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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCTAGAGATGAAGTAAGTTTCAATGTGGGGTGGAGGGAGCTGTTGGATGAATGGTTTGTTATCCAAACAAGGCTGCAATGGATCAATCTTGTCATGCCTGCCATCTGCTTTGATCACATAGCTTTTCAGATAGATATATGCTTGTAAAGCTGAACAGTAATATGTTTTGTTATTATCCAATAATTTGATTTGCTGTAAGGCTTATGGATTTGCCAAAATCCCAACCCAGTTTCTGTGGAGTGCAAGAGAAGGAAAAGACCAATGGGATCCACCATAGCAGTGAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCACCTTATATTTTCCTCTGTACCATCACATAATTACCTGA mRNA sequence ATGGCTAGAGATGAAGTAAGTTTCAATGTGGGGTGGAGGGAGCTGTTGGATGAATGGTTTGTTATCCAAACAAGGCTGCAATGGATCAATCTTGTCATGCCTGCCATCTGCTTTGATCACATAGCTTTTCAGATAGATATATGCTTGCTTATGGATTTGCCAAAATCCCAACCCAGTTTCTGTGGAGTGCAAGAGAAGGAAAAGACCAATGGGATCCACCATAGCAGTGAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCACCTTATATTTTCCTCTGTACCATCACATAATTACCTGA Coding sequence (CDS) ATGGCTAGAGATGAAGTAAGTTTCAATGTGGGGTGGAGGGAGCTGTTGGATGAATGGTTTGTTATCCAAACAAGGCTGCAATGGATCAATCTTGTCATGCCTGCCATCTGCTTTGATCACATAGCTTTTCAGATAGATATATGCTTGCTTATGGATTTGCCAAAATCCCAACCCAGTTTCTGTGGAGTGCAAGAGAAGGAAAAGACCAATGGGATCCACCATAGCAGTGAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCACCTTATATTTTCCTCTGTACCATCACATAATTACCTGA Protein sequence MARDEVSFNVGWRELLDEWFVIQTRLQWINLVMPAICFDHIAFQIDICLLMDLPKSQPSFCGVQEKEKTNGIHHSSEMVAEFNAANPTCSTLYFPLYHHIIT
Homology
BLAST of Cp4.1LG20g00400.1 vs. NCBI nr
Match: KGN63987.1 (hypothetical protein Csa_014108 [Cucumis sativus]) HSP 1 Score: 111 bits (278), Expect = 6.33e-30 Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0
Query: 33 MPAICFDHIAFQIDICLLMDLPKSQPSFCGVQEKEKTNGIHHSSEMVAEFNAANPTCSTL 92
MPAICFDHIAFQ CLL QPSFCGV+ KEKTNGIHHSS+MVAEFNAANPTCS+L
Sbjct: 1 MPAICFDHIAFQ---CLL----DFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSL 60
Query: 93 YFPLYHHIIT 102
YF LYHH+IT
Sbjct: 61 YFSLYHHLIT 63
BLAST of Cp4.1LG20g00400.1 vs. NCBI nr
Match: KAG6584453.1 (hypothetical protein SDJN03_20385, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 100 bits (249), Expect = 2.23e-25 Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0
Query: 51 MDLPKSQPSFCGVQEKEKTNGIHHSSEMVAEFNAANPTCSTLYFPL 96
MDLPKSQPSFCGVQEKEKTNGIHHSSEMVAEFNAANPTCSTLYFPL
Sbjct: 1 MDLPKSQPSFCGVQEKEKTNGIHHSSEMVAEFNAANPTCSTLYFPL 46
BLAST of Cp4.1LG20g00400.1 vs. ExPASy TrEMBL
Match: A0A0A0LTA5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033070 PE=4 SV=1) HSP 1 Score: 111 bits (278), Expect = 3.06e-30 Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0
Query: 33 MPAICFDHIAFQIDICLLMDLPKSQPSFCGVQEKEKTNGIHHSSEMVAEFNAANPTCSTL 92
MPAICFDHIAFQ CLL QPSFCGV+ KEKTNGIHHSS+MVAEFNAANPTCS+L
Sbjct: 1 MPAICFDHIAFQ---CLL----DFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSL 60
Query: 93 YFPLYHHIIT 102
YF LYHH+IT
Sbjct: 61 YFSLYHHLIT 63
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KGN63987.1 | 6.33e-30 | 78.57 | hypothetical protein Csa_014108 [Cucumis sativus] | [more] |
| KAG6584453.1 | 2.23e-25 | 100.00 | hypothetical protein SDJN03_20385, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LTA5 | 3.06e-30 | 78.57 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033070 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Cp4.1LG20g00400.1:exon:001 | Cp4.1LG20g00400.1:exon:001 | exon |
| Cp4.1LG20g00400.1:exon:002 | Cp4.1LG20g00400.1:exon:002 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Cp4.1LG20g00400.1:cds:001 | Cp4.1LG20g00400.1:cds:001 | CDS |
| Cp4.1LG20g00400.1:cds:002 | Cp4.1LG20g00400.1:cds:002 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Cp4.1LG20g00400.1 | Cp4.1LG20g00400.1-protein | polypeptide |
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