CsGy2G024195.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy2G024195.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	methyltransferase-like protein 13
Location	Gy14Chr2: 31938639 .. 31939020 (+)
Sequence length	267
RNA-Seq Expression	CsGy2G024195.1
Synteny	CsGy2G024195.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGTTCCCGCGGGGCTTGAAAATGACTGGATGTTTTCCACAGAATCCGGACATTATCAGTTTCTATTCAATTTGCCTGGAATTTTGTGTCCGATTCTAGTCGGAGATCAAGAATCGGTGAATGCTGATAATTCCGCTGTTTACAATCGTTCGTTGAAGGAGGTTACCGCTTCGTTGTGGAGTAGACTCGTGGTGAGTTTGCAGCCACTTTTTCTTGCTTTATTTCCAAAGTCATGTTTCGAGAATGCAATTCTTGGTATATCGATTCTCAGTTATGTCGACAACGTGATATGTTGTGAAGTTTTAGATAAATGCATCGGTTCTTCAATTGGTGAATTTCTGGTTGAGAATGTGGAAATCGAGAGAGAATCGGGGATAG

mRNA sequence

ATGTTCGTTCCCGCGGGGCTTGAAAATGACTGGATGTTTTCCACAGAATCCGGACATTATCAGTTTCTATTCAATTTGCCTGGAATTTTGTGTCCGATTCTAGTCGGAGATCAAGAATCGGTGAATGCTGATAATTCCGCTGTTTACAATCGTTCGTTGAAGGAGGTTACCGCTTCGTTGTGGAGTAGACTCGTGATAAATGCATCGGTTCTTCAATTGGTGAATTTCTGGTTGAGAATGTGGAAATCGAGAGAGAATCGGGGATAG

Coding sequence (CDS)

ATGTTCGTTCCCGCGGGGCTTGAAAATGACTGGATGTTTTCCACAGAATCCGGACATTATCAGTTTCTATTCAATTTGCCTGGAATTTTGTGTCCGATTCTAGTCGGAGATCAAGAATCGGTGAATGCTGATAATTCCGCTGTTTACAATCGTTCGTTGAAGGAGGTTACCGCTTCGTTGTGGAGTAGACTCGTGATAAATGCATCGGTTCTTCAATTGGTGAATTTCTGGTTGAGAATGTGGAAATCGAGAGAGAATCGGGGATAG

Protein sequence

MFVPAGLENDWMFSTESGHYQFLFNLPGILCPILVGDQESVNADNSAVYNRSLKEVTASLWSRLVINASVLQLVNFWLRMWKSRENRG*

Homology

[Close]

BLAST of CsGy2G024195.1 vs. NCBI nr
Match: KAE8652231.1 (hypothetical protein Csa_022509 [Cucumis sativus])

HSP 1 Score: 140 bits (352), Expect = 1.46e-39
Identity = 67/76 (88.16%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1  MFVPAGLENDWMFSTESGHYQFLFNLPGILCPILVGDQESVNADNSAVYNRSLKEVTASL 60
          MFVPAGLE DWMFSTESGHYQFLFNLPGILCPILVGDQESVNADNSAVYNRSLKEVTASL
Sbjct: 1  MFVPAGLETDWMFSTESGHYQFLFNLPGILCPILVGDQESVNADNSAVYNRSLKEVTASL 60

Query: 61 WSRLVINASVLQLVNF 76
          WSRLV++   L L  F
Sbjct: 61 WSRLVVSLQPLFLALF 76

[Close]

BLAST of CsGy2G024195.1 vs. NCBI nr
Match: XP_004151324.2 (uncharacterized protein LOC101211787 [Cucumis sativus])

HSP 1 Score: 140 bits (352), Expect = 2.55e-38
Identity = 67/76 (88.16%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1   MFVPAGLENDWMFSTESGHYQFLFNLPGILCPILVGDQESVNADNSAVYNRSLKEVTASL 60
           MFVPAGLE DWMFSTESGHYQFLFNLPGILCPILVGDQESVNADNSAVYNRSLKEVTASL
Sbjct: 44  MFVPAGLETDWMFSTESGHYQFLFNLPGILCPILVGDQESVNADNSAVYNRSLKEVTASL 103

Query: 61  WSRLVINASVLQLVNF 76
           WSRLV++   L L  F
Sbjct: 104 WSRLVVSLQPLFLALF 119

[Close]

