CsaV3_4G008990.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G008990.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Retrotransposable element Tf2
Location	chr4: 6511246 .. 6511674 (+)
Sequence length	429
RNA-Seq Expression	CsaV3_4G008990.1
Synteny	CsaV3_4G008990.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCGTGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTAGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAGAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCGTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCCTGTTAGAATGA

mRNA sequence

ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCGTGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTAGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAGAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCGTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCCTGTTAGAATGA

Coding sequence (CDS)

ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCGTGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTAGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAGAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCGTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCCTGTTAGAATGA

Protein sequence

MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDSLLE*

Homology

[Close]

BLAST of CsaV3_4G008990.1 vs. NCBI nr
Match: KGN53659.1 (hypothetical protein Csa_014527 [Cucumis sativus])

HSP 1 Score: 285.4 bits (729), Expect = 2.7e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
           MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60

Query: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
           EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI
Sbjct: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120

Query: 121 DFDNDPYYNFDISDPYFDSLLE 143
           DFDNDPYYNFDISDPYFDSLLE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142

[Close]

BLAST of CsaV3_4G008990.1 vs. NCBI nr
Match: KAA0051819.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 3.6e-46
Identity = 101/142 (71.13%), Postives = 115/142 (80.99%), Query Frame = 0


Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTH 60
           MYRFSLYFQV WIF W HQLS+RAKFKI  KIL VKWWD      ++E++I KWFKTN  
Sbjct: 57  MYRFSLYFQVSWIFLWIHQLSSRAKFKIFGKILPVKWWDKYNYSHLDEDQITKWFKTNAR 116

Query: 61  LSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFA 120
           L +EEEDQFLL KNSIMT IAGAKSEADLQ +M+TV+H I+DD+KE+D EDTRISS+S  
Sbjct: 117 LLREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSV 176

Query: 121 NDIDFDNDPYYNFDISDPYFDS 140
           N+ID DND YYNFDI DPY DS
Sbjct: 177 NNIDSDNDLYYNFDIFDPYLDS 198

[Close]

BLAST of CsaV3_4G008990.1 vs. NCBI nr
Match: KAA0050626.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 3.1e-45
Identity = 103/141 (73.05%), Postives = 113/141 (80.14%), Query Frame = 0


Query: 2   YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHL 61
           YRFSLYFQV WIF W HQLS+RAKFKIL KILRVKWWD      +NEE+IAKWFKTN  L
Sbjct: 58  YRFSLYFQVPWIFCWCHQLSSRAKFKILGKILRVKWWDKYDYSCLNEEEIAKWFKTNARL 117

Query: 62  SQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFAN 121
           S+EEEDQFLL KNSIMT IAGAKSEADLQ VMETV++   DD+K++D ED    S+S  N
Sbjct: 118 SREEEDQFLLAKNSIMTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVN 177

Query: 122 DIDFDNDPYYNFDISDPYFDS 140
           DIDF NDPYYNFDISD Y DS
Sbjct: 178 DIDFVNDPYYNFDISDLYLDS 198

[Close]

BLAST of CsaV3_4G008990.1 vs. NCBI nr
Match: KAA0026133.1 (hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593.1 hypothetical protein E5676_scaffold263G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.7e-35
Identity = 84/126 (66.67%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 17  SHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSI 76
           SHQLS+RAKFKIL KIL V+WWD      +NEE+IAKWFK N HLS+EEEDQFLL KNS+
Sbjct: 65  SHQLSSRAKFKILGKILCVEWWDEYDYSHLNEEQIAKWFKVNAHLSREEEDQFLLVKNSV 124

Query: 77  MTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDIS 136
           MT I GAKSEADLQ VM+TV++   DD K++  ED    SNS  NDIDF+N+PYYNFDI 
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184

Query: 137 DPYFDS 140
           DPY +S
Sbjct: 185 DPYLNS 190

[Close]

BLAST of CsaV3_4G008990.1 vs. NCBI nr
Match: TYK23161.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 8.4e-27
Identity = 68/88 (77.27%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 2   YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHL 61
           YRFSLYFQV WIF WSHQLS+RAKFKIL KILRV WWD      +N+E+IAKW KTN HL
Sbjct: 311 YRFSLYFQVPWIFCWSHQLSSRAKFKILGKILRVIWWDKYDYSRLNKEQIAKWVKTNAHL 370

Query: 62  SQEEEDQFLLRKNSIMTFIAGAKSEADL 87
           S+EEEDQFLL KNSIMT IAGAKSE DL
Sbjct: 371 SREEEDQFLLTKNSIMTSIAGAKSEEDL 398

[Close]

BLAST of CsaV3_4G008990.1 vs. ExPASy TrEMBL
Match: A0A0A0KXT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.3e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
           MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60

