CsaV3_4G009170 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G009170
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionSNF1-related protein kinase regulatory subunit beta-2-like
Locationchr4: 6740912 .. 6741136 (+)
RNA-Seq ExpressionCsaV3_4G009170
SyntenyCsaV3_4G009170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATATGAACACAGAGAAGATGAGGAATGCGAACGCAGAGAAGATGAGGAATGTGAACGACAGAGGAGATGAGATGAGGAATGTGAATGGCATAGAAGATGGGGAATCTAGGGTTGTAGAAGATGAAGAAGTTGGTGGCCGTCGGGGTAGTTTGCCGAATGGATTGTCTATGTTGTTTAATGCCCATCTTGGCTATCATGCCGATAATCCAAACCTGTAG

mRNA sequence

ATGGAGAATATGAACACAGAGAAGATGAGGAATGCGAACGCAGAGAAGATGAGGAATGTGAACGACAGAGGAGATGAGATGAGGAATGTGAATGGCATAGAAGATGGGGAATCTAGGGTTGTAGAAGATGAAGAAGTTGGTGGCCGTCGGGGTAGTTTGCCGAATGGATTGTCTATGTTGTTTAATGCCCATCTTGGCTATCATGCCGATAATCCAAACCTGTAG

Coding sequence (CDS)

ATGGAGAATATGAACACAGAGAAGATGAGGAATGCGAACGCAGAGAAGATGAGGAATGTGAACGACAGAGGAGATGAGATGAGGAATGTGAATGGCATAGAAGATGGGGAATCTAGGGTTGTAGAAGATGAAGAAGTTGGTGGCCGTCGGGGTAGTTTGCCGAATGGATTGTCTATGTTGTTTAATGCCCATCTTGGCTATCATGCCGATAATCCAAACCTGTAG

Protein sequence

MENMNTEKMRNANAEKMRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSMLFNAHLGYHADNPNL*
Homology
BLAST of CsaV3_4G009170 vs. NCBI nr
Match: KGN53678.1 (hypothetical protein Csa_014856 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 3.5e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MENMNTEKMRNANAEKMRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSML 60
          MENMNTEKMRNANAEKMRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSML
Sbjct: 1  MENMNTEKMRNANAEKMRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSML 60

Query: 61 FNAHLGYHADNPNL 75
          FNAHLGYHADNPNL
Sbjct: 61 FNAHLGYHADNPNL 74

BLAST of CsaV3_4G009170 vs. NCBI nr
Match: XP_004134805.1 (SNF1-related protein kinase regulatory subunit beta-2 [Cucumis sativus] >KGN49035.1 hypothetical protein Csa_003301 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-05
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 0

Query: 17 MRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSMLFNAHLGYHADNP 73
          M NVN R DE  N +G E+      EDEEVGGRR SLP+GLS+  +AHLGYHA +P
Sbjct: 1  MGNVNGREDEDGNPSGAEE------EDEEVGGRRSSLPDGLSVPPDAHLGYHAGDP 50

BLAST of CsaV3_4G009170 vs. NCBI nr
Match: XP_008440979.1 (PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis melo] >TYK12453.1 SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 17 MRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSMLFNAHLGYHADNP 73
          M NVN R DE  N +G E+      EDEEVGGRR SLP+GL+   +AHLGYHA +P
Sbjct: 1  MGNVNGREDEDGNPSGAEE------EDEEVGGRRSSLPDGLAAPPDAHLGYHAGDP 50

BLAST of CsaV3_4G009170 vs. ExPASy TrEMBL
Match: A0A0A0KVT0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G101780 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1  MENMNTEKMRNANAEKMRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSML 60
          MENMNTEKMRNANAEKMRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSML
Sbjct: 1  MENMNTEKMRNANAEKMRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSML 60

Query: 61 FNAHLGYHADNPNL 75
          FNAHLGYHADNPNL
Sbjct: 61 FNAHLGYHADNPNL 74

BLAST of CsaV3_4G009170 vs. ExPASy TrEMBL
Match: A0A0A0KH57 (AMPKBI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G511020 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-05
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 0

Query: 17 MRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSMLFNAHLGYHADNP 73
          M NVN R DE  N +G E+      EDEEVGGRR SLP+GLS+  +AHLGYHA +P
Sbjct: 1  MGNVNGREDEDGNPSGAEE------EDEEVGGRRSSLPDGLSVPPDAHLGYHAGDP 50

BLAST of CsaV3_4G009170 vs. ExPASy TrEMBL
Match: A0A5D3CKN6 (SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00280 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.8e-05
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 17 MRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSMLFNAHLGYHADNP 73
          M NVN R DE  N +G E+      EDEEVGGRR SLP+GL+   +AHLGYHA +P
Sbjct: 1  MGNVNGREDEDGNPSGAEE------EDEEVGGRRSSLPDGLAAPPDAHLGYHAGDP 50

BLAST of CsaV3_4G009170 vs. ExPASy TrEMBL
Match: A0A1S3B352 (SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo OX=3656 GN=LOC103485228 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.8e-05
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 17 MRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSMLFNAHLGYHADNP 73
          M NVN R DE  N +G E+      EDEEVGGRR SLP+GL+   +AHLGYHA +P
Sbjct: 1  MGNVNGREDEDGNPSGAEE------EDEEVGGRRSSLPDGLAAPPDAHLGYHAGDP 50

BLAST of CsaV3_4G009170 vs. ExPASy TrEMBL
Match: A0A5A7SHF1 (SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold253G00670 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.7e-04
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 0

Query: 17 MRNVNDRGDEMRNVNGIEDGESRVVEDEEVGGRRGSLPNGLSMLFNAHLGYHADNP 73
          M NVN R DE  N +G E+      EDEEVGGRR SLP+GL+   +AHLG HA +P
Sbjct: 1  MGNVNGREDEDGNPSGAEE------EDEEVGGRRSSLPDGLAAPPDAHLGCHAGDP 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53678.13.5e-32100.00hypothetical protein Csa_014856 [Cucumis sativus][more]
XP_004134805.14.8e-0558.93SNF1-related protein kinase regulatory subunit beta-2 [Cucumis sativus] >KGN4903... [more]
XP_008440979.11.8e-0457.14PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis m... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KVT01.7e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G101780 PE=4 SV=1[more]
A0A0A0KH572.3e-0558.93AMPKBI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G511020 PE=3... [more]
A0A5D3CKN68.8e-0557.14SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo var. ... [more]
A0A1S3B3528.8e-0557.14SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo OX=36... [more]
A0A5A7SHF19.7e-0455.36SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo var. ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G009170.1CsaV3_4G009170.1mRNA