Cp4.1LG17g09880.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG17g09880.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG17: 7484964 .. 7486811 (-)
Sequence length	1848
RNA-Seq Expression	Cp4.1LG17g09880.1
Synteny	Cp4.1LG17g09880.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCACTCGACAGCCCAGAATGCTGTTAATCTGCTTCGGCGTCTTGGAAGGTCTGGCATGGTTGATAAGGCGCTTGCTGTGTTCTCTGAACTTGATCCACATAAGAAAAACACATATGTTCGTAATGTGATCATTGATTTGCTTCTGAAATCTGGGCGAGTTGATAATGCATTGAATGTGCTCGACGAAATGCTGCTTCCAGATTCGGAGTTTCGACCCAATGATATAACTGCTGATATTGTTTTCACTAAATTGTTGAAGATAAATGGGTCGGATTGGAGAGTCAAGGAAAATGAAATTGCTGGGTTGGTAGCCAAATTTGGTAAACACCATGTTGTTCCTAATCCCATTACATTAACCCAGTTGATCTCCAAGCTTTGTAGGAGTAGAAATATCGATCTTGCATGGAGTGTTTTAGATGATTTGATGACATGGAATGGTCTTAAAGATGCTGCACCCTGCAATGCGCTCTTAACAGGTTTGGGAAAGGAGAGGGAATTTGAGAAAATGAATTTGCTAATGCGAAAGATGAAGGACATGAATGTTCAACCTAATGTTATAACTTTTGGTATTCTTATCAACCATATGTGTAAGTTCAGAATGATTGATGATGCACTAGAGGTGTTTGAGAAAATGAAGGGCGAAAAGGAGGAGGCCAAGGCCGTTGCGCCTGATGCAATCACTTACAATACATTGATTGATGGGCTCTGTAAAGTGGGTAGACAAGAAGAAGGATTGCGCTTGCTGGGAACAATGAGATCTGATGGCTGTAAACCCAATACCGTTACCTACAATTGTTTGATTGATGGGTACTGTAAGGCAGGCGCAATCGAGCCAGCCCATGCGCTCTATAACGAGATGGTCAATGAACAAGTCGTGCCAAATGTAATCACCCTCAATACTTTAGTTGATGGAATGTGCAAGCATGGCAGAATAAGCAGCGCGGTTGAGTTCTTCAGGGAAATGCAGCAGAAGGGCTTGAAAGGAAATTCTGTTACTTACACGGTGTTCATTAATGCTTTTTGCAAAGTGAACAATATTGATAAGGCAATAGAATTTTTTGATGAAATGTCCAAAGCTGGATGTTTTCCTGATGCTATTGTCTATTATACTTTGATATGTGGTTTAGCCCAAGCTGGAAGGTTGGATGATGCCACCTCCGTTGCGTCGAGGATGAAAGCGGCAGGGTTTCGACTAGATCTTGTTTGCTACAATCTTCTTATCAGTGAGTTCTGTAAGAAGAACAAATTAGATGAAGCTAATGAATTGCTGGATGAAATGGAGGTGGTTGGAATCAAGCCTGACAGTGTCACATACAACACTTTGATTTCTTACTTCAGTAAAATGGGGAATCTAGAATTAGCCTTTAAATTTATGGAAAAGATGACCAAGGAGGCGTGTCTTTTACCGAGTGTCTTCACTTATGGAGCTGTGATTCATGCATATTGCTTGAACAACAATACTGATGAAGCCATGAAGCTTTTCAAGGAAATGAGCGCCACATCAAAGGTTCCTCCCAACACAGTGATATACAATATATTGATAGATTCTCTATGCAAAAGAAATGAGGTCAGTTCCGCTCTTGCTCTATTTGACGATATGAACGTTAACGGGGTTAAGCCGAACACCACAACATATAATGCTATTTTGAAAGGGCTTAAGGAGAAGAAATGGTTGGAGAAAGCGTTAGAAGTTATGGATAGAATGGTGGAACAAGCGTGTAATGCTGATTATATAACAATGGAGATTTTAACAGAATGGCTTTCTTCCGTGGGTGAAACTGCAAAATTGAAAAGATTTACACAGGGATACAAGGTTTCTGATTTTGCAGCCTCAAGTAGTTGA

mRNA sequence

ATGGCTCACTCGACAGCCCAGAATGCTGTTAATCTGCTTCGGCGTCTTGGAAGGTCTGGCATGGTTGATAAGGCGCTTGCTGTGTTCTCTGAACTTGATCCACATAAGAAAAACACATATGTTCGTAATGTGATCATTGATTTGCTTCTGAAATCTGGGCGAGTTGATAATGCATTGAATGTGCTCGACGAAATGCTGCTTCCAGATTCGGAGTTTCGACCCAATGATATAACTGCTGATATTGTTTTCACTAAATTGTTGAAGATAAATGGGTCGGATTGGAGAGTCAAGGAAAATGAAATTGCTGGGTTGGTAGCCAAATTTGGTAAACACCATGTTGTTCCTAATCCCATTACATTAACCCAGTTGATCTCCAAGCTTTGTAGGAGTAGAAATATCGATCTTGCATGGAGTGTTTTAGATGATTTGATGACATGGAATGGTCTTAAAGATGCTGCACCCTGCAATGCGCTCTTAACAGGTTTGGGAAAGGAGAGGGAATTTGAGAAAATGAATTTGCTAATGCGAAAGATGAAGGACATGAATGTTCAACCTAATGTTATAACTTTTGGTATTCTTATCAACCATATGTGTAAGTTCAGAATGATTGATGATGCACTAGAGGTGTTTGAGAAAATGAAGGGCGAAAAGGAGGAGGCCAAGGCCGTTGCGCCTGATGCAATCACTTACAATACATTGATTGATGGGCTCTGTAAAGTGGGTAGACAAGAAGAAGGATTGCGCTTGCTGGGAACAATGAGATCTGATGGCTGTAAACCCAATACCGTTACCTACAATTGTTTGATTGATGGGTACTGTAAGGCAGGCGCAATCGAGCCAGCCCATGCGCTCTATAACGAGATGGTCAATGAACAAGTCGTGCCAAATGTAATCACCCTCAATACTTTAGTTGATGGAATGTGCAAGCATGGCAGAATAAGCAGCGCGGTTGAGTTCTTCAGGGAAATGCAGCAGAAGGGCTTGAAAGGAAATTCTGTTACTTACACGGTGTTCATTAATGCTTTTTGCAAAGTGAACAATATTGATAAGGCAATAGAATTTTTTGATGAAATGTCCAAAGCTGGATGTTTTCCTGATGCTATTGTCTATTATACTTTGATATGTGGTTTAGCCCAAGCTGGAAGGTTGGATGATGCCACCTCCGTTGCGTCGAGGATGAAAGCGGCAGGGTTTCGACTAGATCTTGTTTGCTACAATCTTCTTATCAGTGAGTTCTGTAAGAAGAACAAATTAGATGAAGCTAATGAATTGCTGGATGAAATGGAGGTGGTTGGAATCAAGCCTGACAGTGTCACATACAACACTTTGATTTCTTACTTCAGTAAAATGGGGAATCTAGAATTAGCCTTTAAATTTATGGAAAAGATGACCAAGGAGGCGTGTCTTTTACCGAGTGTCTTCACTTATGGAGCTGTGATTCATGCATATTGCTTGAACAACAATACTGATGAAGCCATGAAGCTTTTCAAGGAAATGAGCGCCACATCAAAGGTTCCTCCCAACACAGTGATATACAATATATTGATAGATTCTCTATGCAAAAGAAATGAGGTCAGTTCCGCTCTTGCTCTATTTGACGATATGAACGTTAACGGGGTTAAGCCGAACACCACAACATATAATGCTATTTTGAAAGGGCTTAAGGAGAAGAAATGGTTGGAGAAAGCGTTAGAAGTTATGGATAGAATGGTGGAACAAGCGTGTAATGCTGATTATATAACAATGGAGATTTTAACAGAATGGCTTTCTTCCGTGGGTGAAACTGCAAAATTGAAAAGATTTACACAGGGATACAAGGTTTCTGATTTTGCAGCCTCAAGTAGTTGA

