Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCGTGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTAGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAGAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCGTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCCTGTTAGAATGA
mRNA sequence
ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCGTGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTAGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAGAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCGTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCCTGTTAGAATGA
Coding sequence (CDS)
ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCGTGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTAGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAGAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCGTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCCTGTTAGAATGA
Protein sequence
MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDSLLE*
Homology
BLAST of CsaV3_4G008990 vs. NCBI nr
Match:
KGN53659.1 (hypothetical protein Csa_014527 [Cucumis sativus])
HSP 1 Score: 285.4 bits (729), Expect = 2.7e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
Query: 61 EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI
Sbjct: 61 EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
Query: 121 DFDNDPYYNFDISDPYFDSLLE 143
DFDNDPYYNFDISDPYFDSLLE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142
BLAST of CsaV3_4G008990 vs. NCBI nr
Match:
KAA0051819.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 195.3 bits (495), Expect = 3.6e-46
Identity = 101/142 (71.13%), Postives = 115/142 (80.99%), Query Frame = 0
Query: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTH 60
MYRFSLYFQV WIF W HQLS+RAKFKI KIL VKWWD ++E++I KWFKTN
Sbjct: 57 MYRFSLYFQVSWIFLWIHQLSSRAKFKIFGKILPVKWWDKYNYSHLDEDQITKWFKTNAR 116
Query: 61 LSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFA 120
L +EEEDQFLL KNSIMT IAGAKSEADLQ +M+TV+H I+DD+KE+D EDTRISS+S
Sbjct: 117 LLREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSV 176
Query: 121 NDIDFDNDPYYNFDISDPYFDS 140
N+ID DND YYNFDI DPY DS
Sbjct: 177 NNIDSDNDLYYNFDIFDPYLDS 198
BLAST of CsaV3_4G008990 vs. NCBI nr
Match:
KAA0050626.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 192.2 bits (487), Expect = 3.1e-45
Identity = 103/141 (73.05%), Postives = 113/141 (80.14%), Query Frame = 0
Query: 2 YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHL 61
YRFSLYFQV WIF W HQLS+RAKFKIL KILRVKWWD +NEE+IAKWFKTN L
Sbjct: 58 YRFSLYFQVPWIFCWCHQLSSRAKFKILGKILRVKWWDKYDYSCLNEEEIAKWFKTNARL 117
Query: 62 SQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFAN 121
S+EEEDQFLL KNSIMT IAGAKSEADLQ VMETV++ DD+K++D ED S+S N
Sbjct: 118 SREEEDQFLLAKNSIMTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVN 177
Query: 122 DIDFDNDPYYNFDISDPYFDS 140
DIDF NDPYYNFDISD Y DS
Sbjct: 178 DIDFVNDPYYNFDISDLYLDS 198
BLAST of CsaV3_4G008990 vs. NCBI nr
Match:
KAA0026133.1 (hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593.1 hypothetical protein E5676_scaffold263G00370 [Cucumis melo var. makuwa])
HSP 1 Score: 159.8 bits (403), Expect = 1.7e-35
Identity = 84/126 (66.67%), Postives = 98/126 (77.78%), Query Frame = 0
Query: 17 SHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSI 76
SHQLS+RAKFKIL KIL V+WWD +NEE+IAKWFK N HLS+EEEDQFLL KNS+
Sbjct: 65 SHQLSSRAKFKILGKILCVEWWDEYDYSHLNEEQIAKWFKVNAHLSREEEDQFLLVKNSV 124
Query: 77 MTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDIS 136
MT I GAKSEADLQ VM+TV++ DD K++ ED SNS NDIDF+N+PYYNFDI
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184
Query: 137 DPYFDS 140
DPY +S
Sbjct: 185 DPYLNS 190
BLAST of CsaV3_4G008990 vs. NCBI nr
Match:
TYK23161.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 131.0 bits (328), Expect = 8.4e-27
Identity = 68/88 (77.27%), Postives = 73/88 (82.95%), Query Frame = 0
Query: 2 YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHL 61
YRFSLYFQV WIF WSHQLS+RAKFKIL KILRV WWD +N+E+IAKW KTN HL
Sbjct: 311 YRFSLYFQVPWIFCWSHQLSSRAKFKILGKILRVIWWDKYDYSRLNKEQIAKWVKTNAHL 370
Query: 62 SQEEEDQFLLRKNSIMTFIAGAKSEADL 87
S+EEEDQFLL KNSIMT IAGAKSE DL
Sbjct: 371 SREEEDQFLLTKNSIMTSIAGAKSEEDL 398
BLAST of CsaV3_4G008990 vs. ExPASy TrEMBL
