CsaV3_3G041640.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G041640.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 33988129 .. 33988412 (-)
Sequence length219
RNA-Seq ExpressionCsaV3_3G041640.1
SyntenyCsaV3_3G041640.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGGAGAAGATCTGGAGTGGGGAAAGGGAAGGGGAGAGCAATGGCAAGAAACCAAACGCCTCCTCCGAGAGAAACCTAACGATGCAGAAGTGTGAAGGGAACGAATAATTGAGATTGCAGAAAGAAAAAGGGCTTGGAATCGGAGAATTTGAAGCTCCTTTTTGCGATCCGAGTTGCAGAATCAGGAAATCGATTATCAAGAAGAACAGATGGAAGATGATGATGATGATGCCGATCGATCTGATTCTGATTGGAGAAAGAGTACGAATAATGTATGA

mRNA sequence

ATGAAGGAGGAGAAGATCTGGAGTGGGGAAAGGGAAGGGGAGAGCAATGGCAAGAAACCAAACGCCTCCTCCGAGAGAAACCTAACGATGCAGAACTCCTTTTTGCGATCCGAGTTGCAGAATCAGGAAATCGATTATCAAGAAGAACAGATGGAAGATGATGATGATGATGCCGATCGATCTGATTCTGATTGGAGAAAGAGTACGAATAATGTATGA

Coding sequence (CDS)

ATGAAGGAGGAGAAGATCTGGAGTGGGGAAAGGGAAGGGGAGAGCAATGGCAAGAAACCAAACGCCTCCTCCGAGAGAAACCTAACGATGCAGAACTCCTTTTTGCGATCCGAGTTGCAGAATCAGGAAATCGATTATCAAGAAGAACAGATGGAAGATGATGATGATGATGCCGATCGATCTGATTCTGATTGGAGAAAGAGTACGAATAATGTATGA

Protein sequence

MKEEKIWSGEREGESNGKKPNASSERNLTMQNSFLRSELQNQEIDYQEEQMEDDDDDADRSDSDWRKSTNNV*
Homology
[Close]
BLAST of CsaV3_3G041640.1 vs. NCBI nr
Match: KGN59586.1 (hypothetical protein Csa_002399 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 1.0e-28
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MKEEKIWSGEREGESNGKKPNASSERNLTMQNSFLRSELQNQEIDYQEEQMEDDDDDADR 60
          MKEEKIWSGEREGESNGKKPNASSERNLTMQNSFLRSELQNQEIDYQEEQMEDDDDDADR
Sbjct: 1  MKEEKIWSGEREGESNGKKPNASSERNLTMQNSFLRSELQNQEIDYQEEQMEDDDDDADR 60

Query: 61 SDSDWRKSTNNV 73
          SDSDWRKSTNNV
Sbjct: 61 SDSDWRKSTNNV 72

[Close]
BLAST of CsaV3_3G041640.1 vs. ExPASy TrEMBL
Match: A0A0A0LHS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827280 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.0e-29
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MKEEKIWSGEREGESNGKKPNASSERNLTMQNSFLRSELQNQEIDYQEEQMEDDDDDADR 60
          MKEEKIWSGEREGESNGKKPNASSERNLTMQNSFLRSELQNQEIDYQEEQMEDDDDDADR
Sbjct: 1  MKEEKIWSGEREGESNGKKPNASSERNLTMQNSFLRSELQNQEIDYQEEQMEDDDDDADR 60

Query: 61 SDSDWRKSTNNV 73
          SDSDWRKSTNNV
Sbjct: 61 SDSDWRKSTNNV 72

The following BLAST results are available for this feature:
BLAST of CsaV3_3G041640.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59586.11.0e-28100.00hypothetical protein Csa_002399 [Cucumis sativus][more]
BLAST of CsaV3_3G041640.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G041640.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHS55.0e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827280 PE=4 SV=1[more]
BLAST of CsaV3_3G041640.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 32..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..59

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G041640CsaV3_3G041640gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G041640.1.exon2CsaV3_3G041640.1.exon2exon
CsaV3_3G041640.1.exon1CsaV3_3G041640.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G041640.1.cds2CsaV3_3G041640.1.cds2CDS
CsaV3_3G041640.1.cds1CsaV3_3G041640.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G041640.1CsaV3_3G041640.1-proteinpolypeptide