CsaV3_2G008200 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G008200
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ribosomal protein L23
Location	chr2: 4471763 .. 4472103 (+)
RNA-Seq Expression	CsaV3_2G008200
Synteny	CsaV3_2G008200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAACGGCTCATCTCGCCGTGACCTTATCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCTGGGGCGGAGAACCCATCGCTGTCTCGGCTGTGCTATCAGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGTGTTTACCGTGGGCACGATAACTGGTATTATTATATTTACCTCATTATATTATATAATTAGTTCATGGTGGATATGGAAGAAACTCATAATCTCAAATTTACAGGTTGAAGATTGCAATAGAAAATGTCTCATGA

mRNA sequence

ATGACAAACGGCTCATCTCGCCGTGACCTTATCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCTGGGGCGGAGAACCCATCGCTGTCTCGGCTGTGCTATCAGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGTGTTTACCGTGGGCACGATAACTGGTTGAAGATTGCAATAGAAAATGTCTCATGA

Coding sequence (CDS)

ATGACAAACGGCTCATCTCGCCGTGACCTTATCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCTGGGGCGGAGAACCCATCGCTGTCTCGGCTGTGCTATCAGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGTGTTTACCGTGGGCACGATAACTGGTTGAAGATTGCAATAGAAAATGTCTCATGA

Protein sequence

MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWLKIAIENVS*

Homology

[Close]

BLAST of CsaV3_2G008200 vs. NCBI nr
Match: KAE8651661.1 (hypothetical protein Csa_021339 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 1.3e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
          MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1  MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 87
          YPLRTWLPSVYRGHDNWLKIAIENVS
Sbjct: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 86

[Close]

BLAST of CsaV3_2G008200 vs. NCBI nr
Match: TXG59590.1 (hypothetical protein EZV62_014163 [Acer yangbiense])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of CsaV3_2G008200 vs. NCBI nr
Match: TXG46680.1 (hypothetical protein EZV62_027835 [Acer yangbiense] >TXG46683.1 hypothetical protein EZV62_027838 [Acer yangbiense])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of CsaV3_2G008200 vs. NCBI nr
Match: PWA76046.1 (hypothetical protein CTI12_AA236480 [Artemisia annua])

HSP 1 Score: 164.5 bits (415), Expect = 4.2e-37
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of CsaV3_2G008200 vs. NCBI nr
Match: KAB1210637.1 (hypothetical protein CJ030_MR6G010321 [Morella rubra] >KAB1226196.1 hypothetical protein CJ030_MR1G029169 [Morella rubra])

HSP 1 Score: 164.5 bits (415), Expect = 4.2e-37
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of CsaV3_2G008200 vs. ExPASy TrEMBL
Match: A0A0A0LGR1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055570 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.2e-43
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
          MTNGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1  MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 87
          YPLRTWLPSVYRGHDNWLKIAIENVS
Sbjct: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 86

[Close]

BLAST of CsaV3_2G008200 vs. ExPASy TrEMBL
Match: A0A5C7GQ25 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027835 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of CsaV3_2G008200 vs. ExPASy TrEMBL
Match: A0A5C7HRI9 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014163 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of CsaV3_2G008200 vs. ExPASy TrEMBL
Match: A0A2N9HQ72 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40355 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-37
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of CsaV3_2G008200 vs. ExPASy TrEMBL
Match: A0A6B9QQT2 (Ribosomal protein L23 OS=Peganum harmala OX=43879 GN=rpl23 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-37
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
          M NGSSRRDL+LNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLRTWLPSVYRGHDNW 78
          YPLRTWLPSVYRGHDNW
Sbjct: 61 YPLRTWLPSVYRGHDNW 77

The following BLAST results are available for this feature:

BLAST of CsaV3_2G008200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651661.1	1.3e-43	100.00	hypothetical protein Csa_021339 [Cucumis sativus]	[more]
TXG59590.1	1.4e-37	97.40	hypothetical protein EZV62_014163 [Acer yangbiense]	[more]
TXG46680.1	1.4e-37	97.40	hypothetical protein EZV62_027835 [Acer yangbiense] >TXG46683.1 hypothetical pro...	[more]
PWA76046.1	4.2e-37	96.10	hypothetical protein CTI12_AA236480 [Artemisia annua]	[more]
KAB1210637.1	4.2e-37	96.10	hypothetical protein CJ030_MR6G010321 [Morella rubra] >KAB1226196.1 hypothetical...	[more]

BLAST of CsaV3_2G008200 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G008200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGR1	3.2e-43	97.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055570 PE=4 SV=1	[more]
A0A5C7GQ25	7.0e-38	97.40	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027835 PE=4 SV=1	[more]
A0A5C7HRI9	7.0e-38	97.40	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014163 PE=4 SV=1	[more]
A0A2N9HQ72	2.0e-37	96.10	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40355 PE=4 SV=1	[more]
A0A6B9QQT2	2.0e-37	96.10	Ribosomal protein L23 OS=Peganum harmala OX=43879 GN=rpl23 PE=4 SV=1	[more]

BLAST of CsaV3_2G008200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G008200.1	CsaV3_2G008200.1	mRNA