Coding sequence (CDS)

ATGGCTCACTCGACAGCCCAGAATGCTGTTAATCTGCTTCGGCGTCTTGGAAGGTCTGGCATGGTTGATAAGGCGCTTGCTGTGTTCTCTGAACTTGATCCACATAAGAAAAACACATATGTTCGTAATGTGATCATTGATTTGCTTCTGAAATCTGGGCGAGTTGATAATGCATTGAATGTGCTCGACGAAATGCTGCTTCCAGATTCGGAGTTTCGACCCAATGATATAACTGCTGATATTGTTTTCACTAAATTGTTGAAGATAAATGGGTCGGATTGGAGAGTCAAGGAAAATGAAATTGCTGGGTTGGTAGCCAAATTTGGTAAACACCATGTTGTTCCTAATCCCATTACATTAACCCAGTTGATCTCCAAGCTTTGTAGGAGTAGAAATATCGATCTTGCATGGAGTGTTTTAGATGATTTGATGACATGGAATGGTCTTAAAGATGCTGCACCCTGCAATGCGCTCTTAACAGGTTTGGGAAAGGAGAGGGAATTTGAGAAAATGAATTTGCTAATGCGAAAGATGAAGGACATGAATGTTCAACCTAATGTTATAACTTTTGGTATTCTTATCAACCATATGTGTAAGTTCAGAATGATTGATGATGCACTAGAGGTGTTTGAGAAAATGAAGGGCGAAAAGGAGGAGGCCAAGGCCGTTGCGCCTGATGCAATCACTTACAATACATTGATTGATGGGCTCTGTAAAGTGGGTAGACAAGAAGAAGGATTGCGCTTGCTGGGAACAATGAGATCTGATGGCTGTAAACCCAATACCGTTACCTACAATTGTTTGATTGATGGGTACTGTAAGGCAGGCGCAATCGAGCCAGCCCATGCGCTCTATAACGAGATGGTCAATGAACAAGTCGTGCCAAATGTAATCACCCTCAATACTTTAGTTGATGGAATGTGCAAGCATGGCAGAATAAGCAGCGCGGTTGAGTTCTTCAGGGAAATGCAGCAGAAGGGCTTGAAAGGAAATTCTGTTACTTACACGGTGTTCATTAATGCTTTTTGCAAAGTGAACAATATTGATAAGGCAATAGAATTTTTTGATGAAATGTCCAAAGCTGGATGTTTTCCTGATGCTATTGTCTATTATACTTTGATATGTGGTTTAGCCCAAGCTGGAAGGTTGGATGATGCCACCTCCGTTGCGTCGAGGATGAAAGCGGCAGGGTTTCGACTAGATCTTGTTTGCTACAATCTTCTTATCAGTGAGTTCTGTAAGAAGAACAAATTAGATGAAGCTAATGAATTGCTGGATGAAATGGAGGTGGTTGGAATCAAGCCTGACAGTGTCACATACAACACTTTGATTTCTTACTTCAGTAAAATGGGGAATCTAGAATTAGCCTTTAAATTTATGGAAAAGATGACCAAGGAGGCGTGTCTTTTACCGAGTGTCTTCACTTATGGAGCTGTGATTCATGCATATTGCTTGAACAACAATACTGATGAAGCCATGAAGCTTTTCAAGGAAATGAGCGCCACATCAAAGGTTCCTCCCAACACAGTGATATACAATATATTGATAGATTCTCTATGCAAAAGAAATGAGGTCAGTTCCGCTCTTGCTCTATTTGACGATATGAACGTTAACGGGGTTAAGCCGAACACCACAACATATAATGCTATTTTGAAAGGGCTTAAGGAGAAGAAATGGTTGGAGAAAGCGTTAGAAGTTATGGATAGAATGGTGGAACAAGCGTGTAATGCTGATTATATAACAATGGAGATTTTAACAGAATGGCTTTCTTCCGTGGGTGAAACTGCAAAATTGAAAAGATTTACACAGGGATACAAGGTTTCTGATTTTGCAGCCTCAAGTAGTTGA

Protein sequence

MAHSTAQNAVNLLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLPDSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKVGRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITLNTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSKAGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDEANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVIHAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGVKPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKRFTQGYKVSDFAASSS

Homology

[Close]

BLAST of Cp4.1LG17g09880.1 vs. ExPASy Swiss-Prot
Match: Q9M316 (Pentatricopeptide repeat-containing protein At3g61520, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g61520 PE=2 SV=1)

HSP 1 Score: 567.4 bits (1461), Expect = 2.0e-160
Identity = 291/599 (48.58%), Postives = 406/599 (67.78%), Query Frame = 0


Query: 12  LLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLPDSE 71
           L+R  GR GMV++++ V+  LD + KN+ VRNV++D+LL++G VD+A  VLDEML  +S 
Sbjct: 158 LIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESV 217

Query: 72  FRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLCRSR 131
           F PN ITADIV  ++ K       + E +I  L+++F  H V PN + LT+ IS LC++ 
Sbjct: 218 FPPNRITADIVLHEVWK----GRLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNA 277

Query: 132 NIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVITFG 191
             + AW +L DLM      +A P NALL+ LG+  +  +MN L+ KM ++ ++P+V+T G
Sbjct: 278 RANAAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLG 337

Query: 192 ILINHMCKFRMIDDALEVFEKMKGEK-EEAKAVAPDAITYNTLIDGLCKVGRQEEGLRLL 251
           ILIN +CK R +D+ALEVFEKM+G++ ++   +  D+I +NTLIDGLCKVGR +E   LL
Sbjct: 338 ILINTLCKSRRVDEALEVFEKMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELL 397

Query: 252 GTMR-SDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITLNTLVDGMCK 311
             M+  + C PN VTYNCLIDGYC+AG +E A  + + M  +++ PNV+T+NT+V GMC+
Sbjct: 398 VRMKLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCR 457

Query: 312 HGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSKAGCFPDAIV 371
           H  ++ AV FF +M+++G+KGN VTY   I+A C V+N++KA+ ++++M +AGC PDA +
Sbjct: 458 HHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKI 517

Query: 372 YYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDEANELLDEME 431
           YY LI GL Q  R  DA  V  ++K  GF LDL+ YN+LI  FC KN  ++  E+L +ME
Sbjct: 518 YYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDME 577

