CsGy6G017085.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G017085.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	3-hydroxyacyl-CoA dehydrogenase
Location	Gy14Chr6: 17620030 .. 17620527 (+)
Sequence length	423
RNA-Seq Expression	CsGy6G017085.1
Synteny	CsGy6G017085.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATGGGCCCCTTCAGGTTTATAGATTTTTGTGCTTCAGCTTCATGCTTTTTCATACTTGACCTTCATCTAACTTTGATATTTTTCTTCAGATTGATTGATCTTGTTGGTTTTGGGGTGGCTATAGCAACCGGTGGTCAGTTTGTTCAGAATTTTCCTGATAGAACCTTCAAATCTATGATAATTCCTCTTATGCAAGAGGATAAGAGAGCAGGTAGAGTTTCACCCCTTAAACTCAGACACTTACGTCTATCATTTTGCTGGCTTTACACTTCCGGAAGATATTTTATCAATGATTCTGTGAGGTATTTTTATTTATCCGGGAGTAATTACTGCTCAGCACACACTCAACTCACATATGAACACCATACTTTCAGACATTCCCGAACTCATTGTCAGAGGTTTAGAAAAAAATCCATCCTATATAAGCATAAAACCCTAATGATTGGCAGTCTATGGAATCACATTCTCAAATATTTTATGTTTCTTCTTTAG

mRNA sequence

ATGCCAATGGGCCCCTTCAGATTGATTGATCTTGTTGGTTTTGGGGTGGCTATAGCAACCGGTGGTCAGTTTGTTCAGAATTTTCCTGATAGAACCTTCAAATCTATGATAATTCCTCTTATGCAAGAGGATAAGAGAGCAGGTAGAGTTTCACCCCTTAAACTCAGACACTTACGTCTATCATTTTGCTGGCTTTACACTTCCGGAAGATATTTTATCAATGATTCTGTGAGGTATTTTTATTTATCCGGGAGTAATTACTGCTCAGCACACACTCAACTCACATATGAACACCATACTTTCAGACATTCCCGAACTCATTGTCAGAGGTTTAGAAAAAAATCCATCCTATATAAGCATAAAACCCTAATGATTGGCAGTCTATGGAATCACATTCTCAAATATTTTATGTTTCTTCTTTAG

Coding sequence (CDS)

ATGCCAATGGGCCCCTTCAGATTGATTGATCTTGTTGGTTTTGGGGTGGCTATAGCAACCGGTGGTCAGTTTGTTCAGAATTTTCCTGATAGAACCTTCAAATCTATGATAATTCCTCTTATGCAAGAGGATAAGAGAGCAGGTAGAGTTTCACCCCTTAAACTCAGACACTTACGTCTATCATTTTGCTGGCTTTACACTTCCGGAAGATATTTTATCAATGATTCTGTGAGGTATTTTTATTTATCCGGGAGTAATTACTGCTCAGCACACACTCAACTCACATATGAACACCATACTTTCAGACATTCCCGAACTCATTGTCAGAGGTTTAGAAAAAAATCCATCCTATATAAGCATAAAACCCTAATGATTGGCAGTCTATGGAATCACATTCTCAAATATTTTATGTTTCTTCTTTAG

Protein sequence

MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVSPLKLRHLRLSFCWLYTSGRYFINDSVRYFYLSGSNYCSAHTQLTYEHHTFRHSRTHCQRFRKKSILYKHKTLMIGSLWNHILKYFMFLL*

Homology

[Close]

BLAST of CsGy6G017085.1 vs. ExPASy Swiss-Prot
Match: O49809 (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus OX=3708 PE=2 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 9.6e-18
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVS 52
           MPMGPFRL DLVGFGVAIAT  QF++NFP+RT+KSMIIPLMQEDKRAG  +
Sbjct: 531 MPMGPFRLCDLVGFGVAIATATQFIENFPERTYKSMIIPLMQEDKRAGEAT 581

[Close]

BLAST of CsGy6G017085.1 vs. ExPASy Swiss-Prot
Match: Q9ZPI5 (Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 OS=Arabidopsis thaliana OX=3702 GN=MFP2 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.1e-17
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVS 52
           MPMGPFRL DLVGFGVAIAT  QF++NF +RT+KSMIIPLMQEDKRAG  +
Sbjct: 531 MPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEAT 581

[Close]

BLAST of CsGy6G017085.1 vs. ExPASy Swiss-Prot
Match: Q39659 (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus OX=3659 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.3e-16
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAG 49
           MPMGPFRL DLVGFGVA AT  QFVQ FP+RT+KSM+IPLMQEDK AG
Sbjct: 531 MPMGPFRLCDLVGFGVAAATASQFVQAFPERTYKSMLIPLMQEDKNAG 578

