Cp4.1LG20g00400 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG20g00400
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG20: 136388 .. 136752 (-)
RNA-Seq ExpressionCp4.1LG20g00400
SyntenyCp4.1LG20g00400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGAGATGAAGTAAGTTTCAATGTGGGGTGGAGGGAGCTGTTGGATGAATGGTTTGTTATCCAAACAAGGCTGCAATGGATCAATCTTGTCATGCCTGCCATCTGCTTTGATCACATAGCTTTTCAGATAGATATATGCTTGTAAAGCTGAACAGTAATATGTTTTGTTATTATCCAATAATTTGATTTGCTGTAAGGCTTATGGATTTGCCAAAATCCCAACCCAGTTTCTGTGGAGTGCAAGAGAAGGAAAAGACCAATGGGATCCACCATAGCAGTGAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCACCTTATATTTTCCTCTGTACCATCACATAATTACCTGA

mRNA sequence

ATGGCTAGAGATGAAGTAAGTTTCAATGTGGGGTGGAGGGAGCTGTTGGATGAATGGTTTGTTATCCAAACAAGGCTGCAATGGATCAATCTTGTCATGCCTGCCATCTGCTTTGATCACATAGCTTTTCAGATAGATATATGCTTGCTTATGGATTTGCCAAAATCCCAACCCAGTTTCTGTGGAGTGCAAGAGAAGGAAAAGACCAATGGGATCCACCATAGCAGTGAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCACCTTATATTTTCCTCTGTACCATCACATAATTACCTGA

Coding sequence (CDS)

ATGGCTAGAGATGAAGTAAGTTTCAATGTGGGGTGGAGGGAGCTGTTGGATGAATGGTTTGTTATCCAAACAAGGCTGCAATGGATCAATCTTGTCATGCCTGCCATCTGCTTTGATCACATAGCTTTTCAGATAGATATATGCTTGCTTATGGATTTGCCAAAATCCCAACCCAGTTTCTGTGGAGTGCAAGAGAAGGAAAAGACCAATGGGATCCACCATAGCAGTGAGATGGTTGCAGAATTTAATGCTGCCAACCCAACTTGTTCCACCTTATATTTTCCTCTGTACCATCACATAATTACCTGA

Protein sequence

MARDEVSFNVGWRELLDEWFVIQTRLQWINLVMPAICFDHIAFQIDICLLMDLPKSQPSFCGVQEKEKTNGIHHSSEMVAEFNAANPTCSTLYFPLYHHIIT
Homology
[Close]
BLAST of Cp4.1LG20g00400 vs. NCBI nr
Match: KGN63987.1 (hypothetical protein Csa_014108 [Cucumis sativus])

HSP 1 Score: 111 bits (278), Expect = 6.33e-30
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 33  MPAICFDHIAFQIDICLLMDLPKSQPSFCGVQEKEKTNGIHHSSEMVAEFNAANPTCSTL 92
           MPAICFDHIAFQ   CLL      QPSFCGV+ KEKTNGIHHSS+MVAEFNAANPTCS+L
Sbjct: 1   MPAICFDHIAFQ---CLL----DFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSL 60

Query: 93  YFPLYHHIIT 102
           YF LYHH+IT
Sbjct: 61  YFSLYHHLIT 63

[Close]
BLAST of Cp4.1LG20g00400 vs. NCBI nr
Match: KAG6584453.1 (hypothetical protein SDJN03_20385, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100 bits (249), Expect = 2.23e-25
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 51 MDLPKSQPSFCGVQEKEKTNGIHHSSEMVAEFNAANPTCSTLYFPL 96
          MDLPKSQPSFCGVQEKEKTNGIHHSSEMVAEFNAANPTCSTLYFPL
Sbjct: 1  MDLPKSQPSFCGVQEKEKTNGIHHSSEMVAEFNAANPTCSTLYFPL 46

[Close]
BLAST of Cp4.1LG20g00400 vs. ExPASy TrEMBL
Match: A0A0A0LTA5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033070 PE=4 SV=1)

HSP 1 Score: 111 bits (278), Expect = 3.06e-30
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 33  MPAICFDHIAFQIDICLLMDLPKSQPSFCGVQEKEKTNGIHHSSEMVAEFNAANPTCSTL 92
           MPAICFDHIAFQ   CLL      QPSFCGV+ KEKTNGIHHSS+MVAEFNAANPTCS+L
Sbjct: 1   MPAICFDHIAFQ---CLL----DFQPSFCGVKGKEKTNGIHHSSKMVAEFNAANPTCSSL 60

Query: 93  YFPLYHHIIT 102
           YF LYHH+IT
Sbjct: 61  YFSLYHHLIT 63

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g00400 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g00400 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63987.16.33e-3078.57hypothetical protein Csa_014108 [Cucumis sativus][more]
KAG6584453.12.23e-25100.00hypothetical protein SDJN03_20385, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cp4.1LG20g00400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTA53.06e-3078.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033070 PE=4 SV=1[more]
BLAST of Cp4.1LG20g00400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g00400.1Cp4.1LG20g00400.1mRNA