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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. GAAACAAATAATAAATTCAAAACTTTTAATTTTATTTGACCGTAATAAAAAAAAAATTAAAAAATATTAAGGGGCTTTCAATTTTCATTTAAGTCTCCACGTCAAGTTTGGCTATGGTTCTTTCTCAGACAAATTAAATGTGCATCGAATTTCAAATCTTCTCTGCTTTTTTTTTCACTTTGCCTTTTTCTCCTTTTTATCTCTCTCTCTCTCTCTCTTTCATGGGTATTTGAACCTCCACCATCCTCTTCATAACCTTAATCTTTCTCCACAATTTGCATGGCCGCAGCAACTATTTCAACATCACCAATTTCTCAATCCCTTAAACAATCTCACACTCAACATCATTATCATCATCTCTTTCACCTAATTCCATCTCTAACTCTTCTCTTCCTCTTTCTCACAATCACCATCCTCGGTAGCCCTTCCATGGCTGCCTTGGAGCCCACGAACTCTGAGTCGGAATCCACAGGCACAAGGCGGAGAGATGATCTTCGTTTTGAATCTGCAGTTTTACAGGTTCCGAGCGGACTGAAACCTACTTCGAACAATTTGTTGCAGAAACAGAGGTTGGCGTCCGAATCCTGCAGCAGACTGCGGAGAGACTATCGTCGTTTTGAATCTGACGAATCGAAACCCATTTCCAACATTCCGATGCAGAAACTGGTGTCGGAGTCAGAATTAAACGGCAGGCGGTGGAGAGGCTATCGTCGGTTTGAATCTGCTGCGAGCGGAACGAAACCTAGTTCGAACAATCCGCCGCGGAAAAAGAGATTGAAGTTGGAATCTAGCGGTAGGCGGTGGAGAGACTATCGTCGATTTCAATCCGCAGTTCTCAAAGTTCCAACCGGCAAAAGGAATCACGCTTCGAACAATCCGCCGCTGAAACAGAAGCCGAACTCGGAATCCGGCGACAGGCGGAGGAGAAATGACCATCTATTTGAATCTGCGGCGCATGAAGTTCCGAGTGGGCCGAATCCGATTTCGAACTAACAAAAACAGAATTTTGTCAATGGGCGGTTTTGAGCGAAGACGTGGAAGTGTTTTTCTTCTGTAAATGAATGGCGAGCTGCAATGATTTTTTCATCTTCGCATGGATACTAACTGATCGACAAGAACAACCGAATCCGCCATTGAAGCGTCTCCTTTACACTGCTCTTCATCTCAATTTTTAATCTTCTTTTCTTCTTTCTTCCCTGTTTCTGTGTGGTTTGTTATTTATATATATAAACATATAGAGAGAGTTCATATTCGCAATATATAAATATATATTTAAACTGTCTTAGATA mRNA sequence ATGGCCGCAGCAACTATTTCAACATCACCAATTTCTCAATCCCTTAAACAATCTCACACTCAACATCATTATCATCATCTCTTTCACCTAATTCCATCTCTAACTCTTCTCTTCCTCTTTCTCACAATCACCATCCTCGGTAGCCCTTCCATGGCTGCCTTGGAGCCCACGAACTCTGAGTCGGAATCCACAGGCACAAGGCGGAGAGATGATCTTCGTTTTGAATCTGCAGTTTTACAGGTTCCGAGCGGACTGAAACCTACTTCGAACAATTTGTTGCAGAAACAGAGGTTGGCGTCCGAATCCTGCAGCAGACTGCGGAGAGACTATCGTCGTTTTGAATCTGACGAATCGAAACCCATTTCCAACATTCCGATGCAGAAACTGGTGTCGGAGTCAGAATTAAACGGCAGGCGGTGGAGAGGCTATCGTCGGTTTGAATCTGCTGCGAGCGGAACGAAACCTAGTTCGAACAATCCGCCGCGGAAAAAGAGATTGAAGTTGGAATCTAGCGGTAGGCGGAGGAGAAATGACCATCTATTTGAATCTGCGGCGCATGAAGTTCCGAGTGGGCCGAATCCGATTTCGAACTAA Coding sequence (CDS) ATGGCCGCAGCAACTATTTCAACATCACCAATTTCTCAATCCCTTAAACAATCTCACACTCAACATCATTATCATCATCTCTTTCACCTAATTCCATCTCTAACTCTTCTCTTCCTCTTTCTCACAATCACCATCCTCGGTAGCCCTTCCATGGCTGCCTTGGAGCCCACGAACTCTGAGTCGGAATCCACAGGCACAAGGCGGAGAGATGATCTTCGTTTTGAATCTGCAGTTTTACAGGTTCCGAGCGGACTGAAACCTACTTCGAACAATTTGTTGCAGAAACAGAGGTTGGCGTCCGAATCCTGCAGCAGACTGCGGAGAGACTATCGTCGTTTTGAATCTGACGAATCGAAACCCATTTCCAACATTCCGATGCAGAAACTGGTGTCGGAGTCAGAATTAAACGGCAGGCGGTGGAGAGGCTATCGTCGGTTTGAATCTGCTGCGAGCGGAACGAAACCTAGTTCGAACAATCCGCCGCGGAAAAAGAGATTGAAGTTGGAATCTAGCGGTAGGCGGAGGAGAAATGACCATCTATTTGAATCTGCGGCGCATGAAGTTCCGAGTGGGCCGAATCCGATTTCGAACTAA Protein sequence MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSESESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKPISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRRRNDHLFESAAHEVPSGPNPISN*
Homology
BLAST of CsaV3_3G029850.1 vs. NCBI nr
Match: KAE8650847.1 (hypothetical protein Csa_002136 [Cucumis sativus]) HSP 1 Score: 378.3 bits (970), Expect = 4.2e-101 Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
Query: 1 MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE 60
MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE
Sbjct: 1 MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE 60
Query: 61 SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP 120
SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP
