LLLI++I+ILAFTVFKAK
Sbjct: 16  MEIASST----KDPKS--------IRSRRRRNTCIGVSIATVLLLIVLIVILAFTVFKAK 75

Query: 61  RPITTVNSVALADLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGEL 120
           RPIT +NSVALADLD+SLN+A  +V +N+TLI D++ITNPNKVGFSY NSTA LNYRGEL
Sbjct: 76  RPITAINSVALADLDLSLNIARSAVGLNITLIVDVSITNPNKVGFSYSNSTALLNYRGEL 135

Query: 121 VGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKIL 180
           +GEAPI +G+I+A + K MNIT+TIMADRLL+++TV +D VAGS+PLNTYTRISGKV+IL
Sbjct: 136 IGEAPIPSGRINANQSKRMNITVTIMADRLLRSSTVLSDVVAGSIPLNTYTRISGKVRIL 195

Query: 181 GIFNIHVVSSTSCDFNVDISERKIGDQQCNYHTKI 216
           GIF I VVSSTSCDF +DIS+RKIGDQQC+YHTKI
Sbjct: 196 GIFKIRVVSSTSCDFTIDISDRKIGDQQCSYHTKI 218

[Close]

BLAST of CsaV3_4G027470.1 vs. TAIR 10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 181.8 bits (460), Expect = 5.9e-46
Identity = 93/203 (45.81%), Postives = 144/203 (70.94%), Query Frame = 0


Query: 15  KSTQSTAAAATRSRKRRN--TCIGISIAILLLLIIIIIILAFTVFKAKRPITTVNSVALA 74
           ++  +    A + R++RN   CI  +I ++LL+ I+I+ILAFT+FK KRP TT++SV + 
Sbjct: 33  ETQSANTGTAKKLRRKRNCKICICFTILLILLIAIVIVILAFTLFKPKRPTTTIDSVTVD 92

Query: 75  DLDVSLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGELVGEAPIMAGKID 134
            L  S+N   + V +N+TL  D+++ NPN++GFSY +S+A LNYRG+++GEAP+ A +I 
Sbjct: 93  RLQASVNPLLLKVLLNLTLNVDLSLKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIA 152

Query: 135 AGERKEMNITLTIMADRLLKTTTVFTDAVAGSMPLNTYTRISGKVKILGIFNIHVVSSTS 194
           A +   +NITLT+MADRLL  T + +D +AG +PLNT+ +++GKV +L IF I V SS+S
Sbjct: 153 ARKTVPLNITLTLMADRLLSETQLLSDVMAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSS 212

Query: 195 CDFNVDISERKIGDQQCNYHTKI 216
           CD ++ +S+R +  Q C Y TK+
Sbjct: 213 CDLSISVSDRNVTSQHCKYSTKL 235

[Close]

BLAST of CsaV3_4G027470.1 vs. TAIR 10
Match: AT2G46150.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-21
Identity = 69/199 (34.67%), Postives = 105/199 (52.76%), Query Frame = 0


Query: 14  PKSTQSTAAAATRSRKRRNTCIGISI-AILLLLIIIIIILAFTVFKAKRPITTVNSVALA 73
           P S +S +      R R      I + A  L+L  I++ L FTVF+ K PI  +N V + 
Sbjct: 17  PVSDESASNIKNTHRSRNRIKCSICVTATSLILTTIVLTLVFTVFRVKDPIIKMNGVMVN 76

Query: 74  DLDVSLNLAGVS-VDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGELVGEAPIMAGKI 133
            LD       V  +  N+++I D+++ NPN   F Y N+T  + Y+G LVGEA  + GK 
Sbjct: 77  GLDSVTGTNQVQLLGTNISMIVDVSVKNPNTASFKYSNTTTDIYYKGTLVGEAHGLPGKA 136

Query: 134 DAGERKEMNITLTIMADRLLKTTTVFTD-AVAGSMPLNTYTRISGKVKILGIFNIHVVSS 193
                  MN+T+ IM DR+L    +  + + +G + + +YTR+ GKVKI+GI   HV   
Sbjct: 137 RPHRTSRMNVTVDIMLDRILSDPGLGREISRSGLVNVWSYTRVGGKVKIMGIVKKHVTVK 196

Query: 194 TSCDFNVDISERKIGDQQC 210
            +C   V+I+ + I D  C
Sbjct: 197 MNCTMAVNITGQAIQDVDC 215

[Close]

BLAST of CsaV3_4G027470.1 vs. TAIR 10
Match: AT3G05975.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 71.6 bits (174), Expect = 8.5e-13
Identity = 51/188 (27.13%), Postives = 88/188 (46.81%), Query Frame = 0


Query: 29  KRRNTCIGISIAILLLLIIIIIILAFTVFKAKRPITTVNSVALADLDVSLNLAGVSVDIN 88
           KRR  CI   I  +L +I +  ++   VFK K PI    S  +  +  +++L    V +N
Sbjct: 3   KRRICCIVSGIIFVLFVIFMTALILAQVFKPKHPILQTVSSTVDGISTNISLP-YEVQLN 62

Query: 89  VTLIADIAITNPNKVGFSYKNSTAFLNYRGELVGEAPIMAGKIDAGERKEMNITLTIMAD 148
            TL  ++ + NPN   F YK     + YR  LVG   + +  + A     +   L +  D
Sbjct: 63  FTLTLEMLLKNPNVADFEYKTVENLVYYRDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLD 122

Query: 149 RLLKTT-TVFTDAVAGSMPLNTYTRISGKVKILGIFNIHVVSSTSCDFNVDISERKIGDQ 208
           + +     +  D + G + + T  ++ GK+ +LGIF I + S + C+  +      + DQ
Sbjct: 123 KFVANLGDIVQDVLHGKIVMETRAKMPGKITLLGIFKIPLDSISHCNLVLGFPSMVVEDQ 182