Query: 432 VVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVIHAYCLNNNT 491
             G KPDS+TYNTLIS+F K  + E   + ME+M +E  L P+V TYGAVI AYC     
Sbjct: 578 KEGKKPDSITYNTLISFFGKHKDFESVERMMEQM-REDGLDPTVTTYGAVIDAYCSVGEL 637

Query: 492 DEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGVKPNTTTYNA 551
           DEA+KLFK+M   SKV PNTVIYNILI++  K      AL+L ++M +  V+PN  TYNA
Sbjct: 638 DEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNA 697

Query: 552 ILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKRFTQGYKVS 609
           + K L EK   E  L++MD MVEQ+C  + ITMEIL E LS   E  KL++F QGY V+
Sbjct: 698 LFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKLRKFMQGYSVA 751

[Close]

BLAST of Cp4.1LG17g09880.1 vs. ExPASy Swiss-Prot
Match: Q9LKU8 (Pentatricopeptide repeat-containing protein At5g28460 OS=Arabidopsis thaliana OX=3702 GN=At5g28460 PE=2 SV=1)

HSP 1 Score: 566.6 bits (1459), Expect = 3.4e-160
Identity = 290/599 (48.41%), Postives = 407/599 (67.95%), Query Frame = 0


Query: 12  LLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLPDSE 71
           L+R  GR GMV++++ V+  LD + KN+ VRNV++D+LL++G VD+A  VLDEML  +S 
Sbjct: 158 LIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESV 217

Query: 72  FRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLCRSR 131
           F PN ITADIV  ++ K    +  + E +I  L+++F  H V PN + LT+ IS LC++ 
Sbjct: 218 FPPNRITADIVLHEVWK----ERLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNA 277

Query: 132 NIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVITFG 191
             + AW +L DLM      +A P NALL+ LG+  +  +MN L+ KM ++ ++P+V+T G
Sbjct: 278 RANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLG 337

Query: 192 ILINHMCKFRMIDDALEVFEKMKGEK-EEAKAVAPDAITYNTLIDGLCKVGRQEEGLRLL 251
           ILIN +CK R +D+ALEVFE+M+G++ ++   +  D+I +NTLIDGLCKVGR +E   LL
Sbjct: 338 ILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELL 397

Query: 252 GTMR-SDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITLNTLVDGMCK 311
             M+  + C PN VTYNCLIDGYC+AG +E A  + + M  +++ PNV+T+NT+V GMC+
Sbjct: 398 VRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCR 457

Query: 312 HGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSKAGCFPDAIV 371
           H  ++ AV FF +M+++G+KGN VTY   I+A C V+N++KA+ ++++M +AGC PDA +
Sbjct: 458 HHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKI 517

Query: 372 YYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDEANELLDEME 431
           YY LI GL Q  R  DA  V  ++K  GF LDL+ YN+LI  FC KN  ++  E+L +ME
Sbjct: 518 YYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDME 577

Query: 432 VVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVIHAYCLNNNT 491
             G KPDS+TYNTLIS+F K  + E   + ME+M +E  L P+V TYGAVI AYC     
Sbjct: 578 KEGKKPDSITYNTLISFFGKHKDFESVERMMEQM-REDGLDPTVTTYGAVIDAYCSVGEL 637

Query: 492 DEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGVKPNTTTYNA 551
           DEA+KLFK+M   SKV PNTVIYNILI++  K      AL+L ++M +  V+PN  TYNA
Sbjct: 638 DEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNA 697

Query: 552 ILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKRFTQGYKVS 609
           + K L EK   E  L++MD MVEQ+C  + ITMEIL E LS   E  KL++F QGY V+
Sbjct: 698 LFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKLRKFMQGYSVA 751

[Close]

BLAST of Cp4.1LG17g09880.1 vs. ExPASy Swiss-Prot
Match: Q0WKV3 (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12300 PE=2 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.9e-71
Identity = 162/491 (32.99%), Postives = 246/491 (50.10%), Query Frame = 0


Query: 103 GLVAKFGKHHVVPNPITLTQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGL 162
           G + K G     PN IT + LI+ LC    +  A  ++D ++      D    N L+ GL
Sbjct: 147 GKIIKLGYE---PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGL 206

Query: 163 ---GKEREFEKMNLLMRKMKDMNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEE 222
              GKE E     LL+ KM +   QPN +T+G ++N MCK      A+E+  KM     E
Sbjct: 207 CLSGKEAE---AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKM-----E 266

Query: 223 AKAVAPDAITYNTLIDGLCKVGRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIE 282
            + +  DA+ Y+ +IDGLCK G  +    L   M   G   N +TYN LI G+C AG  +
Sbjct: 267 ERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWD 326

Query: 283 PAHALYNEMVNEQVVPNVITLNTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFI 342
               L  +M+  ++ PNV+T + L+D   K G++  A E  +EM  +G+  +++TYT  I
Sbjct: 327 DGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLI 386

Query: 343 NAFCKVNNIDKAIEFFDEMSKAGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFR 402
           + FCK N++DKA +  D M   GC P+   +  LI G  +A R+DD   +  +M   G  
Sbjct: 387 DGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVV 446

Query: 403 LDLVCYNLLISEFCKKNKLDEANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKF 462
            D V YN LI  FC+  KL+ A EL  EM    + P+ VTY  L+      G  E A + 
Sbjct: 447 ADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEI 506

Query: 463 MEKMTKEACLLPSVFTYGAVIHAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSL 522
            EK+ K    L  +  Y  +IH  C  +  D+A  LF  +     V P    YNI+I  L
Sbjct: 507 FEKIEKSKMEL-DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG-VKPGVKTYNIMIGGL 566

Query: 523 CKRNEVSSALALFDDMNVNGVKPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADY 582
           CK+  +S A  LF  M  +G  P+  TYN +++         K++++++ +     + D 
Sbjct: 567 CKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDA 624

Query: 583 ITMEILTEWLS 591
            T++++ + LS
Sbjct: 627 STIKMVIDMLS 624

[Close]

BLAST of Cp4.1LG17g09880.1 vs. ExPASy Swiss-Prot
Match: Q9LPX2 (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.2e-68
Identity = 153/495 (30.91%), Postives = 243/495 (49.09%), Query Frame = 0


Query: 103 GLVAKFGKHHVVPNPITLTQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGL 162
           G + K G     P+ +    L++ LC    +  A  ++D ++           N L+ GL
Sbjct: 147 GKIMKLGYE---PDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGL 206

Query: 163 GKEREFEKMNLLMRKMKDMNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKA 222
               +     +L+ +M +   QPN +T+G ++N MCK      A+E+  KM     E + 
Sbjct: 207 CLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKM-----EERN 266

Query: 223 VAPDAITYNTLIDGLCKVGRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAH 282
           +  DA+ Y+ +IDGLCK G  +    L   M   G K + +TYN LI G+C AG  +   
Sbjct: 267 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGA 326

Query: 283 ALYNEMVNEQVVPNVITLNTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAF 342
            L  +M+  ++ PNV+T + L+D   K G++  A +  +EM Q+G+  N++TY   I+ F
Sbjct: 327 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 386