[Close]

BLAST of CsGy6G017085.1 vs. ExPASy Swiss-Prot
Match: Q8W1L6 (Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica OX=39947 GN=MFP PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 3.5e-04
Identity = 21/49 (42.86%), Postives = 30/49 (61.22%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGR 50
           MPMGPF+L DL G+GVA+A    +   F  R   S ++ LM ++ R G+
Sbjct: 528 MPMGPFQLQDLAGYGVALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGK 576

[Close]

BLAST of CsGy6G017085.1 vs. ExPASy Swiss-Prot
Match: Q9ZPI6 (Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana OX=3702 GN=AIM1 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.0e-04
Identity = 18/51 (35.29%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVS 52
           +P+GPF+L DL G G+ +A G  + + + DR F+S +  L+ +  R G+++
Sbjct: 528 LPLGPFQLGDLAGHGIGLAVGPIYAKVYGDRMFRSPMTELLLKSGRNGKIN 578

[Close]

BLAST of CsGy6G017085.1 vs. NCBI nr
Match: KAE8647099.1 (hypothetical protein Csa_021744 [Cucumis sativus])

HSP 1 Score: 165 bits (417), Expect = 3.11e-44
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVSPLKLRHLRL 60
           MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVSPLKLRHLRL
Sbjct: 560 MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVSPLKLRHLRL 619

Query: 61  SFCWLYTSGRYFINDSVRYFYL 82
           SFCWLYTSGRYFINDSVR+ +L
Sbjct: 620 SFCWLYTSGRYFINDSVRHGHL 641

[Close]

BLAST of CsGy6G017085.1 vs. NCBI nr
Match: XP_031743671.1 (glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a-like [Cucumis sativus])

HSP 1 Score: 104 bits (259), Expect = 8.92e-23
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGR 49
           MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGR
Sbjct: 531 MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGR 579

[Close]

BLAST of CsGy6G017085.1 vs. NCBI nr
Match: KAG6593976.1 (hypothetical protein SDJN03_13452, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102 bits (255), Expect = 3.09e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVS 51
           MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAG  +
Sbjct: 531 MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGETT 581

[Close]

BLAST of CsGy6G017085.1 vs. NCBI nr
Match: KAG6575075.1 (hypothetical protein SDJN03_25714, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102 bits (255), Expect = 3.09e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVS 51
           MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAG  +
Sbjct: 531 MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGETT 581

[Close]

BLAST of CsGy6G017085.1 vs. NCBI nr
Match: XP_023547607.1 (glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102 bits (255), Expect = 3.09e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVS 51
           MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAG  +
Sbjct: 531 MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGETT 581

[Close]

BLAST of CsGy6G017085.1 vs. ExPASy TrEMBL
Match: A0A6J1KLC6 (3-hydroxyacyl-CoA dehydrogenase OS=Cucurbita maxima OX=3661 GN=LOC111494319 PE=3 SV=1)

HSP 1 Score: 102 bits (255), Expect = 1.50e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVS 51
           MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAG  +
Sbjct: 531 MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGETT 581

[Close]

BLAST of CsGy6G017085.1 vs. ExPASy TrEMBL
Match: A0A6J1EWF3 (3-hydroxyacyl-CoA dehydrogenase OS=Cucurbita moschata OX=3662 GN=LOC111436753 PE=3 SV=1)

HSP 1 Score: 102 bits (255), Expect = 1.50e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVS 51
           MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAG  +
Sbjct: 531 MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGETT 581

[Close]

BLAST of CsGy6G017085.1 vs. ExPASy TrEMBL
Match: A0A0A0KI31 (3-hydroxyacyl-CoA dehydrogenase OS=Cucumis sativus OX=3659 GN=Csa_6G319770 PE=3 SV=1)

HSP 1 Score: 102 bits (255), Expect = 1.50e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVS 51
           MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAG  +
Sbjct: 531 MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGETT 581

[Close]

BLAST of CsGy6G017085.1 vs. ExPASy TrEMBL
Match: A0A6J1CBF0 (3-hydroxyacyl-CoA dehydrogenase OS=Momordica charantia OX=3673 GN=LOC111009683 PE=3 SV=1)

HSP 1 Score: 102 bits (255), Expect = 1.50e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVS 51
           MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAG  +
Sbjct: 531 MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGETT 581

[Close]

BLAST of CsGy6G017085.1 vs. ExPASy TrEMBL
Match: A0A1S3C8F0 (3-hydroxyacyl-CoA dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103497841 PE=3 SV=1)