BLAST of CsGy2G024195.1 vs. NCBI nr
Match: TYK11745.1 (methyltransferase-like protein 13 [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (271), Expect = 1.42e-25
Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1   MFVPAGLENDWMFSTESGHYQFLFNLPGILCPILVGDQESVNADNSAVYNRSLKEVTASL 60
           MFVPAGLE DWMFSTESGHYQFLF+ PGI   IL+GDQE +N DNSAV+NR   EVTASL
Sbjct: 51  MFVPAGLETDWMFSTESGHYQFLFSSPGISRLILIGDQEPLNRDNSAVFNRPSAEVTASL 110

Query: 61  WSRLVINASVLQLVNF 76
           WS+L ++   L L  F
Sbjct: 111 WSKLAVSLQPLFLALF 126

[Close]

BLAST of CsGy2G024195.1 vs. NCBI nr
Match: XP_008456816.2 (PREDICTED: methyltransferase-like protein 13 [Cucumis melo])

HSP 1 Score: 108 bits (271), Expect = 1.70e-25
Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1   MFVPAGLENDWMFSTESGHYQFLFNLPGILCPILVGDQESVNADNSAVYNRSLKEVTASL 60
           MFVPAGLE DWMFSTESGHYQFLF+ PGI   IL+GDQE +N DNSAV+NR   EVTASL
Sbjct: 76  MFVPAGLETDWMFSTESGHYQFLFSSPGISRLILIGDQEPLNRDNSAVFNRPSAEVTASL 135

Query: 61  WSRLVINASVLQLVNF 76
           WS+L ++   L L  F
Sbjct: 136 WSKLAVSLQPLFLALF 151

[Close]

BLAST of CsGy2G024195.1 vs. NCBI nr
Match: XP_022139329.1 (methyltransferase-like protein 13 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 1.71e-17
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 1   MFVPAGLENDWMFSTESGHYQFLFNLPGILCPILVGDQES-VNADNSAVYNRSLKEVTAS 60
           MFVP G E DW+FSTESGHYQ LFN PGIL  ILVGDQ+S V+ D   +YNRS  E  AS
Sbjct: 51  MFVPPGRETDWIFSTESGHYQLLFNSPGILRLILVGDQQSPVDDDALMIYNRSSDEDLAS 110

Query: 61  LWSRLVIN 67
           +W RL ++
Sbjct: 111 IWIRLEVS 118

[Close]

BLAST of CsGy2G024195.1 vs. ExPASy TrEMBL
Match: A0A0A0LMN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G386160 PE=4 SV=1)

HSP 1 Score: 140 bits (352), Expect = 1.29e-36
Identity = 67/76 (88.16%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 1   MFVPAGLENDWMFSTESGHYQFLFNLPGILCPILVGDQESVNADNSAVYNRSLKEVTASL 60
           MFVPAGLE DWMFSTESGHYQFLFNLPGILCPILVGDQESVNADNSAVYNRSLKEVTASL
Sbjct: 502 MFVPAGLETDWMFSTESGHYQFLFNLPGILCPILVGDQESVNADNSAVYNRSLKEVTASL 561

Query: 61  WSRLVINASVLQLVNF 76
           WSRLV++   L L  F
Sbjct: 562 WSRLVVSLQPLFLALF 577

[Close]

BLAST of CsGy2G024195.1 vs. ExPASy TrEMBL
Match: A0A5D3CJN4 (Methyltransferase-like protein 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00630 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 6.90e-26
Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1   MFVPAGLENDWMFSTESGHYQFLFNLPGILCPILVGDQESVNADNSAVYNRSLKEVTASL 60
           MFVPAGLE DWMFSTESGHYQFLF+ PGI   IL+GDQE +N DNSAV+NR   EVTASL
Sbjct: 51  MFVPAGLETDWMFSTESGHYQFLFSSPGISRLILIGDQEPLNRDNSAVFNRPSAEVTASL 110

Query: 61  WSRLVINASVLQLVNF 76
           WS+L ++   L L  F
Sbjct: 111 WSKLAVSLQPLFLALF 126

[Close]

BLAST of CsGy2G024195.1 vs. ExPASy TrEMBL
Match: A0A1S3C481 (methyltransferase-like protein 13 OS=Cucumis melo OX=3656 GN=LOC103496654 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 8.24e-26
Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1   MFVPAGLENDWMFSTESGHYQFLFNLPGILCPILVGDQESVNADNSAVYNRSLKEVTASL 60
           MFVPAGLE DWMFSTESGHYQFLF+ PGI   IL+GDQE +N DNSAV+NR   EVTASL
Sbjct: 76  MFVPAGLETDWMFSTESGHYQFLFSSPGISRLILIGDQEPLNRDNSAVFNRPSAEVTASL 135