Query: 343 CKVNNIDKAIEFFDEMSKAGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDL 402
           CK N +++AI+  D M   GC PD + +  LI G  +A R+DD   +   M   G   + 
Sbjct: 387 CKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANT 446

Query: 403 VCYNLLISEFCKKNKLDEANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEK 462
           V YN L+  FC+  KL+ A +L  EM    ++PD V+Y  L+      G LE A +   K
Sbjct: 447 VTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGK 506

Query: 463 MTKEACLLPSVFTYGAVIHAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKR 522
           + K    L  +  Y  +IH  C  +  D+A  LF  +     V  +   YNI+I  LC++
Sbjct: 507 IEKSKMEL-DIGIYMIIIHGMCNASKVDDAWDLFCSLPLKG-VKLDARAYNIMISELCRK 566

Query: 523 NEVSSALALFDDMNVNGVKPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITM 582
           + +S A  LF  M   G  P+  TYN +++          A E+++ M      AD  T+
Sbjct: 567 DSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTV 626

Query: 583 EILTEWLSSVGETAK 598
           +++   LSS GE  K
Sbjct: 627 KMVINMLSS-GELDK 630

[Close]

BLAST of Cp4.1LG17g09880.1 vs. ExPASy Swiss-Prot
Match: Q9FIX3 (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 8.9e-68
Identity = 144/470 (30.64%), Postives = 249/470 (52.98%), Query Frame = 0


Query: 123 LISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMN 182
           LI K     ++  A   +  ++++N + DA         +  +R       + ++M +  
Sbjct: 149 LIDKALSIVHLAQAHGFMPGVLSYNAVLDAT--------IRSKRNISFAENVFKEMLESQ 208

Query: 183 VQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKVGR 242
           V PNV T+ ILI   C    ID AL +F+KM     E K   P+ +TYNTLIDG CK+ +
Sbjct: 209 VSPNVFTYNILIRGFCFAGNIDVALTLFDKM-----ETKGCLPNVVTYNTLIDGYCKLRK 268

Query: 243 QEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITLNT 302
            ++G +LL +M   G +PN ++YN +I+G C+ G ++    +  EM       + +T NT
Sbjct: 269 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNT 328

Query: 303 LVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSKAG 362
           L+ G CK G    A+    EM + GL  + +TYT  I++ CK  N+++A+EF D+M   G
Sbjct: 329 LIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRG 388

Query: 363 CFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDEAN 422
             P+   Y TL+ G +Q G +++A  V   M   GF   +V YN LI+  C   K+++A 
Sbjct: 389 LCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 448

Query: 423 ELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVIHA 482
            +L++M+  G+ PD V+Y+T++S F +  +++ A +   +M ++  + P   TY ++I  
Sbjct: 449 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG-IKPDTITYSSLIQG 508

Query: 483 YCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGVKP 542
           +C    T EA  L++EM     +PP+   Y  LI++ C   ++  AL L ++M   GV P
Sbjct: 509 FCEQRRTKEACDLYEEMLRVG-LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLP 568

Query: 543 NTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSV 593
           +  TY+ ++ GL ++    +A  ++ ++  +      +T   L E  S++
Sbjct: 569 DVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNI 603

[Close]

BLAST of Cp4.1LG17g09880.1 vs. NCBI nr
Match: XP_023514674.1 (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1229 bits (3181), Expect = 0.0
Identity = 615/615 (100.00%), Postives = 615/615 (100.00%), Query Frame = 0


Query: 1   MAHSTAQNAVNLLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60
           MAHSTAQNAVNLLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN
Sbjct: 1   MAHSTAQNAVNLLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60

Query: 61  VLDEMLLPDSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120
           VLDEMLLPDSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL
Sbjct: 61  VLDEMLLPDSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120

Query: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180
           TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD
Sbjct: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180

Query: 181 MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV 240
           MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV
Sbjct: 181 MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV 240

Query: 241 GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITL 300
           GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITL
Sbjct: 241 GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITL 300

Query: 301 NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK 360
           NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK
Sbjct: 301 NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK 360

Query: 361 AGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDE 420
           AGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDE
Sbjct: 361 AGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDE 420

Query: 421 ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVI 480
           ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVI
Sbjct: 421 ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVI 480

Query: 481 HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV 540
           HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV
Sbjct: 481 HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV 540

Query: 541 KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600
           KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR
Sbjct: 541 KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600

Query: 601 FTQGYKVSDFAASSS 615
           FTQGYKVSDFAASSS
Sbjct: 601 FTQGYKVSDFAASSS 615

[Close]

BLAST of Cp4.1LG17g09880.1 vs. NCBI nr
Match: XP_022960097.1 (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita moschata] >XP_022960098.1 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 1209 bits (3129), Expect = 0.0
Identity = 605/615 (98.37%), Postives = 609/615 (99.02%), Query Frame = 0


Query: 1   MAHSTAQNAVNLLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60
           MAHST QNAVNLLRRLGRSGMVD+ALAVF+ELDPHKKNTYVRNVIIDLLLKSGRVDNALN
Sbjct: 1   MAHSTTQNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60

Query: 61  VLDEMLLPDSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120
           VLDEMLLP SEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL
Sbjct: 61  VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120

Query: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180
           TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD
Sbjct: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180

Query: 181 MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV 240
           MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV
Sbjct: 181 MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV 240

Query: 241 GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITL 300
           GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIE AHALY+EMVNEQVVPNVITL
Sbjct: 241 GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIETAHALYDEMVNEQVVPNVITL 300

Query: 301 NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK 360
           NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK
Sbjct: 301 NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK 360

Query: 361 AGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDE 420
           AGCFPDAIVYYTLICGLAQAGRLDDATSVA RMKAAGFRLDLVCYNLLISEFCKKNKLDE
Sbjct: 361 AGCFPDAIVYYTLICGLAQAGRLDDATSVALRMKAAGFRLDLVCYNLLISEFCKKNKLDE 420

Query: 421 ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVI 480
           ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELA KFMEKMTKEACLLPSVFTYGAVI
Sbjct: 421 ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELALKFMEKMTKEACLLPSVFTYGAVI 480

Query: 481 HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV 540
           HAYCL NNTDEAMKLFKEM+ATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV
Sbjct: 481 HAYCLTNNTDEAMKLFKEMTATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV 540

Query: 541 KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600
           KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR
Sbjct: 541 KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600

Query: 601 FTQGYKVSDFAASSS 615
           FTQGYKVSDFAASSS
Sbjct: 601 FTQGYKVSDFAASSS 615

[Close]

BLAST of Cp4.1LG17g09880.1 vs. NCBI nr
Match: KAG7025273.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1208 bits (3126), Expect = 0.0
Identity = 607/615 (98.70%), Postives = 610/615 (99.19%), Query Frame = 0


Query: 1   MAHSTAQNAVNLLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60
           MAHSTAQNAVNLLRRLGRSGMVD+ALAVF+ELDPHKKNTYVRNVIIDLLLKSGRVDNALN
Sbjct: 1   MAHSTAQNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60

Query: 61  VLDEMLLPDSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120
           VLDEMLLP SEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL
Sbjct: 61  VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120

Query: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180
           TQLISKLCRSRNIDLAWSVLDDLMT NGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD
Sbjct: 121 TQLISKLCRSRNIDLAWSVLDDLMTRNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180