HSP 1 Score: 102 bits (255), Expect = 1.50e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVS 51
           MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAG  +
Sbjct: 531 MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGETT 581

[Close]

BLAST of CsGy6G017085.1 vs. TAIR 10
Match: AT3G06860.1 (multifunctional protein 2 )

HSP 1 Score: 88.2 bits (217), Expect = 5.8e-18
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVS 52
           MPMGPFRL DLVGFGVAIAT  QF++NF +RT+KSMIIPLMQEDKRAG  +
Sbjct: 531 MPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEAT 581

[Close]

BLAST of CsGy6G017085.1 vs. TAIR 10
Match: AT4G29010.1 (Enoyl-CoA hydratase/isomerase family )

HSP 1 Score: 45.4 bits (106), Expect = 4.3e-05
Identity = 18/51 (35.29%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 1   MPMGPFRLIDLVGFGVAIATGGQFVQNFPDRTFKSMIIPLMQEDKRAGRVS 52
           +P+GPF+L DL G G+ +A G  + + + DR F+S +  L+ +  R G+++
Sbjct: 528 LPLGPFQLGDLAGHGIGLAVGPIYAKVYGDRMFRSPMTELLLKSGRNGKIN 578

The following BLAST results are available for this feature:

BLAST of CsGy6G017085.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49809	9.6e-18	80.39	Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica ...	[more]
Q9ZPI5	8.1e-17	78.43	Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 OS=Arabidopsi...	[more]
Q39659	5.3e-16	81.25	Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis s...	[more]
Q8W1L6	3.5e-04	42.86	Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa su...	[more]
Q9ZPI6	6.0e-04	35.29	Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsi...	[more]

BLAST of CsGy6G017085.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647099.1	3.11e-44	96.34	hypothetical protein Csa_021744 [Cucumis sativus]	[more]
XP_031743671.1	8.92e-23	100.00	glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a-like [Cucumi...	[more]
KAG6593976.1	3.09e-22	94.12	hypothetical protein SDJN03_13452, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6575075.1	3.09e-22	94.12	hypothetical protein SDJN03_25714, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023547607.1	3.09e-22	94.12	glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a-like [Cucurb...	[more]

BLAST of CsGy6G017085.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLC6	1.50e-22	94.12	3-hydroxyacyl-CoA dehydrogenase OS=Cucurbita maxima OX=3661 GN=LOC111494319 PE=3...	[more]
A0A6J1EWF3	1.50e-22	94.12	3-hydroxyacyl-CoA dehydrogenase OS=Cucurbita moschata OX=3662 GN=LOC111436753 PE...	[more]
A0A0A0KI31	1.50e-22	94.12	3-hydroxyacyl-CoA dehydrogenase OS=Cucumis sativus OX=3659 GN=Csa_6G319770 PE=3 ...	[more]
A0A6J1CBF0	1.50e-22	94.12	3-hydroxyacyl-CoA dehydrogenase OS=Momordica charantia OX=3673 GN=LOC111009683 P...	[more]
A0A1S3C8F0	1.50e-22	94.12	3-hydroxyacyl-CoA dehydrogenase OS=Cucumis melo OX=3656 GN=LOC103497841 PE=3 SV=...	[more]

BLAST of CsGy6G017085.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06860.1	5.8e-18	78.43	multifunctional protein 2	[more]
AT4G29010.1	4.3e-05	35.29	Enoyl-CoA hydratase/isomerase family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.1040.50		coord: 1..52 e-value: 1.8E-7 score: 33.2
None	No IPR available	PANTHER	PTHR23309:SF41	BNAC03G34950D PROTEIN	coord: 1..50
None	No IPR available	PANTHER	PTHR23309	3-HYDROXYACYL-COA DEHYROGENASE	coord: 1..50
IPR008927	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	SUPERFAMILY	48179	6-phosphogluconate dehydrogenase C-terminal domain-like	coord: 1..51

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy6G017085	CsGy6G017085	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G017085.1.exon1	CsGy6G017085.1.exon1	exon
CsGy6G017085.1.exon2	CsGy6G017085.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy6G017085.1	cds.CsGy6G017085.1	CDS
cds.CsGy6G017085.1	cds.CsGy6G017085.1_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy6G017085.1	CsGy6G017085.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006635	fatty acid beta-oxidation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005777	peroxisome
molecular_function	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity
molecular_function	GO:0008692	3-hydroxybutyryl-CoA epimerase activity
molecular_function	GO:0004165	dodecenoyl-CoA delta-isomerase activity
molecular_function	GO:0004300	enoyl-CoA hydratase activity
molecular_function	GO:0070403	NAD+ binding