Match:
A0A0A0KXT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1)
HSP 1 Score: 285.4 bits (729), Expect = 1.3e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
Query: 61 EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI
Sbjct: 61 EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
Query: 121 DFDNDPYYNFDISDPYFDSLLE 143
DFDNDPYYNFDISDPYFDSLLE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142
BLAST of CsaV3_4G008990 vs. ExPASy TrEMBL
Match:
A0A5A7UEA0 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00850 PE=4 SV=1)
HSP 1 Score: 195.3 bits (495), Expect = 1.8e-46
Identity = 101/142 (71.13%), Postives = 115/142 (80.99%), Query Frame = 0
Query: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTH 60
MYRFSLYFQV WIF W HQLS+RAKFKI KIL VKWWD ++E++I KWFKTN
Sbjct: 57 MYRFSLYFQVSWIFLWIHQLSSRAKFKIFGKILPVKWWDKYNYSHLDEDQITKWFKTNAR 116
Query: 61 LSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFA 120
L +EEEDQFLL KNSIMT IAGAKSEADLQ +M+TV+H I+DD+KE+D EDTRISS+S
Sbjct: 117 LLREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSV 176
Query: 121 NDIDFDNDPYYNFDISDPYFDS 140
N+ID DND YYNFDI DPY DS
Sbjct: 177 NNIDSDNDLYYNFDIFDPYLDS 198
BLAST of CsaV3_4G008990 vs. ExPASy TrEMBL
Match:
A0A5A7U8X4 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001080 PE=4 SV=1)
HSP 1 Score: 192.2 bits (487), Expect = 1.5e-45
Identity = 103/141 (73.05%), Postives = 113/141 (80.14%), Query Frame = 0
Query: 2 YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHL 61
YRFSLYFQV WIF W HQLS+RAKFKIL KILRVKWWD +NEE+IAKWFKTN L
Sbjct: 58 YRFSLYFQVPWIFCWCHQLSSRAKFKILGKILRVKWWDKYDYSCLNEEEIAKWFKTNARL 117
Query: 62 SQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFAN 121
S+EEEDQFLL KNSIMT IAGAKSEADLQ VMETV++ DD+K++D ED S+S N
Sbjct: 118 SREEEDQFLLAKNSIMTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVN 177
Query: 122 DIDFDNDPYYNFDISDPYFDS 140
DIDF NDPYYNFDISD Y DS
Sbjct: 178 DIDFVNDPYYNFDISDLYLDS 198
BLAST of CsaV3_4G008990 vs. ExPASy TrEMBL
Match:
A0A5D3CI63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00370 PE=4 SV=1)
HSP 1 Score: 159.8 bits (403), Expect = 8.2e-36
Identity = 84/126 (66.67%), Postives = 98/126 (77.78%), Query Frame = 0
Query: 17 SHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSI 76
SHQLS+RAKFKIL KIL V+WWD +NEE+IAKWFK N HLS+EEEDQFLL KNS+
Sbjct: 65 SHQLSSRAKFKILGKILCVEWWDEYDYSHLNEEQIAKWFKVNAHLSREEEDQFLLVKNSV 124
Query: 77 MTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDIS 136
MT I GAKSEADLQ VM+TV++ DD K++ ED SNS NDIDF+N+PYYNFDI
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184
Query: 137 DPYFDS 140
DPY +S
Sbjct: 185 DPYLNS 190
BLAST of CsaV3_4G008990 vs. ExPASy TrEMBL
Match:
A0A5D3DHL2 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001860 PE=4 SV=1)
HSP 1 Score: 131.0 bits (328), Expect = 4.1e-27
Identity = 68/88 (77.27%), Postives = 73/88 (82.95%), Query Frame = 0
Query: 2 YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTHL 61
YRFSLYFQV WIF WSHQLS+RAKFKIL KILRV WWD +N+E+IAKW KTN HL
Sbjct: 311 YRFSLYFQVPWIFCWSHQLSSRAKFKILGKILRVIWWDKYDYSRLNKEQIAKWVKTNAHL 370
Query: 62 SQEEEDQFLLRKNSIMTFIAGAKSEADL 87
S+EEEDQFLL KNSIMT IAGAKSE DL
Sbjct: 371 SREEEDQFLLTKNSIMTSIAGAKSEEDL 398
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN53659.1 | 2.7e-73 | 100.00 | hypothetical protein Csa_014527 [Cucumis sativus] | [more] |
KAA0051819.1 | 3.6e-46 | 71.13 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransp... | [more] |
KAA0050626.1 | 3.1e-45 | 73.05 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransp... | [more] |
KAA0026133.1 | 1.7e-35 | 66.67 | hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593... | [more] |
TYK23161.1 | 8.4e-27 | 77.27 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KXT5 | 1.3e-73 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1 | [more] |
A0A5A7UEA0 | 1.8e-46 | 71.13 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
A0A5A7U8X4 | 1.5e-45 | 73.05 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
A0A5D3CI63 | 8.2e-36 | 66.67 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3DHL2 | 4.1e-27 | 77.27 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
Match Name | E-value | Identity | Description | |