Query: 61  WSRLVINASVLQLVNF 76
           WS+L ++   L L  F
Sbjct: 136 WSKLAVSLQPLFLALF 151

[Close]

BLAST of CsGy2G024195.1 vs. ExPASy TrEMBL
Match: A0A6J1CCM5 (methyltransferase-like protein 13 OS=Momordica charantia OX=3673 GN=LOC111010269 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 8.29e-18
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 1   MFVPAGLENDWMFSTESGHYQFLFNLPGILCPILVGDQES-VNADNSAVYNRSLKEVTAS 60
           MFVP G E DW+FSTESGHYQ LFN PGIL  ILVGDQ+S V+ D   +YNRS  E  AS
Sbjct: 51  MFVPPGRETDWIFSTESGHYQLLFNSPGILRLILVGDQQSPVDDDALMIYNRSSDEDLAS 110

Query: 61  LWSRLVIN 67
           +W RL ++
Sbjct: 111 IWIRLEVS 118

[Close]

BLAST of CsGy2G024195.1 vs. ExPASy TrEMBL
Match: A0A0A0L5C4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017010 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.44e-16
Identity = 44/77 (57.14%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 1   MFVPAGLENDWMFSTESGHYQFLFNLPGILCPILVGDQESVNA-DNSAVYNRSLKEVTAS 60
           MFVP GLE DW+FSTESGHY  LF+ PGI   ILVGDQE V   D+  +YNR   + +AS
Sbjct: 51  MFVPPGLETDWIFSTESGHYHLLFDSPGISRLILVGDQEPVTGHDSLPIYNR---QDSAS 110

Query: 61  LWSRLVINASVLQLVNF 76
            WSRLV++   L L  F
Sbjct: 111 TWSRLVVSLQPLLLALF 124

[Close]

BLAST of CsGy2G024195.1 vs. TAIR 10
Match: AT5G04610.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-08
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 1   MFVPAGLENDWMFSTESGHYQFLFNLPGILCPILVGDQESVNADNSAVYNR 52
           + VP   E+DW+FSTESG  Q L N+P I   IL+GD    ++D  AVY+R
Sbjct: 53  ILVPKHRESDWIFSTESGQLQLLLNMPEISRLILIGDDHDTDSDLPAVYHR 103

The following BLAST results are available for this feature:

BLAST of CsGy2G024195.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy2G024195.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652231.1	1.46e-39	88.16	hypothetical protein Csa_022509 [Cucumis sativus]	[more]
XP_004151324.2	2.55e-38	88.16	uncharacterized protein LOC101211787 [Cucumis sativus]	[more]
TYK11745.1	1.42e-25	68.42	methyltransferase-like protein 13 [Cucumis melo var. makuwa]	[more]
XP_008456816.2	1.70e-25	68.42	PREDICTED: methyltransferase-like protein 13 [Cucumis melo]	[more]
XP_022139329.1	1.71e-17	63.24	methyltransferase-like protein 13 [Momordica charantia]	[more]

BLAST of CsGy2G024195.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMN0	1.29e-36	88.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G386160 PE=4 SV=1	[more]
A0A5D3CJN4	6.90e-26	68.42	Methyltransferase-like protein 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C481	8.24e-26	68.42	methyltransferase-like protein 13 OS=Cucumis melo OX=3656 GN=LOC103496654 PE=4 S...	[more]
A0A6J1CCM5	8.29e-18	63.24	methyltransferase-like protein 13 OS=Momordica charantia OX=3673 GN=LOC111010269...	[more]
A0A0A0L5C4	1.44e-16	57.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017010 PE=4 SV=1	[more]

BLAST of CsGy2G024195.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04610.1	1.2e-08	49.02	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G024195	CsGy2G024195	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G024195.1.exon1	CsGy2G024195.1.exon1	exon
CsGy2G024195.1.exon2	CsGy2G024195.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy2G024195.1	cds.CsGy2G024195.1	CDS
cds.CsGy2G024195.1	cds.CsGy2G024195.1_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G024195.1	CsGy2G024195.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0016740	transferase activity