Query: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
           EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI
Sbjct: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120

Query: 121 DFDNDPYYNFDISDPYFDSLLE 143
           DFDNDPYYNFDISDPYFDSLLE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142

[Close]

BLAST of CsaV3_4G008990.1 vs. ExPASy TrEMBL
Match: A0A5A7UEA0 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00850 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.8e-46
Identity = 101/142 (71.13%), Postives = 115/142 (80.99%), Query Frame = 0


Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTH 60
           MYRFSLYFQV WIF W HQLS+RAKFKI  KIL VKWWD      ++E++I KWFKTN  
Sbjct: 57  MYRFSLYFQVSWIFLWIHQLSSRAKFKIFGKILPVKWWDKYNYSHLDEDQITKWFKTNAR 116

Query: 61  LSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFA 120
           L +EEEDQFLL KNSIMT IAGAKSEADLQ +M+TV+H I+DD+KE+D EDTRISS+S  
Sbjct: 117 LLREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSV 176

Query: 121 NDIDFDNDPYYNFDISDPYFDS 140
           N+ID DND YYNFDI DPY DS
Sbjct: 177 NNIDSDNDLYYNFDIFDPYLDS 198

[Close]

BLAST of CsaV3_4G008990.1 vs. ExPASy TrEMBL
Match: A0A5A7U8X4 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001080 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.5e-45
Identity = 103/141 (73.05%), Postives = 113/141 (80.14%), Query Frame = 0


Query: 2   YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHL 61
           YRFSLYFQV WIF W HQLS+RAKFKIL KILRVKWWD      +NEE+IAKWFKTN  L
Sbjct: 58  YRFSLYFQVPWIFCWCHQLSSRAKFKILGKILRVKWWDKYDYSCLNEEEIAKWFKTNARL 117

Query: 62  SQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFAN 121
           S+EEEDQFLL KNSIMT IAGAKSEADLQ VMETV++   DD+K++D ED    S+S  N
Sbjct: 118 SREEEDQFLLAKNSIMTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVN 177

Query: 122 DIDFDNDPYYNFDISDPYFDS 140
           DIDF NDPYYNFDISD Y DS
Sbjct: 178 DIDFVNDPYYNFDISDLYLDS 198

[Close]

BLAST of CsaV3_4G008990.1 vs. ExPASy TrEMBL
Match: A0A5D3CI63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00370 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 8.2e-36
Identity = 84/126 (66.67%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 17  SHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSI 76
           SHQLS+RAKFKIL KIL V+WWD      +NEE+IAKWFK N HLS+EEEDQFLL KNS+
Sbjct: 65  SHQLSSRAKFKILGKILCVEWWDEYDYSHLNEEQIAKWFKVNAHLSREEEDQFLLVKNSV 124

Query: 77  MTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDIS 136
           MT I GAKSEADLQ VM+TV++   DD K++  ED    SNS  NDIDF+N+PYYNFDI 
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184

Query: 137 DPYFDS 140
           DPY +S
Sbjct: 185 DPYLNS 190

[Close]

BLAST of CsaV3_4G008990.1 vs. ExPASy TrEMBL
Match: A0A5D3DHL2 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001860 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.1e-27
Identity = 68/88 (77.27%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 2   YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHL 61
           YRFSLYFQV WIF WSHQLS+RAKFKIL KILRV WWD      +N+E+IAKW KTN HL
Sbjct: 311 YRFSLYFQVPWIFCWSHQLSSRAKFKILGKILRVIWWDKYDYSRLNKEQIAKWVKTNAHL 370

Query: 62  SQEEEDQFLLRKNSIMTFIAGAKSEADL 87
           S+EEEDQFLL KNSIMT IAGAKSE DL
Sbjct: 371 SREEEDQFLLTKNSIMTSIAGAKSEEDL 398

The following BLAST results are available for this feature:

BLAST of CsaV3_4G008990.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53659.1	2.7e-73	100.00	hypothetical protein Csa_014527 [Cucumis sativus]	[more]
KAA0051819.1	3.6e-46	71.13	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransp...	[more]
KAA0050626.1	3.1e-45	73.05	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransp...	[more]
KAA0026133.1	1.7e-35	66.67	hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593...	[more]
TYK23161.1	8.4e-27	77.27	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_4G008990.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G008990.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXT5	1.3e-73	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1	[more]
A0A5A7UEA0	1.8e-46	71.13	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U8X4	1.5e-45	73.05	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3CI63	8.2e-36	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DHL2	4.1e-27	77.27	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of CsaV3_4G008990.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_4G008990	CsaV3_4G008990	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G008990.1.exon1	CsaV3_4G008990.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G008990.1.cds1	CsaV3_4G008990.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G008990.1	CsaV3_4G008990.1-protein	polypeptide