CsaV3_3G029850 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G029850
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 25594981 .. 25596269 (+)
RNA-Seq Expression	CsaV3_3G029850
Synteny	CsaV3_3G029850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAACAAATAATAAATTCAAAACTTTTAATTTTATTTGACCGTAATAAAAAAAAAATTAAAAAATATTAAGGGGCTTTCAATTTTCATTTAAGTCTCCACGTCAAGTTTGGCTATGGTTCTTTCTCAGACAAATTAAATGTGCATCGAATTTCAAATCTTCTCTGCTTTTTTTTTCACTTTGCCTTTTTCTCCTTTTTATCTCTCTCTCTCTCTCTCTTTCATGGGTATTTGAACCTCCACCATCCTCTTCATAACCTTAATCTTTCTCCACAATTTGCATGGCCGCAGCAACTATTTCAACATCACCAATTTCTCAATCCCTTAAACAATCTCACACTCAACATCATTATCATCATCTCTTTCACCTAATTCCATCTCTAACTCTTCTCTTCCTCTTTCTCACAATCACCATCCTCGGTAGCCCTTCCATGGCTGCCTTGGAGCCCACGAACTCTGAGTCGGAATCCACAGGCACAAGGCGGAGAGATGATCTTCGTTTTGAATCTGCAGTTTTACAGGTTCCGAGCGGACTGAAACCTACTTCGAACAATTTGTTGCAGAAACAGAGGTTGGCGTCCGAATCCTGCAGCAGACTGCGGAGAGACTATCGTCGTTTTGAATCTGACGAATCGAAACCCATTTCCAACATTCCGATGCAGAAACTGGTGTCGGAGTCAGAATTAAACGGCAGGCGGTGGAGAGGCTATCGTCGGTTTGAATCTGCTGCGAGCGGAACGAAACCTAGTTCGAACAATCCGCCGCGGAAAAAGAGATTGAAGTTGGAATCTAGCGGTAGGCGGTGGAGAGACTATCGTCGATTTCAATCCGCAGTTCTCAAAGTTCCAACCGGCAAAAGGAATCACGCTTCGAACAATCCGCCGCTGAAACAGAAGCCGAACTCGGAATCCGGCGACAGGCGGAGGAGAAATGACCATCTATTTGAATCTGCGGCGCATGAAGTTCCGAGTGGGCCGAATCCGATTTCGAACTAACAAAAACAGAATTTTGTCAATGGGCGGTTTTGAGCGAAGACGTGGAAGTGTTTTTCTTCTGTAAATGAATGGCGAGCTGCAATGATTTTTTCATCTTCGCATGGATACTAACTGATCGACAAGAACAACCGAATCCGCCATTGAAGCGTCTCCTTTACACTGCTCTTCATCTCAATTTTTAATCTTCTTTTCTTCTTTCTTCCCTGTTTCTGTGTGGTTTGTTATTTATATATATAAACATATAGAGAGAGTTCATATTCGCAATATATAAATATATATTTAAACTGTCTTAGATA

mRNA sequence

ATGGCCGCAGCAACTATTTCAACATCACCAATTTCTCAATCCCTTAAACAATCTCACACTCAACATCATTATCATCATCTCTTTCACCTAATTCCATCTCTAACTCTTCTCTTCCTCTTTCTCACAATCACCATCCTCGGTAGCCCTTCCATGGCTGCCTTGGAGCCCACGAACTCTGAGTCGGAATCCACAGGCACAAGGCGGAGAGATGATCTTCGTTTTGAATCTGCAGTTTTACAGGTTCCGAGCGGACTGAAACCTACTTCGAACAATTTGTTGCAGAAACAGAGGTTGGCGTCCGAATCCTGCAGCAGACTGCGGAGAGACTATCGTCGTTTTGAATCTGACGAATCGAAACCCATTTCCAACATTCCGATGCAGAAACTGGTGTCGGAGTCAGAATTAAACGGCAGGCGGTGGAGAGGCTATCGTCGGTTTGAATCTGCTGCGAGCGGAACGAAACCTAGTTCGAACAATCCGCCGCGGAAAAAGAGATTGAAGTTGGAATCTAGCGGTAGGCGGAGGAGAAATGACCATCTATTTGAATCTGCGGCGCATGAAGTTCCGAGTGGGCCGAATCCGATTTCGAACTAA

Coding sequence (CDS)