Query: 181 MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV 240
           MNVQPNVITFGILINHMCK RMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV
Sbjct: 181 MNVQPNVITFGILINHMCKSRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV 240

Query: 241 GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITL 300
           GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIE AHALY+EMVNEQVVPNVITL
Sbjct: 241 GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIETAHALYDEMVNEQVVPNVITL 300

Query: 301 NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK 360
           NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK
Sbjct: 301 NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK 360

Query: 361 AGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDE 420
           AGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDE
Sbjct: 361 AGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDE 420

Query: 421 ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVI 480
           ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELA KFMEKMTKEACLLPSVFTYGAVI
Sbjct: 421 ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELALKFMEKMTKEACLLPSVFTYGAVI 480

Query: 481 HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV 540
           HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV
Sbjct: 481 HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV 540

Query: 541 KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600
           KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR
Sbjct: 541 KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600

Query: 601 FTQGYKVSDFAASSS 615
           FTQGYKVSDFAASSS
Sbjct: 601 FTQGYKVSDFAASSS 615

[Close]

BLAST of Cp4.1LG17g09880.1 vs. NCBI nr
Match: XP_023004956.1 (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita maxima] >XP_023004958.1 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 1194 bits (3088), Expect = 0.0
Identity = 598/612 (97.71%), Postives = 601/612 (98.20%), Query Frame = 0


Query: 1   MAHSTAQNAVNLLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60
           MAHSTAQNAVNLLRRLGRSGMVD+ALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN
Sbjct: 1   MAHSTAQNAVNLLRRLGRSGMVDEALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60

Query: 61  VLDEMLLPDSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120
           VLDEMLLP SEFRPNDITADIVFTKLLKINGSDWRVKEN+IAGLVAKFGKH VVPNPITL
Sbjct: 61  VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENKIAGLVAKFGKHRVVPNPITL 120

Query: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180
           TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKE EFEKMNLLMRKMKD
Sbjct: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEMEFEKMNLLMRKMKD 180

Query: 181 MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV 240
           MNVQPNVITF ILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV
Sbjct: 181 MNVQPNVITFSILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV 240

Query: 241 GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITL 300
           GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAG IE AHALYNEMVNEQVVPNVITL
Sbjct: 241 GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGTIETAHALYNEMVNEQVVPNVITL 300

Query: 301 NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK 360
           NTLVDGMCKHGRISSAVEFF EMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK
Sbjct: 301 NTLVDGMCKHGRISSAVEFFMEMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK 360

Query: 361 AGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDE 420
           AGCFPDAIVYY LI GLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDE
Sbjct: 361 AGCFPDAIVYYPLIFGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDE 420

Query: 421 ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVI 480
           ANELLDEMEVVGIKPD VTYNTLISYFSKMGNLELA KFMEKMTKEACLLPSVFTYGAVI
Sbjct: 421 ANELLDEMEVVGIKPDIVTYNTLISYFSKMGNLELALKFMEKMTKEACLLPSVFTYGAVI 480

Query: 481 HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV 540
           HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV
Sbjct: 481 HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV 540

Query: 541 KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600
           KPNTTTYNAILKGLKEKKW+EKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR
Sbjct: 541 KPNTTTYNAILKGLKEKKWMEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600

Query: 601 FTQGYKVSDFAA 612
           FTQGYKVSDFAA
Sbjct: 601 FTQGYKVSDFAA 612

[Close]

BLAST of Cp4.1LG17g09880.1 vs. NCBI nr
Match: KAG6592866.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1149 bits (2971), Expect = 0.0
Identity = 581/615 (94.47%), Postives = 584/615 (94.96%), Query Frame = 0


Query: 1   MAHSTAQNAVNLLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60
           MAHSTAQNAVNLLRRLGRSGMVD+ALAVF+ELDPHKKNTYVRNVIIDLLLKSGRVDNALN
Sbjct: 1   MAHSTAQNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60

Query: 61  VLDEMLLPDSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120
           VLDEMLLP SEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL
Sbjct: 61  VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120

Query: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180
           TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD
Sbjct: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180

Query: 181 MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV 240
           MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV
Sbjct: 181 MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV 240

Query: 241 GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITL 300
           GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIE AHALY+EMVNEQVVPNVITL
Sbjct: 241 GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIETAHALYDEMVNEQVVPNVITL 300

Query: 301 NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK 360
           NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK
Sbjct: 301 NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK 360

Query: 361 AGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDE 420
           AGCFPDAIVYYTLICGLAQAG                            SEFCKKNKLDE
Sbjct: 361 AGCFPDAIVYYTLICGLAQAG----------------------------SEFCKKNKLDE 420

Query: 421 ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVI 480
           ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELA KFMEKMTKEACLLPSVFTYGAVI
Sbjct: 421 ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELALKFMEKMTKEACLLPSVFTYGAVI 480

Query: 481 HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV 540
           HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV
Sbjct: 481 HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV 540

Query: 541 KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600
           KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR
Sbjct: 541 KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 587

Query: 601 FTQGYKVSDFAASSS 615
           FTQGYKVSDFAASSS
Sbjct: 601 FTQGYKVSDFAASSS 587

[Close]

BLAST of Cp4.1LG17g09880.1 vs. ExPASy TrEMBL
Match: A0A6J1H7V3 (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111460949 PE=4 SV=1)

HSP 1 Score: 1209 bits (3129), Expect = 0.0
Identity = 605/615 (98.37%), Postives = 609/615 (99.02%), Query Frame = 0


Query: 1   MAHSTAQNAVNLLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60
           MAHST QNAVNLLRRLGRSGMVD+ALAVF+ELDPHKKNTYVRNVIIDLLLKSGRVDNALN
Sbjct: 1   MAHSTTQNAVNLLRRLGRSGMVDEALAVFTELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60

Query: 61  VLDEMLLPDSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120
           VLDEMLLP SEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL
Sbjct: 61  VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120

Query: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180
           TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD
Sbjct: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180

Query: 181 MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV 240
           MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV
Sbjct: 181 MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV 240

Query: 241 GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITL 300
           GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIE AHALY+EMVNEQVVPNVITL
Sbjct: 241 GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIETAHALYDEMVNEQVVPNVITL 300

Query: 301 NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK 360
           NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK
Sbjct: 301 NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK 360

Query: 361 AGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDE 420
           AGCFPDAIVYYTLICGLAQAGRLDDATSVA RMKAAGFRLDLVCYNLLISEFCKKNKLDE
Sbjct: 361 AGCFPDAIVYYTLICGLAQAGRLDDATSVALRMKAAGFRLDLVCYNLLISEFCKKNKLDE 420

Query: 421 ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVI 480
           ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELA KFMEKMTKEACLLPSVFTYGAVI
Sbjct: 421 ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELALKFMEKMTKEACLLPSVFTYGAVI 480

Query: 481 HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV 540
           HAYCL NNTDEAMKLFKEM+ATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV
Sbjct: 481 HAYCLTNNTDEAMKLFKEMTATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV 540

Query: 541 KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600
           KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR
Sbjct: 541 KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600

Query: 601 FTQGYKVSDFAASSS 615
           FTQGYKVSDFAASSS
Sbjct: 601 FTQGYKVSDFAASSS 615

[Close]

