CsaV3_4G009170.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G009170.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	SNF1-related protein kinase regulatory subunit beta-2-like
Location	chr4: 6740912 .. 6741136 (+)
Sequence length	225
RNA-Seq Expression	CsaV3_4G009170.1
Synteny	CsaV3_4G009170.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATATGAACACAGAGAAGATGAGGAATGCGAACGCAGAGAAGATGAGGAATGTGAACGACAGAGGAGATGAGATGAGGAATGTGAATGGCATAGAAGATGGGGAATCTAGGGTTGTAGAAGATGAAGAAGTTGGTGGCCGTCGGGGTAGTTTGCCGAATGGATTGTCTATGTTGTTTAATGCCCATCTTGGCTATCATGCCGATAATCCAAACCTGTAG

mRNA sequence

ATGGAGAATATGAACACAGAGAAGATGAGGAATGCGAACGCAGAGAAGATGAGGAATGTGAACGACAGAGGAGATGAGATGAGGAATGTGAATGGCATAGAAGATGGGGAATCTAGGGTTGTAGAAGATGAAGAAGTTGGTGGCCGTCGGGGTAGTTTGCCGAATGGATTGTCTATGTTGTTTAATGCCCATCTTGGCTATCATGCCGATAATCCAAACCTGTAG

Coding sequence (CDS)

ATGGAGAATATGAACACAGAGAAGATGAGGAATGCGAACGCAGAGAAGATGAGGAATGTGAACGACAGAGGAGATGAGATGAGGAATGTGAATGGCATAGAAGATGGGGAATCTAGGGTTGTAGAAGATGAAGAAGTTGGTGGCCGTCGGGGTAGTTTGCCGAATGGATTGTCTATGTTGTTTAATGCCCATCTTGGCTATCATGCCGATAATCCAAACCTGTAG

Protein sequence

MENMNTEKMRNANAEKMRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSMLFNAHLGYHADNPNL*

Homology

[Close]

BLAST of CsaV3_4G009170.1 vs. NCBI nr
Match: KGN53678.1 (hypothetical protein Csa_014856 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 3.5e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MENMNTEKMRNANAEKMRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSML 60
          MENMNTEKMRNANAEKMRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSML
Sbjct: 1  MENMNTEKMRNANAEKMRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSML 60

Query: 61 FNAHLGYHADNPNL 75
          FNAHLGYHADNPNL
Sbjct: 61 FNAHLGYHADNPNL 74

[Close]

BLAST of CsaV3_4G009170.1 vs. NCBI nr
Match: XP_004134805.1 (SNF1-related protein kinase regulatory subunit beta-2 [Cucumis sativus] >KGN49035.1 hypothetical protein Csa_003301 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-05
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 17 MRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSMLFNAHLGYHADNP 73
          M NVN R DE  N +G E+      EDEEVGGRR SLP+GLS+  +AHLGYHA +P
Sbjct: 1  MGNVNGREDEDGNPSGAEE------EDEEVGGRRSSLPDGLSVPPDAHLGYHAGDP 50

[Close]

BLAST of CsaV3_4G009170.1 vs. NCBI nr
Match: XP_008440979.1 (PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis melo] >TYK12453.1 SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 17 MRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSMLFNAHLGYHADNP 73
          M NVN R DE  N +G E+      EDEEVGGRR SLP+GL+   +AHLGYHA +P
Sbjct: 1  MGNVNGREDEDGNPSGAEE------EDEEVGGRRSSLPDGLAAPPDAHLGYHAGDP 50

[Close]

BLAST of CsaV3_4G009170.1 vs. ExPASy TrEMBL
Match: A0A0A0KVT0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G101780 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MENMNTEKMRNANAEKMRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSML 60
          MENMNTEKMRNANAEKMRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSML
Sbjct: 1  MENMNTEKMRNANAEKMRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSML 60

Query: 61 FNAHLGYHADNPNL 75
          FNAHLGYHADNPNL
Sbjct: 61 FNAHLGYHADNPNL 74

[Close]

BLAST of CsaV3_4G009170.1 vs. ExPASy TrEMBL
Match: A0A0A0KH57 (AMPKBI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G511020 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-05
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 17 MRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSMLFNAHLGYHADNP 73
          M NVN R DE  N +G E+      EDEEVGGRR SLP+GLS+  +AHLGYHA +P
Sbjct: 1  MGNVNGREDEDGNPSGAEE------EDEEVGGRRSSLPDGLSVPPDAHLGYHAGDP 50

[Close]

BLAST of CsaV3_4G009170.1 vs. ExPASy TrEMBL
Match: A0A5D3CKN6 (SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00280 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.8e-05
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 17 MRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSMLFNAHLGYHADNP 73
          M NVN R DE  N +G E+      EDEEVGGRR SLP+GL+   +AHLGYHA +P
Sbjct: 1  MGNVNGREDEDGNPSGAEE------EDEEVGGRRSSLPDGLAAPPDAHLGYHAGDP 50

[Close]

BLAST of CsaV3_4G009170.1 vs. ExPASy TrEMBL
Match: A0A1S3B352 (SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo OX=3656 GN=LOC103485228 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.8e-05
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 17 MRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSMLFNAHLGYHADNP 73
          M NVN R DE  N +G E+      EDEEVGGRR SLP+GL+   +AHLGYHA +P
Sbjct: 1  MGNVNGREDEDGNPSGAEE------EDEEVGGRRSSLPDGLAAPPDAHLGYHAGDP 50

[Close]

BLAST of CsaV3_4G009170.1 vs. ExPASy TrEMBL
Match: A0A5A7SHF1 (SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold253G00670 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.7e-04
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 17 MRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSMLFNAHLGYHADNP 73
          M NVN R DE  N +G E+      EDEEVGGRR SLP+GL+   +AHLG HA +P
Sbjct: 1  MGNVNGREDEDGNPSGAEE------EDEEVGGRRSSLPDGLAAPPDAHLGCHAGDP 50

The following BLAST results are available for this feature:

BLAST of CsaV3_4G009170.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53678.1	3.5e-32	100.00	hypothetical protein Csa_014856 [Cucumis sativus]	[more]
XP_004134805.1	4.8e-05	58.93	SNF1-related protein kinase regulatory subunit beta-2 [Cucumis sativus] >KGN4903...	[more]
XP_008440979.1	1.8e-04	57.14	PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis m...	[more]

BLAST of CsaV3_4G009170.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G009170.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVT0	1.7e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G101780 PE=4 SV=1	[more]
A0A0A0KH57	2.3e-05	58.93	AMPKBI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G511020 PE=3...	[more]
A0A5D3CKN6	8.8e-05	57.14	SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo var. ...	[more]
A0A1S3B352	8.8e-05	57.14	SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo OX=36...	[more]
A0A5A7SHF1	9.7e-04	55.36	SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo var. ...	[more]

BLAST of CsaV3_4G009170.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..49

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_4G009170	CsaV3_4G009170	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G009170.1.exon1	CsaV3_4G009170.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G009170.1.cds1	CsaV3_4G009170.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G009170.1	CsaV3_4G009170.1-protein	polypeptide