ATGGCCGCAGCAACTATTTCAACATCACCAATTTCTCAATCCCTTAAACAATCTCACACTCAACATCATTATCATCATCTCTTTCACCTAATTCCATCTCTAACTCTTCTCTTCCTCTTTCTCACAATCACCATCCTCGGTAGCCCTTCCATGGCTGCCTTGGAGCCCACGAACTCTGAGTCGGAATCCACAGGCACAAGGCGGAGAGATGATCTTCGTTTTGAATCTGCAGTTTTACAGGTTCCGAGCGGACTGAAACCTACTTCGAACAATTTGTTGCAGAAACAGAGGTTGGCGTCCGAATCCTGCAGCAGACTGCGGAGAGACTATCGTCGTTTTGAATCTGACGAATCGAAACCCATTTCCAACATTCCGATGCAGAAACTGGTGTCGGAGTCAGAATTAAACGGCAGGCGGTGGAGAGGCTATCGTCGGTTTGAATCTGCTGCGAGCGGAACGAAACCTAGTTCGAACAATCCGCCGCGGAAAAAGAGATTGAAGTTGGAATCTAGCGGTAGGCGGAGGAGAAATGACCATCTATTTGAATCTGCGGCGCATGAAGTTCCGAGTGGGCCGAATCCGATTTCGAACTAA

Protein sequence

MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSESESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKPISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRRRNDHLFESAAHEVPSGPNPISN*

Homology

[Close]

BLAST of CsaV3_3G029850 vs. NCBI nr
Match: KAE8650847.1 (hypothetical protein Csa_002136 [Cucumis sativus])

HSP 1 Score: 378.3 bits (970), Expect = 4.2e-101
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE 60
           MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE
Sbjct: 1   MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE 60

Query: 61  SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP 120
           SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP
Sbjct: 61  SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP 120

Query: 121 ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRRRNDHL 180
           ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRRRNDHL
Sbjct: 121 ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRRRNDHL 180

Query: 181 FESAAHEVPSGPNPISN 198
           FESAAHEVPSGPNPISN
Sbjct: 181 FESAAHEVPSGPNPISN 197

[Close]

BLAST of CsaV3_3G029850 vs. NCBI nr
Match: KAA0068203.1 (hypothetical protein E6C27_scaffold238G001890 [Cucumis melo var. makuwa] >TYK21123.1 hypothetical protein E5676_scaffold392G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 283.1 bits (723), Expect = 1.8e-72
Identity = 166/239 (69.46%), Postives = 171/239 (71.55%), Query Frame = 0


Query: 1   MAAATISTSPISQSLKQSHTQHH--YHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTN 60
           MAA TISTSPIS SLKQSH+ HH  +HHLFHL P LTLLFLFLTI ILGSPSMAALEP  
Sbjct: 1   MAATTISTSPISLSLKQSHSHHHRPHHHLFHLTPYLTLLFLFLTIAILGSPSMAALEPLK 60

Query: 61  SESESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDES 120
           S SESTGTRRRDD RFESAVLQVPSG KPTSNNLLQ+QRL SES +R   DYRRFESD  
Sbjct: 61  SVSESTGTRRRDDRRFESAVLQVPSGPKPTSNNLLQEQRLESESSNRRWTDYRRFESDGP 120

Query: 121 KPISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGR----- 180
           KPISN  MQKLVSESE NGRRWRGYRRFES ASGTK SS NPPRKKRL+ ESSGR     
Sbjct: 121 KPISNSSMQKLVSESESNGRRWRGYRRFESVASGTKSSSKNPPRKKRLESESSGRRWRDY 180

Query: 181 -----------------------------------RRRNDHLFESAAHEVPSGPNPISN 198
                                              RRRND LFESAAHEVPSGPNPISN
Sbjct: 181 RRFESAALKVPNNKKNHASNNPPLKQKPNSESGGWRRRNDRLFESAAHEVPSGPNPISN 239

[Close]

BLAST of CsaV3_3G029850 vs. NCBI nr
Match: XP_022931103.1 (uncharacterized protein LOC111437389 [Cucurbita moschata])

HSP 1 Score: 98.6 bits (244), Expect = 6.4e-17
Identity = 85/212 (40.09%), Postives = 100/212 (47.17%), Query Frame = 0


Query: 1   MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNS- 60
           MA A+ S+SP S S +            +LIPSLTLLF+FLT  +LGSPSMAA E     
Sbjct: 1   MATASSSSSPNSSSSR------------NLIPSLTLLFVFLTAVVLGSPSMAASESQTRL 60

Query: 61  --------------ESESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSR 120
                         ESES G R RDD   ESAV +V SG     NN  +KQR  SES  R
Sbjct: 61  IPHSLNNPPRKHRLESESGGRRPRDDRPLESAVFEVTSGTNHVLNNPPRKQRSDSESGGR 120

Query: 121 LRRDYRRFESDESKPISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKR 180
            RR+ R                                             SN+PPR++ 
Sbjct: 121 GRRNDR--------------------------------------------DSNSPPRQQS 155

Query: 181 LKLESSGRRRRNDHLFESAAHEVPSGPNPISN 198
           L  + SG +RR+D  FESAAHEVPSGPNPISN
Sbjct: 181 LD-KKSGGQRRDDSRFESAAHEVPSGPNPISN 155