BLAST of Cp4.1LG17g09880.1 vs. ExPASy TrEMBL
Match: A0A6J1KTL0 (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111498105 PE=4 SV=1)

HSP 1 Score: 1194 bits (3088), Expect = 0.0
Identity = 598/612 (97.71%), Postives = 601/612 (98.20%), Query Frame = 0


Query: 1   MAHSTAQNAVNLLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60
           MAHSTAQNAVNLLRRLGRSGMVD+ALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN
Sbjct: 1   MAHSTAQNAVNLLRRLGRSGMVDEALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60

Query: 61  VLDEMLLPDSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120
           VLDEMLLP SEFRPNDITADIVFTKLLKINGSDWRVKEN+IAGLVAKFGKH VVPNPITL
Sbjct: 61  VLDEMLLPGSEFRPNDITADIVFTKLLKINGSDWRVKENKIAGLVAKFGKHRVVPNPITL 120

Query: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180
           TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKE EFEKMNLLMRKMKD
Sbjct: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEMEFEKMNLLMRKMKD 180

Query: 181 MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV 240
           MNVQPNVITF ILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV
Sbjct: 181 MNVQPNVITFSILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKV 240

Query: 241 GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITL 300
           GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAG IE AHALYNEMVNEQVVPNVITL
Sbjct: 241 GRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGTIETAHALYNEMVNEQVVPNVITL 300

Query: 301 NTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK 360
           NTLVDGMCKHGRISSAVEFF EMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK
Sbjct: 301 NTLVDGMCKHGRISSAVEFFMEMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSK 360

Query: 361 AGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDE 420
           AGCFPDAIVYY LI GLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDE
Sbjct: 361 AGCFPDAIVYYPLIFGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDE 420

Query: 421 ANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVI 480
           ANELLDEMEVVGIKPD VTYNTLISYFSKMGNLELA KFMEKMTKEACLLPSVFTYGAVI
Sbjct: 421 ANELLDEMEVVGIKPDIVTYNTLISYFSKMGNLELALKFMEKMTKEACLLPSVFTYGAVI 480

Query: 481 HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV 540
           HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV
Sbjct: 481 HAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGV 540

Query: 541 KPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600
           KPNTTTYNAILKGLKEKKW+EKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR
Sbjct: 541 KPNTTTYNAILKGLKEKKWMEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKR 600

Query: 601 FTQGYKVSDFAA 612
           FTQGYKVSDFAA
Sbjct: 601 FTQGYKVSDFAA 612

[Close]

BLAST of Cp4.1LG17g09880.1 vs. ExPASy TrEMBL
Match: A0A6J1D191 (pentatricopeptide repeat-containing protein At5g28460 OS=Momordica charantia OX=3673 GN=LOC111016427 PE=4 SV=1)

HSP 1 Score: 1031 bits (2665), Expect = 0.0
Identity = 507/600 (84.50%), Postives = 553/600 (92.17%), Query Frame = 0


Query: 9   AVNLLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLP 68
           AV LLRRLGR+GM D+ALAVFSELD H KNTYVRNVIIDLLLK+GRVD+A+ VLDEMLLP
Sbjct: 161 AVLLLRRLGRAGMADEALAVFSELDSHTKNTYVRNVIIDLLLKTGRVDSAMKVLDEMLLP 220

Query: 69  DSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLC 128
            SEFRPNDITADIVFTKLLK+NG + RV+E+EIAGLVAKFGKHHV PN ITLTQLIS+LC
Sbjct: 221 GSEFRPNDITADIVFTKLLKVNGWEGRVREDEIAGLVAKFGKHHVFPNAITLTQLISRLC 280

Query: 129 RSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVI 188
           RSRN DLAW+VLDD+M  NGLKD APCNALLTGLGKEREFEKMNLLMR+MKDM++QPNVI
Sbjct: 281 RSRNTDLAWNVLDDVMKLNGLKDVAPCNALLTGLGKEREFEKMNLLMRRMKDMDIQPNVI 340

Query: 189 TFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAVAPDAITYNTLIDGLCKVGRQEEGLR 248
           TFGILINH+CKFR IDDALEVFE+MKGEKE AK VAPDAITYNTLIDGLCKVGRQEEG  
Sbjct: 341 TFGILINHLCKFRRIDDALEVFERMKGEKE-AKVVAPDAITYNTLIDGLCKVGRQEEGSS 400

Query: 249 LLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITLNTLVDGMC 308
           L+  MRSDGC PNTVTYNCLIDGYCK+G IE AH L+N+M NEQVVPNVITLNTLVDGMC
Sbjct: 401 LMRMMRSDGCVPNTVTYNCLIDGYCKSGEIEKAHELFNQMANEQVVPNVITLNTLVDGMC 460

Query: 309 KHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSKAGCFPDAI 368
           KHGRISSAVEF REMQQKGLKGNSVTYTVFINAFCK NNIDKA+EFFDEM KAGCFPD+I
Sbjct: 461 KHGRISSAVEFLREMQQKGLKGNSVTYTVFINAFCKXNNIDKAMEFFDEMFKAGCFPDSI 520

Query: 369 VYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDEANELLDEM 428
           VYYTLICGLAQAGRLDDA+ V S++K AGFRLDLVC+N+LISEFCK+NKLD+ANELL+EM
Sbjct: 521 VYYTLICGLAQAGRLDDASFVMSKLKEAGFRLDLVCFNILISEFCKRNKLDKANELLNEM 580

Query: 429 EVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVIHAYCLNNN 488
           E+VG+KPDSVTYNTLISYFS+ GN +LA KFM++MTK   LLP+VFTYGA+IHAYCLNNN
Sbjct: 581 ELVGVKPDSVTYNTLISYFSRTGNFKLAHKFMKRMTKHEGLLPTVFTYGALIHAYCLNNN 640

Query: 489 TDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGVKPNTTTYN 548
           TDEAMKLFKEMSA SKVPPNTVIYNILIDSLCK+NEV+SAL+LFDDM V GVKPNTTTYN
Sbjct: 641 TDEAMKLFKEMSAASKVPPNTVIYNILIDSLCKKNEVNSALSLFDDMKVRGVKPNTTTYN 700

Query: 549 AILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKRFTQGYKVS 608
           A+ K L EK WL+KA E+MDRMVEQACNADYITMEILTEWLSSVGET KLK+FTQGYKVS
Sbjct: 701 AVFKALWEKNWLDKAFELMDRMVEQACNADYITMEILTEWLSSVGETTKLKKFTQGYKVS 759

[Close]

BLAST of Cp4.1LG17g09880.1 vs. ExPASy TrEMBL
Match: A0A1S3BGI7 (pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103489753 PE=4 SV=1)

HSP 1 Score: 952 bits (2460), Expect = 0.0
Identity = 471/613 (76.84%), Postives = 538/613 (87.77%), Query Frame = 0


Query: 1   MAHSTAQNAVNLLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60
           M+ STAQ+AV+LLR LGR GMVD+ALA FS LD H KNT VRN II+LLLKSGRVDNALN
Sbjct: 1   MSLSTAQSAVHLLRHLGRVGMVDEALAAFSTLDSHAKNTNVRNEIINLLLKSGRVDNALN 60