Sbjct: 61 SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP 120
Query: 121 ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRRRNDHL 180
ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRRRNDHL
Sbjct: 121 ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRRRNDHL 180
Query: 181 FESAAHEVPSGPNPISN 198
FESAAHEVPSGPNPISN
Sbjct: 181 FESAAHEVPSGPNPISN 197
BLAST of CsaV3_3G029850.1 vs. NCBI nr
Match: KAA0068203.1 (hypothetical protein E6C27_scaffold238G001890 [Cucumis melo var. makuwa] >TYK21123.1 hypothetical protein E5676_scaffold392G001030 [Cucumis melo var. makuwa]) HSP 1 Score: 283.1 bits (723), Expect = 1.8e-72 Identity = 166/239 (69.46%), Postives = 171/239 (71.55%), Query Frame = 0
Query: 1 MAAATISTSPISQSLKQSHTQHH--YHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTN 60
MAA TISTSPIS SLKQSH+ HH +HHLFHL P LTLLFLFLTI ILGSPSMAALEP
Sbjct: 1 MAATTISTSPISLSLKQSHSHHHRPHHHLFHLTPYLTLLFLFLTIAILGSPSMAALEPLK 60
Query: 61 SESESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDES 120
S SESTGTRRRDD RFESAVLQVPSG KPTSNNLLQ+QRL SES +R DYRRFESD
Sbjct: 61 SVSESTGTRRRDDRRFESAVLQVPSGPKPTSNNLLQEQRLESESSNRRWTDYRRFESDGP 120
Query: 121 KPISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGR----- 180
KPISN MQKLVSESE NGRRWRGYRRFES ASGTK SS NPPRKKRL+ ESSGR
Sbjct: 121 KPISNSSMQKLVSESESNGRRWRGYRRFESVASGTKSSSKNPPRKKRLESESSGRRWRDY 180
Query: 181 -----------------------------------RRRNDHLFESAAHEVPSGPNPISN 198
RRRND LFESAAHEVPSGPNPISN
Sbjct: 181 RRFESAALKVPNNKKNHASNNPPLKQKPNSESGGWRRRNDRLFESAAHEVPSGPNPISN 239
BLAST of CsaV3_3G029850.1 vs. NCBI nr
Match: XP_022931103.1 (uncharacterized protein LOC111437389 [Cucurbita moschata]) HSP 1 Score: 98.6 bits (244), Expect = 6.4e-17 Identity = 85/212 (40.09%), Postives = 100/212 (47.17%), Query Frame = 0
Query: 1 MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNS- 60
MA A+ S+SP S S + +LIPSLTLLF+FLT +LGSPSMAA E
Sbjct: 1 MATASSSSSPNSSSSR------------NLIPSLTLLFVFLTAVVLGSPSMAASESQTRL 60
Query: 61 --------------ESESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSR 120
ESES G R RDD ESAV +V SG NN +KQR SES R
Sbjct: 61 IPHSLNNPPRKHRLESESGGRRPRDDRPLESAVFEVTSGTNHVLNNPPRKQRSDSESGGR 120
Query: 121 LRRDYRRFESDESKPISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKR 180
RR+ R SN+PPR++
Sbjct: 121 GRRNDR--------------------------------------------DSNSPPRQQS 155
Query: 181 LKLESSGRRRRNDHLFESAAHEVPSGPNPISN 198
L + SG +RR+D FESAAHEVPSGPNPISN
Sbjct: 181 LD-KKSGGQRRDDSRFESAAHEVPSGPNPISN 155
BLAST of CsaV3_3G029850.1 vs. ExPASy TrEMBL
Match: A0A0A0LE33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G626150 PE=4 SV=1) HSP 1 Score: 358.6 bits (919), Expect = 1.7e-95 Identity = 197/237 (83.12%), Postives = 197/237 (83.12%), Query Frame = 0
Query: 1 MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE 60
MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE
Sbjct: 1 MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE 60
Query: 61 SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP 120
SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP
Sbjct: 61 SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP 120
Query: 121 ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSG-------- 180
ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSG
Sbjct: 121 ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRWRDYRR 180
Query: 181 --------------------------------RRRRNDHLFESAAHEVPSGPNPISN 198
RRRRNDHLFESAAHEVPSGPNPISN
