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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGCCAGTCTCTTCTCACATCTCCTCCCTCTCTTTCATTCCTCTCTTCTCCATTCTCAATCGTCCTCCCTTGTGCCGCATCTTGTCAGATCTCAGTCTCCTCTTTGTCATCCAAAATCTCATCTTCAGTCTTCTTTTGACCCCTATGACCCCTATTCGTCGTCTGAAATCTCATATGTAGTCTTCTTCTGACTCTTCGTCATCTCCACCCTCTTTCGCACCGATTGTTAGATCTCAGTTCGTCGTCTGTCAGATCTCAGTATCCTCCCTCTCCTCGTCATTCATCTCCCTCTTTAGTCTTCTCAGCCATCTGTCTCTTCAGTTTCTGACGACCATTTGACAGTCATCTTCTTCGTCCGACTCTTCAGCATATGA mRNA sequence ATGCCAGTCTCTTCTCACATCTCCTCCCTCTCTTTCATTCCTCTCTTCTCCATTCTCAATCGTCCTCCCTTGTGCCGCATCTTGTCAGATCTCAGTCTCCTCTTTTCTTCTTCTGACTCTTCGTCATCTCCACCCTCTTTCGCACCGATTGTTAGATCTCAGTTCGTCGTCTGTCAGATCTCATCTTCTCAGCCATCTGTCTCTTCAGTTTCTGACGACCATTTGACAGTCATCTTCTTCGTCCGACTCTTCAGCATATGA Coding sequence (CDS) ATGCCAGTCTCTTCTCACATCTCCTCCCTCTCTTTCATTCCTCTCTTCTCCATTCTCAATCGTCCTCCCTTGTGCCGCATCTTGTCAGATCTCAGTCTCCTCTTTTCTTCTTCTGACTCTTCGTCATCTCCACCCTCTTTCGCACCGATTGTTAGATCTCAGTTCGTCGTCTGTCAGATCTCATCTTCTCAGCCATCTGTCTCTTCAGTTTCTGACGACCATTTGACAGTCATCTTCTTCGTCCGACTCTTCAGCATATGA Protein sequence MPVSSHISSLSFIPLFSILNRPPLCRILSDLSLLFSSSDSSSSPPSFAPIVRSQFVVCQISSSQPSVSSVSDDHLTVIFFVRLFSI*
Homology
BLAST of CsaV3_4G008950.1 vs. NCBI nr
Match: KGN53655.1 (hypothetical protein Csa_015129 [Cucumis sativus]) HSP 1 Score: 161.4 bits (407), Expect = 3.5e-36 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
Query: 1 MPVSSHISSLSFIPLFSILNRPPLCRILSDLSLLFSSSDSSSSPPSFAPIVRSQFVVCQI 60
MPVSSHISSLSFIPLFSILNRPPLCRILSDLSLLFSSSDSSSSPPSFAPIVRSQFVVCQI
Sbjct: 1 MPVSSHISSLSFIPLFSILNRPPLCRILSDLSLLFSSSDSSSSPPSFAPIVRSQFVVCQI 60
Query: 61 SSSQPSVSSVSDDHLTVIFFVRLFSI 87
SSSQPSVSSVSDDHLTVIFFVRLFSI
Sbjct: 61 SSSQPSVSSVSDDHLTVIFFVRLFSI 86
BLAST of CsaV3_4G008950.1 vs. ExPASy TrEMBL
Match: A0A0A0KVM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097620 PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 1.7e-36 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
Query: 1 MPVSSHISSLSFIPLFSILNRPPLCRILSDLSLLFSSSDSSSSPPSFAPIVRSQFVVCQI 60
MPVSSHISSLSFIPLFSILNRPPLCRILSDLSLLFSSSDSSSSPPSFAPIVRSQFVVCQI
Sbjct: 1 MPVSSHISSLSFIPLFSILNRPPLCRILSDLSLLFSSSDSSSSPPSFAPIVRSQFVVCQI 60
Query: 61 SSSQPSVSSVSDDHLTVIFFVRLFSI 87
SSSQPSVSSVSDDHLTVIFFVRLFSI
Sbjct: 61 SSSQPSVSSVSDDHLTVIFFVRLFSI 86
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN53655.1 | 3.5e-36 | 100.00 | hypothetical protein Csa_015129 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KVM0 | 1.7e-36 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097620 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_4G008950.1.exon3 | CsaV3_4G008950.1.exon3 | exon |
| CsaV3_4G008950.1.exon2 | CsaV3_4G008950.1.exon2 | exon |
| CsaV3_4G008950.1.exon1 | CsaV3_4G008950.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_4G008950.1.cds3 | CsaV3_4G008950.1.cds3 | CDS |
| CsaV3_4G008950.1.cds2 | CsaV3_4G008950.1.cds2 | CDS |
| CsaV3_4G008950.1.cds1 | CsaV3_4G008950.1.cds1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_4G008950.1 | CsaV3_4G008950.1-protein | polypeptide |
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