Query: 61  VLDEMLLPDSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120
           VL EMLLP+SEFRPND TA IVF K+LKI+GS+ R KE+EIAGLV+KFGK+++ P+ I L
Sbjct: 61  VLYEMLLPESEFRPNDKTAGIVFNKMLKIDGSEGRAKEDEIAGLVSKFGKYNIFPDTIAL 120

Query: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180
           TQLISKLCRS N +LAW++LD++M  NGLKDAAPCNALLTGLGK REF KMNLLMRKMKD
Sbjct: 121 TQLISKLCRSGNTNLAWNILDNMMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMKD 180

Query: 181 MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAV-APDAITYNTLIDGLCK 240
           MN+QP VITFGILIN++CKFR IDDALEVFEKMKGEKEEA+ V APD I YNTLIDGLCK
Sbjct: 181 MNIQPTVITFGILINYLCKFRRIDDALEVFEKMKGEKEEAEVVVAPDTIMYNTLIDGLCK 240

Query: 241 VGRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVIT 300
           VGRQEEGLRL+GTMRS  C P T TYNCLI+GYC+AG IE A+ L++EMV+EQ+ PNVIT
Sbjct: 241 VGRQEEGLRLMGTMRSGQCAPTTATYNCLINGYCRAGEIEVANKLFSEMVSEQIEPNVIT 300

Query: 301 LNTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMS 360
           LNTLVDGMCKH RIS+AV+FFR+MQQKGLKGN+VTYTVFINAFC VNN++KA+EF DEMS
Sbjct: 301 LNTLVDGMCKHNRISTAVKFFRDMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMS 360

Query: 361 KAGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLD 420
           K GCFPDA+VYYTLICGLA+AGRLDD++SV S++K AGF LD VCYN+LISEFCKKNKLD
Sbjct: 361 KDGCFPDAVVYYTLICGLARAGRLDDSSSVVSKLKEAGFFLDRVCYNVLISEFCKKNKLD 420

Query: 421 EANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAV 480
            A E L++ME+ G+KPDSVTYNTLISYFSK+GN +LA KFM+KMT+E  L P+VFTYGA+
Sbjct: 421 RAQEWLNQMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEDGLSPTVFTYGAL 480

Query: 481 IHAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNG 540
           IHAYCLNNN DEA+KLFKEM+  SKVPPNTVIYNILIDSLCK+ EV+ AL+L DDM   G
Sbjct: 481 IHAYCLNNNIDEAIKLFKEMNVASKVPPNTVIYNILIDSLCKQTEVNFALSLLDDMKFRG 540

Query: 541 VKPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLK 600
           V PNTTTYN+I K L+E  WL+KA ++MDRMVEQACNADYITMEILTEWLSSVGET KLK
Sbjct: 541 VMPNTTTYNSIFKALRENNWLDKAFKLMDRMVEQACNADYITMEILTEWLSSVGETTKLK 600

Query: 601 RFTQGYKVSDFAA 612
           +FTQG  VSD AA
Sbjct: 601 KFTQGCMVSDSAA 613

[Close]

BLAST of Cp4.1LG17g09880.1 vs. ExPASy TrEMBL
Match: A0A5D3DT18 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00300 PE=4 SV=1)

HSP 1 Score: 952 bits (2460), Expect = 0.0
Identity = 471/613 (76.84%), Postives = 538/613 (87.77%), Query Frame = 0


Query: 1   MAHSTAQNAVNLLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALN 60
           M+ STAQ+AV+LLR LGR GMVD+ALA FS LD H KNT VRN II+LLLKSGRVDNALN
Sbjct: 1   MSLSTAQSAVHLLRHLGRVGMVDEALAAFSTLDSHAKNTNVRNEIINLLLKSGRVDNALN 60

Query: 61  VLDEMLLPDSEFRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITL 120
           VL EMLLP+SEFRPND TA IVF K+LKI+GS+ R KE+EIAGLV+KFGK+++ P+ I L
Sbjct: 61  VLYEMLLPESEFRPNDKTAGIVFNKMLKIDGSEGRAKEDEIAGLVSKFGKYNIFPDTIAL 120

Query: 121 TQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKD 180
           TQLISKLCRS N +LAW++LD++M  NGLKDAAPCNALLTGLGK REF KMNLLMRKMKD
Sbjct: 121 TQLISKLCRSGNTNLAWNILDNMMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMKD 180

Query: 181 MNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKAV-APDAITYNTLIDGLCK 240
           MN+QP VITFGILIN++CKFR IDDALEVFEKMKGEKEEA+ V APD I YNTLIDGLCK
Sbjct: 181 MNIQPTVITFGILINYLCKFRRIDDALEVFEKMKGEKEEAEVVVAPDTIMYNTLIDGLCK 240

Query: 241 VGRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVIT 300
           VGRQEEGLRL+GTMRS  C P T TYNCLI+GYC+AG IE A+ L++EMV+EQ+ PNVIT
Sbjct: 241 VGRQEEGLRLMGTMRSGQCAPTTATYNCLINGYCRAGEIEVANKLFSEMVSEQIEPNVIT 300

Query: 301 LNTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMS 360
           LNTLVDGMCKH RIS+AV+FFR+MQQKGLKGN+VTYTVFINAFC VNN++KA+EF DEMS
Sbjct: 301 LNTLVDGMCKHNRISTAVKFFRDMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMS 360

Query: 361 KAGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLD 420
           K GCFPDA+VYYTLICGLA+AGRLDD++SV S++K AGF LD VCYN+LISEFCKKNKLD
Sbjct: 361 KDGCFPDAVVYYTLICGLARAGRLDDSSSVVSKLKEAGFFLDRVCYNVLISEFCKKNKLD 420

Query: 421 EANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAV 480
            A E L++ME+ G+KPDSVTYNTLISYFSK+GN +LA KFM+KMT+E  L P+VFTYGA+
Sbjct: 421 RAQEWLNQMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEDGLSPTVFTYGAL 480

Query: 481 IHAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNG 540
           IHAYCLNNN DEA+KLFKEM+  SKVPPNTVIYNILIDSLCK+ EV+ AL+L DDM   G
Sbjct: 481 IHAYCLNNNIDEAIKLFKEMNVASKVPPNTVIYNILIDSLCKQTEVNFALSLLDDMKFRG 540

Query: 541 VKPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLK 600
           V PNTTTYN+I K L+E  WL+KA ++MDRMVEQACNADYITMEILTEWLSSVGET KLK
Sbjct: 541 VMPNTTTYNSIFKALRENNWLDKAFKLMDRMVEQACNADYITMEILTEWLSSVGETTKLK 600

Query: 601 RFTQGYKVSDFAA 612
           +FTQG  VSD AA
Sbjct: 601 KFTQGCMVSDSAA 613

[Close]

BLAST of Cp4.1LG17g09880.1 vs. TAIR 10
Match: AT3G61520.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 567.4 bits (1461), Expect = 1.4e-161
Identity = 291/599 (48.58%), Postives = 406/599 (67.78%), Query Frame = 0


Query: 12  LLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLPDSE 71
           L+R  GR GMV++++ V+  LD + KN+ VRNV++D+LL++G VD+A  VLDEML  +S 
Sbjct: 158 LIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESV 217

