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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAGGAGGAGAAGATCTGGAGTGGGGAAAGGGAAGGGGAGAGCAATGGCAAGAAACCAAACGCCTCCTCCGAGAGAAACCTAACGATGCAGAAGTGTGAAGGGAACGAATAATTGAGATTGCAGAAAGAAAAAGGGCTTGGAATCGGAGAATTTGAAGCTCCTTTTTGCGATCCGAGTTGCAGAATCAGGAAATCGATTATCAAGAAGAACAGATGGAAGATGATGATGATGATGCCGATCGATCTGATTCTGATTGGAGAAAGAGTACGAATAATGTATGA mRNA sequence ATGAAGGAGGAGAAGATCTGGAGTGGGGAAAGGGAAGGGGAGAGCAATGGCAAGAAACCAAACGCCTCCTCCGAGAGAAACCTAACGATGCAGAACTCCTTTTTGCGATCCGAGTTGCAGAATCAGGAAATCGATTATCAAGAAGAACAGATGGAAGATGATGATGATGATGCCGATCGATCTGATTCTGATTGGAGAAAGAGTACGAATAATGTATGA Coding sequence (CDS) ATGAAGGAGGAGAAGATCTGGAGTGGGGAAAGGGAAGGGGAGAGCAATGGCAAGAAACCAAACGCCTCCTCCGAGAGAAACCTAACGATGCAGAACTCCTTTTTGCGATCCGAGTTGCAGAATCAGGAAATCGATTATCAAGAAGAACAGATGGAAGATGATGATGATGATGCCGATCGATCTGATTCTGATTGGAGAAAGAGTACGAATAATGTATGA Protein sequence MKEEKIWSGEREGESNGKKPNASSERNLTMQNSFLRSELQNQEIDYQEEQMEDDDDDADRSDSDWRKSTNNV*
Homology
BLAST of CsaV3_3G041640 vs. NCBI nr
Match: KGN59586.1 (hypothetical protein Csa_002399 [Cucumis sativus]) HSP 1 Score: 136.3 bits (342), Expect = 1.0e-28 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0
Query: 1 MKEEKIWSGEREGESNGKKPNASSERNLTMQNSFLRSELQNQEIDYQEEQMEDDDDDADR 60
MKEEKIWSGEREGESNGKKPNASSERNLTMQNSFLRSELQNQEIDYQEEQMEDDDDDADR
Sbjct: 1 MKEEKIWSGEREGESNGKKPNASSERNLTMQNSFLRSELQNQEIDYQEEQMEDDDDDADR 60
Query: 61 SDSDWRKSTNNV 73
SDSDWRKSTNNV
Sbjct: 61 SDSDWRKSTNNV 72
BLAST of CsaV3_3G041640 vs. ExPASy TrEMBL
Match: A0A0A0LHS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827280 PE=4 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 5.0e-29 Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0
Query: 1 MKEEKIWSGEREGESNGKKPNASSERNLTMQNSFLRSELQNQEIDYQEEQMEDDDDDADR 60
MKEEKIWSGEREGESNGKKPNASSERNLTMQNSFLRSELQNQEIDYQEEQMEDDDDDADR
Sbjct: 1 MKEEKIWSGEREGESNGKKPNASSERNLTMQNSFLRSELQNQEIDYQEEQMEDDDDDADR 60
Query: 61 SDSDWRKSTNNV 73
SDSDWRKSTNNV
Sbjct: 61 SDSDWRKSTNNV 72
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN59586.1 | 1.0e-28 | 100.00 | hypothetical protein Csa_002399 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LHS5 | 5.0e-29 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827280 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 32..52 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..72 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..19 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 20..41 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 45..59 |
Relationships
The following mRNA feature(s) are a part of this gene:
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