CsaV3_2G008200.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G008200.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRibosomal protein L23
Locationchr2: 4471763 .. 4472103 (+)
Sequence length261
RNA-Seq ExpressionCsaV3_2G008200.1
SyntenyCsaV3_2G008200.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAACGGCTCATCTCGCCGTGACCTTATCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCTGGGGCGGAGAACCCATCGCTGTCTCGGCTGTGCTATCAGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGTGTTTACCGTGGGCACGATAACTGGTATTATTATATTTACCTCATTATATTATATAATTAGTTCATGGTGGATATGGAAGAAACTCATAATCTCAAATTTACAGGTTGAAGATTGCAATAGAAAATGTCTCATGA

mRNA sequence

ATGACAAACGGCTCATCTCGCCGTGACCTTATCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCTGGGGCGGAGAACCCATCGCTGTCTCGGCTGTGCTATCAGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGTGTTTACCGTGGGCACGATAACTGGTTGAAGATTGCAATAGAAAATGTCTCATGA

Coding sequence (CDS)

ATGACAAACGGCTCATCTCGCCGTGACCTTATCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCTGGGGCGGAGAACCCATCGCTGTCTCGGCTGTGCTATCAGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGTGTTTACCGTGGGCACGATAACTGGTTGAAGATTGCAATAGAAAATGTCTCATGA

Protein sequence

MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWLKIAIENVS*
Homology
[Close]
BLAST of CsaV3_2G008200.1 vs. NCBI nr
Match: KAE8651661.1 (hypothetical protein Csa_021339 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 1.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
          MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1  MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 87
          YPLRTWLPSVYRGHDNWLKIAIENVS
Sbjct: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 86

[Close]
BLAST of CsaV3_2G008200.1 vs. NCBI nr
Match: TXG59590.1 (hypothetical protein EZV62_014163 [Acer yangbiense])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1   MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]
BLAST of CsaV3_2G008200.1 vs. NCBI nr
Match: TXG46680.1 (hypothetical protein EZV62_027835 [Acer yangbiense] >TXG46683.1 hypothetical protein EZV62_027838 [Acer yangbiense])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1   MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]
BLAST of CsaV3_2G008200.1 vs. NCBI nr
Match: PWA76046.1 (hypothetical protein CTI12_AA236480 [Artemisia annua])

HSP 1 Score: 164.5 bits (415), Expect = 4.2e-37
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1   MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]
BLAST of CsaV3_2G008200.1 vs. NCBI nr
Match: KAB1210637.1 (hypothetical protein CJ030_MR6G010321 [Morella rubra] >KAB1226196.1 hypothetical protein CJ030_MR1G029169 [Morella rubra])

HSP 1 Score: 164.5 bits (415), Expect = 4.2e-37
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1   MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]
BLAST of CsaV3_2G008200.1 vs. ExPASy TrEMBL
Match: A0A0A0LGR1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055570 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.2e-43
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
          MTNGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1  MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 87
          YPLRTWLPSVYRGHDNWLKIAIENVS
Sbjct: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 86

[Close]
BLAST of CsaV3_2G008200.1 vs. ExPASy TrEMBL
Match: A0A5C7GQ25 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027835 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1   MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]
BLAST of CsaV3_2G008200.1 vs. ExPASy TrEMBL
Match: A0A5C7HRI9 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014163 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1   MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]
BLAST of CsaV3_2G008200.1 vs. ExPASy TrEMBL
Match: A0A2N9HQ72 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40355 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-37
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1   MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]
BLAST of CsaV3_2G008200.1 vs. ExPASy TrEMBL
Match: A0A6B9QQT2 (Ribosomal protein L23 OS=Peganum harmala OX=43879 GN=rpl23 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-37
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1  MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
          M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLRTWLPSVYRGHDNW 78
          YPLRTWLPSVYRGHDNW
Sbjct: 61 YPLRTWLPSVYRGHDNW 77

The following BLAST results are available for this feature:
BLAST of CsaV3_2G008200.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651661.11.3e-43100.00hypothetical protein Csa_021339 [Cucumis sativus][more]
TXG59590.11.4e-3797.40hypothetical protein EZV62_014163 [Acer yangbiense][more]
TXG46680.11.4e-3797.40hypothetical protein EZV62_027835 [Acer yangbiense] >TXG46683.1 hypothetical pro... [more]
PWA76046.14.2e-3796.10hypothetical protein CTI12_AA236480 [Artemisia annua][more]
KAB1210637.14.2e-3796.10hypothetical protein CJ030_MR6G010321 [Morella rubra] >KAB1226196.1 hypothetical... [more]
BLAST of CsaV3_2G008200.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G008200.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGR13.2e-4397.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055570 PE=4 SV=1[more]
A0A5C7GQ257.0e-3897.40Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027835 PE=4 SV=1[more]
A0A5C7HRI97.0e-3897.40Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014163 PE=4 SV=1[more]
A0A2N9HQ722.0e-3796.10Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40355 PE=4 SV=1[more]
A0A6B9QQT22.0e-3796.10Ribosomal protein L23 OS=Peganum harmala OX=43879 GN=rpl23 PE=4 SV=1[more]
BLAST of CsaV3_2G008200.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G008200CsaV3_2G008200gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G008200.1.exon1CsaV3_2G008200.1.exon1exon
CsaV3_2G008200.1.exon2CsaV3_2G008200.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G008200.1.cds1CsaV3_2G008200.1.cds1CDS
CsaV3_2G008200.1.cds2CsaV3_2G008200.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G008200.1CsaV3_2G008200.1-proteinpolypeptide