Query: 209 QCNYHTKI 216
            C+  TK+
Sbjct: 183 VCDLKTKL 189

[Close]

BLAST of CsaV3_4G027470.1 vs. TAIR 10
Match: AT1G64450.1 (Glycine-rich protein family )

HSP 1 Score: 62.0 bits (149), Expect = 6.8e-10
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 0


Query: 26  RSRKRRN-TCIGISIAILLLLIIIIIILAFTVFKAKRPITTVNSVALADLDVSLNLAGVS 85
           RS  R N     ++   LL+L+++++++ FTVFK K P  +VN+V L    VS N A   
Sbjct: 9   RSSGRTNLASCAVATVFLLILLVVLLVVYFTVFKPKDPKISVNAVQLPSFAVSNNTA--- 68

Query: 86  VDINVTLIADIAITNPNKVGFSYKNSTAFLNYRGELVGEAPIMAGKIDAGERKEMNITLT 145
              N +    +A+ NPN+  FS+ +S+  L Y G  VG   I AGKID+G  + M  T T
Sbjct: 69  ---NFSFSQYVAVRNPNRAVFSHYDSSIQLLYSGNQVGFMFIPAGKIDSGRIQYMAATFT 123

[Close]

BLAST of CsaV3_4G027470.1 vs. TAIR 10
Match: AT2G01080.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 45.4 bits (106), Expect = 6.6e-05
Identity = 51/223 (22.87%), Postives = 99/223 (44.39%), Query Frame = 0


Query: 4   ASSSSSLIKDPKSTQ-------STAAAATRSRKRRNTCIGISIAILLLLIIIIIILAFTV 63
           +SS + L  DP + Q       S +++++ S K    C+ +  A L LL++ ++++    
Sbjct: 6   SSSRAGLNGDPIAAQNQQPYYRSYSSSSSASLKGCCCCLFLLFAFLALLVLAVVLIVILA 65

Query: 64  FKAKRPITTVNSVALADLDV---SLNLAGVSVDINVTLIADIAITNPNKVGFSYKNSTAF 123
            K K+P   +  VA+  + +   S  L   +  +++T+       NPNKVG  Y  S+  
Sbjct: 66  VKPKKPQFDLQQVAVVYMGISNPSAVLDPTTASLSLTIRMLFTAVNPNKVGIRYGESSFT 125

Query: 124 LNYRGELVGEAPIMAGKIDAGERKEMNITLTIMADRLLKTTTVFTDAVAGS-----MPLN 183
           + Y+G  +G A +     DA   K  N+  TI  DR+        D V  +     + L 
Sbjct: 126 VMYKGMPLGRATVPGFYQDAHSTK--NVEATISVDRVNLMQAHAADLVRDASLNDRVELT 185

Query: 184 TYTRISGKVKILGIFNIHVVSSTSCDFNVDISERKIGDQQCNY 212
               +  K++++   +  V  S +C   +   ++ +  +QC +
Sbjct: 186 VRGDVGAKIRVMNFDSPGVQVSVNCGIGISPRKQALIYKQCGF 226

The following BLAST results are available for this feature:

BLAST of CsaV3_4G027470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142665.1	8.1e-106	100.00	uncharacterized protein LOC101208230 [Cucumis sativus] >KGN54479.1 hypothetical ...	[more]
XP_008463309.1	1.2e-98	94.44	PREDICTED: uncharacterized protein LOC103501497 [Cucumis melo]	[more]
XP_038882665.1	2.8e-90	85.58	uncharacterized protein LOC120073854 [Benincasa hispida]	[more]
XP_023518218.1	3.5e-77	73.95	uncharacterized protein LOC111781758 [Cucurbita pepo subsp. pepo]	[more]
XP_022966458.1	2.3e-76	73.02	uncharacterized protein LOC111466106 [Cucurbita maxima]	[more]

BLAST of CsaV3_4G027470.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G027470.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L094	3.9e-106	100.00	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G337360 PE=4 ...	[more]
A0A1S3CJB5	6.0e-99	94.44	uncharacterized protein LOC103501497 OS=Cucumis melo OX=3656 GN=LOC103501497 PE=...	[more]
A0A6J1HS80	1.1e-76	73.02	uncharacterized protein LOC111466106 OS=Cucurbita maxima OX=3661 GN=LOC111466106...	[more]
A0A6J1DQ35	5.5e-76	75.46	uncharacterized protein LOC111023175 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1EAI5	1.6e-75	72.09	uncharacterized protein LOC111432307 OS=Cucurbita moschata OX=3662 GN=LOC1114323...	[more]

BLAST of CsaV3_4G027470.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54200.1	5.9e-46	45.81	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G46150.1	1.3e-21	34.67	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G05975.1	8.5e-13	27.13	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G64450.1	6.8e-10	37.19	Glycine-rich protein family	[more]
AT2G01080.1	6.6e-05	22.87	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 95..187 e-value: 7.6E-10 score: 39.3
None	No IPR available	GENE3D	2.60.40.1820		coord: 49..200 e-value: 1.1E-10 score: 43.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 24..214
None	No IPR available	PANTHER	PTHR31852:SF122	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 24..214
None	No IPR available	SUPERFAMILY	117070	LEA14-like	coord: 85..155

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_4G027470	CsaV3_4G027470	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G027470.1.exon1	CsaV3_4G027470.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G027470.1.cds1	CsaV3_4G027470.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G027470.1	CsaV3_4G027470.1-protein	polypeptide