[Close]

BLAST of CsaV3_3G029850 vs. ExPASy TrEMBL
Match: A0A0A0LE33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G626150 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.7e-95
Identity = 197/237 (83.12%), Postives = 197/237 (83.12%), Query Frame = 0


Query: 1   MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE 60
           MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE
Sbjct: 1   MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE 60

Query: 61  SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP 120
           SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP
Sbjct: 61  SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP 120

Query: 121 ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSG-------- 180
           ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSG        
Sbjct: 121 ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRWRDYRR 180

Query: 181 --------------------------------RRRRNDHLFESAAHEVPSGPNPISN 198
                                           RRRRNDHLFESAAHEVPSGPNPISN
Sbjct: 181 FESAVLKVPTGKRNHASNNPPLKQKPNSESGDRRRRNDHLFESAAHEVPSGPNPISN 237

[Close]

BLAST of CsaV3_3G029850 vs. ExPASy TrEMBL
Match: A0A5D3DC24 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G001030 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 8.9e-73
Identity = 166/239 (69.46%), Postives = 171/239 (71.55%), Query Frame = 0


Query: 1   MAAATISTSPISQSLKQSHTQHH--YHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTN 60
           MAA TISTSPIS SLKQSH+ HH  +HHLFHL P LTLLFLFLTI ILGSPSMAALEP  
Sbjct: 1   MAATTISTSPISLSLKQSHSHHHRPHHHLFHLTPYLTLLFLFLTIAILGSPSMAALEPLK 60

Query: 61  SESESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDES 120
           S SESTGTRRRDD RFESAVLQVPSG KPTSNNLLQ+QRL SES +R   DYRRFESD  
Sbjct: 61  SVSESTGTRRRDDRRFESAVLQVPSGPKPTSNNLLQEQRLESESSNRRWTDYRRFESDGP 120

Query: 121 KPISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGR----- 180
           KPISN  MQKLVSESE NGRRWRGYRRFES ASGTK SS NPPRKKRL+ ESSGR     
Sbjct: 121 KPISNSSMQKLVSESESNGRRWRGYRRFESVASGTKSSSKNPPRKKRLESESSGRRWRDY 180

Query: 181 -----------------------------------RRRNDHLFESAAHEVPSGPNPISN 198
                                              RRRND LFESAAHEVPSGPNPISN
Sbjct: 181 RRFESAALKVPNNKKNHASNNPPLKQKPNSESGGWRRRNDRLFESAAHEVPSGPNPISN 239

[Close]

BLAST of CsaV3_3G029850 vs. ExPASy TrEMBL
Match: A0A6J1EXF7 (uncharacterized protein LOC111437389 OS=Cucurbita moschata OX=3662 GN=LOC111437389 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-17
Identity = 85/212 (40.09%), Postives = 100/212 (47.17%), Query Frame = 0


Query: 1   MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNS- 60
           MA A+ S+SP S S +            +LIPSLTLLF+FLT  +LGSPSMAA E     
Sbjct: 1   MATASSSSSPNSSSSR------------NLIPSLTLLFVFLTAVVLGSPSMAASESQTRL 60

Query: 61  --------------ESESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSR 120
                         ESES G R RDD   ESAV +V SG     NN  +KQR  SES  R
Sbjct: 61  IPHSLNNPPRKHRLESESGGRRPRDDRPLESAVFEVTSGTNHVLNNPPRKQRSDSESGGR 120

Query: 121 LRRDYRRFESDESKPISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKR 180
            RR+ R                                             SN+PPR++ 
Sbjct: 121 GRRNDR--------------------------------------------DSNSPPRQQS 155

Query: 181 LKLESSGRRRRNDHLFESAAHEVPSGPNPISN 198
           L  + SG +RR+D  FESAAHEVPSGPNPISN
Sbjct: 181 LD-KKSGGQRRDDSRFESAAHEVPSGPNPISN 155

The following BLAST results are available for this feature:

BLAST of CsaV3_3G029850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650847.1	4.2e-101	100.00	hypothetical protein Csa_002136 [Cucumis sativus]	[more]
KAA0068203.1	1.8e-72	69.46	hypothetical protein E6C27_scaffold238G001890 [Cucumis melo var. makuwa] >TYK211...	[more]
XP_022931103.1	6.4e-17	40.09	uncharacterized protein LOC111437389 [Cucurbita moschata]	[more]

BLAST of CsaV3_3G029850 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G029850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE33	1.7e-95	83.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G626150 PE=4 SV=1	[more]
A0A5D3DC24	8.9e-73	69.46	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1EXF7	3.1e-17	40.09	uncharacterized protein LOC111437389 OS=Cucurbita moschata OX=3662 GN=LOC1114373...	[more]

BLAST of CsaV3_3G029850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G029850.1	CsaV3_3G029850.1	mRNA