Sbjct: 181 FESAVLKVPTGKRNHASNNPPLKQKPNSESGDRRRRNDHLFESAAHEVPSGPNPISN 237
BLAST of CsaV3_3G029850.1 vs. ExPASy TrEMBL
Match: A0A5D3DC24 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G001030 PE=4 SV=1) HSP 1 Score: 283.1 bits (723), Expect = 8.9e-73 Identity = 166/239 (69.46%), Postives = 171/239 (71.55%), Query Frame = 0
Query: 1 MAAATISTSPISQSLKQSHTQHH--YHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTN 60
MAA TISTSPIS SLKQSH+ HH +HHLFHL P LTLLFLFLTI ILGSPSMAALEP
Sbjct: 1 MAATTISTSPISLSLKQSHSHHHRPHHHLFHLTPYLTLLFLFLTIAILGSPSMAALEPLK 60
Query: 61 SESESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDES 120
S SESTGTRRRDD RFESAVLQVPSG KPTSNNLLQ+QRL SES +R DYRRFESD
Sbjct: 61 SVSESTGTRRRDDRRFESAVLQVPSGPKPTSNNLLQEQRLESESSNRRWTDYRRFESDGP 120
Query: 121 KPISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGR----- 180
KPISN MQKLVSESE NGRRWRGYRRFES ASGTK SS NPPRKKRL+ ESSGR
Sbjct: 121 KPISNSSMQKLVSESESNGRRWRGYRRFESVASGTKSSSKNPPRKKRLESESSGRRWRDY 180
Query: 181 -----------------------------------RRRNDHLFESAAHEVPSGPNPISN 198
RRRND LFESAAHEVPSGPNPISN
Sbjct: 181 RRFESAALKVPNNKKNHASNNPPLKQKPNSESGGWRRRNDRLFESAAHEVPSGPNPISN 239
BLAST of CsaV3_3G029850.1 vs. ExPASy TrEMBL
Match: A0A6J1EXF7 (uncharacterized protein LOC111437389 OS=Cucurbita moschata OX=3662 GN=LOC111437389 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 3.1e-17 Identity = 85/212 (40.09%), Postives = 100/212 (47.17%), Query Frame = 0
Query: 1 MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNS- 60
MA A+ S+SP S S + +LIPSLTLLF+FLT +LGSPSMAA E
Sbjct: 1 MATASSSSSPNSSSSR------------NLIPSLTLLFVFLTAVVLGSPSMAASESQTRL 60
Query: 61 --------------ESESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSR 120
ESES G R RDD ESAV +V SG NN +KQR SES R
Sbjct: 61 IPHSLNNPPRKHRLESESGGRRPRDDRPLESAVFEVTSGTNHVLNNPPRKQRSDSESGGR 120
Query: 121 LRRDYRRFESDESKPISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKR 180
RR+ R SN+PPR++
Sbjct: 121 GRRNDR--------------------------------------------DSNSPPRQQS 155
Query: 181 LKLESSGRRRRNDHLFESAAHEVPSGPNPISN 198
L + SG +RR+D FESAAHEVPSGPNPISN
Sbjct: 181 LD-KKSGGQRRDDSRFESAAHEVPSGPNPISN 155
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8650847.1 | 4.2e-101 | 100.00 | hypothetical protein Csa_002136 [Cucumis sativus] | [more] |
| KAA0068203.1 | 1.8e-72 | 69.46 | hypothetical protein E6C27_scaffold238G001890 [Cucumis melo var. makuwa] >TYK211... | [more] |
| XP_022931103.1 | 6.4e-17 | 40.09 | uncharacterized protein LOC111437389 [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LE33 | 1.7e-95 | 83.12 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G626150 PE=4 SV=1 | [more] |
| A0A5D3DC24 | 8.9e-73 | 69.46 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A6J1EXF7 | 3.1e-17 | 40.09 | uncharacterized protein LOC111437389 OS=Cucurbita moschata OX=3662 GN=LOC1114373... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 145..197 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 162..183 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_3G029850.1.exon1 | CsaV3_3G029850.1.exon1 | exon |
| CsaV3_3G029850.1.exon2 | CsaV3_3G029850.1.exon2 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_3G029850.1.cds1 | CsaV3_3G029850.1.cds1 | CDS |
| CsaV3_3G029850.1.cds2 | CsaV3_3G029850.1.cds2 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_3G029850.1 | CsaV3_3G029850.1-protein | polypeptide |
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