CsGy6G033877.1 (mRNA) Cucumber (Gy14) v2.1
|
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGCTTCCAGAACCCACTACATCACCGCCGCCGCCTACTCTCCCAGGGCTTCTGCCCGCCCCTTTCCCAAGCGAGGTCAGGTCAAATTGGGGATTATGGTGGGTCTTGCCCACACCGTTGCTTCAATTTTCTCACCCACCACTCGTCGGACTTAGATGGCCGCTTCCAGAACCCACTACATCACCGCCGCCGCCTACTCTCCCAGGGCTTCTGCCCGCCCCTTTCCCAAGCGAGGTCAGGTCAAATTGGGGATTATGGTGGGTCTTGCCCACACCGTTGCTTCAATTTTCTCACCCACCACTCGTCGGACTTAG ATGGCCGCTTCCAGAACCCACTACATCACCGCCGCCGCCTACTCTCCCAGGGCTTCTGCCCGCCCCTTTCCCAAGCGAGGTCAGGTCAAATTGGGGATTATGGTGGGTCTTGCCCACACCGTTGCTTCAATTTTCTCACCCACCACTCGTCGGACTTAG MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT* Homology
BLAST of CsGy6G033877.1 vs. NCBI nr
Match: KGN49191.1 (hypothetical protein Csa_004352 [Cucumis sativus]) HSP 1 Score: 103 bits (258), Expect = 7.29e-28 Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0
BLAST of CsGy6G033877.1 vs. NCBI nr
Match: KAA0052718.1 (hypothetical protein E6C27_scaffold120G003310 [Cucumis melo var. makuwa]) HSP 1 Score: 91.7 bits (226), Expect = 1.19e-22 Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 0
BLAST of CsGy6G033877.1 vs. NCBI nr
Match: XP_022977341.1 (uncharacterized protein LOC111477692 [Cucurbita maxima]) HSP 1 Score: 76.6 bits (187), Expect = 5.37e-16 Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 0
BLAST of CsGy6G033877.1 vs. NCBI nr
Match: KAG2689810.1 (hypothetical protein I3760_09G156900 [Carya illinoinensis] >KAG6696674.1 hypothetical protein I3842_09G159900 [Carya illinoinensis]) HSP 1 Score: 61.6 bits (148), Expect = 4.42e-11 Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 0
BLAST of CsGy6G033877.1 vs. NCBI nr
Match: KAG6642713.1 (hypothetical protein CIPAW_09G159600 [Carya illinoinensis] >KAG6696673.1 hypothetical protein I3842_09G159800 [Carya illinoinensis]) HSP 1 Score: 59.3 bits (142), Expect = 3.64e-10 Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 0
BLAST of CsGy6G033877.1 vs. ExPASy TrEMBL
Match: A0A0A0KN78 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516990 PE=4 SV=1) HSP 1 Score: 103 bits (258), Expect = 3.53e-28 Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0
BLAST of CsGy6G033877.1 vs. ExPASy TrEMBL
Match: A0A5A7UBX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003310 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 5.78e-23 Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 0
BLAST of CsGy6G033877.1 vs. ExPASy TrEMBL
Match: A0A6J1IJM3 (uncharacterized protein LOC111477692 OS=Cucurbita maxima OX=3661 GN=LOC111477692 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.60e-16 Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 0
BLAST of CsGy6G033877.1 vs. ExPASy TrEMBL
Match: A0A5J5VQ30 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A05G172400v1 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 2.07e-10 Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0
BLAST of CsGy6G033877.1 vs. ExPASy TrEMBL
Match: A0A5D2UXY7 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D05G178200v1 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 2.07e-10 Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|