Query: 72  FRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLCRSR 131
           F PN ITADIV  ++ K       + E +I  L+++F  H V PN + LT+ IS LC++ 
Sbjct: 218 FPPNRITADIVLHEVWK----GRLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNA 277

Query: 132 NIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVITFG 191
             + AW +L DLM      +A P NALL+ LG+  +  +MN L+ KM ++ ++P+V+T G
Sbjct: 278 RANAAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLG 337

Query: 192 ILINHMCKFRMIDDALEVFEKMKGEK-EEAKAVAPDAITYNTLIDGLCKVGRQEEGLRLL 251
           ILIN +CK R +D+ALEVFEKM+G++ ++   +  D+I +NTLIDGLCKVGR +E   LL
Sbjct: 338 ILINTLCKSRRVDEALEVFEKMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELL 397

Query: 252 GTMR-SDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITLNTLVDGMCK 311
             M+  + C PN VTYNCLIDGYC+AG +E A  + + M  +++ PNV+T+NT+V GMC+
Sbjct: 398 VRMKLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCR 457

Query: 312 HGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSKAGCFPDAIV 371
           H  ++ AV FF +M+++G+KGN VTY   I+A C V+N++KA+ ++++M +AGC PDA +
Sbjct: 458 HHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKI 517

Query: 372 YYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDEANELLDEME 431
           YY LI GL Q  R  DA  V  ++K  GF LDL+ YN+LI  FC KN  ++  E+L +ME
Sbjct: 518 YYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDME 577

Query: 432 VVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVIHAYCLNNNT 491
             G KPDS+TYNTLIS+F K  + E   + ME+M +E  L P+V TYGAVI AYC     
Sbjct: 578 KEGKKPDSITYNTLISFFGKHKDFESVERMMEQM-REDGLDPTVTTYGAVIDAYCSVGEL 637

Query: 492 DEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGVKPNTTTYNA 551
           DEA+KLFK+M   SKV PNTVIYNILI++  K      AL+L ++M +  V+PN  TYNA
Sbjct: 638 DEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNA 697

Query: 552 ILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKRFTQGYKVS 609
           + K L EK   E  L++MD MVEQ+C  + ITMEIL E LS   E  KL++F QGY V+
Sbjct: 698 LFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKLRKFMQGYSVA 751

[Close]

BLAST of Cp4.1LG17g09880.1 vs. TAIR 10
Match: AT5G28460.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 566.6 bits (1459), Expect = 2.4e-161
Identity = 290/599 (48.41%), Postives = 407/599 (67.95%), Query Frame = 0


Query: 12  LLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLPDSE 71
           L+R  GR GMV++++ V+  LD + KN+ VRNV++D+LL++G VD+A  VLDEML  +S 
Sbjct: 158 LIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESV 217

Query: 72  FRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLCRSR 131
           F PN ITADIV  ++ K    +  + E +I  L+++F  H V PN + LT+ IS LC++ 
Sbjct: 218 FPPNRITADIVLHEVWK----ERLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNA 277

Query: 132 NIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVITFG 191
             + AW +L DLM      +A P NALL+ LG+  +  +MN L+ KM ++ ++P+V+T G
Sbjct: 278 RANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLG 337

Query: 192 ILINHMCKFRMIDDALEVFEKMKGEK-EEAKAVAPDAITYNTLIDGLCKVGRQEEGLRLL 251
           ILIN +CK R +D+ALEVFE+M+G++ ++   +  D+I +NTLIDGLCKVGR +E   LL
Sbjct: 338 ILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELL 397

Query: 252 GTMR-SDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITLNTLVDGMCK 311
             M+  + C PN VTYNCLIDGYC+AG +E A  + + M  +++ PNV+T+NT+V GMC+
Sbjct: 398 VRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCR 457

Query: 312 HGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSKAGCFPDAIV 371
           H  ++ AV FF +M+++G+KGN VTY   I+A C V+N++KA+ ++++M +AGC PDA +
Sbjct: 458 HHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKI 517

Query: 372 YYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDEANELLDEME 431
           YY LI GL Q  R  DA  V  ++K  GF LDL+ YN+LI  FC KN  ++  E+L +ME
Sbjct: 518 YYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDME 577

Query: 432 VVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVIHAYCLNNNT 491
             G KPDS+TYNTLIS+F K  + E   + ME+M +E  L P+V TYGAVI AYC     
Sbjct: 578 KEGKKPDSITYNTLISFFGKHKDFESVERMMEQM-REDGLDPTVTTYGAVIDAYCSVGEL 637

Query: 492 DEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGVKPNTTTYNA 551
           DEA+KLFK+M   SKV PNTVIYNILI++  K      AL+L ++M +  V+PN  TYNA
Sbjct: 638 DEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNA 697

Query: 552 ILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEWLSSVGETAKLKRFTQGYKVS 609
           + K L EK   E  L++MD MVEQ+C  + ITMEIL E LS   E  KL++F QGY V+
Sbjct: 698 LFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKLRKFMQGYSVA 751

[Close]

BLAST of Cp4.1LG17g09880.1 vs. TAIR 10
Match: AT5G28370.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 532.7 bits (1371), Expect = 3.9e-151
Identity = 274/579 (47.32%), Postives = 389/579 (67.18%), Query Frame = 0


Query: 12  LLRRLGRSGMVDKALAVFSELDPHKKNTYVRNVIIDLLLKSGRVDNALNVLDEMLLPDSE 71
           L+R  GR GMV++++ V+  LD + KN+ VRNV++D+LL++G VD+A  VLDEML  +S 
Sbjct: 158 LIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESV 217

Query: 72  FRPNDITADIVFTKLLKINGSDWRVKENEIAGLVAKFGKHHVVPNPITLTQLISKLCRSR 131
           F PN ITADIV  ++ K    +  + E +I  L+++F  H V PN + LT+ IS LC++ 
Sbjct: 218 FPPNRITADIVLHEVWK----ERLLTEEKIIALISRFSSHGVSPNSVWLTRFISSLCKNA 277

Query: 132 NIDLAWSVLDDLMTWNGLKDAAPCNALLTGLGKEREFEKMNLLMRKMKDMNVQPNVITFG 191
             + AW +L DLM      +A P NALL+ LG+  +  +MN L+ KM ++ ++P+V+T G
Sbjct: 278 RANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLG 337

Query: 192 ILINHMCKFRMIDDALEVFEKMKGEK-EEAKAVAPDAITYNTLIDGLCKVGRQEEGLRLL 251
           ILIN +CK R +D+ALEVFE+M+G++ ++   +  D+I +NTLIDGLCKVGR +E   LL
Sbjct: 338 ILINTLCKSRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELL 397

Query: 252 GTMR-SDGCKPNTVTYNCLIDGYCKAGAIEPAHALYNEMVNEQVVPNVITLNTLVDGMCK 311
             M+  + C PN VTYNCLIDGYC+AG +E A  + + M  +++ PNV+T+NT+V GMC+
Sbjct: 398 VRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCR 457

Query: 312 HGRISSAVEFFREMQQKGLKGNSVTYTVFINAFCKVNNIDKAIEFFDEMSKAGCFPDAIV 371
           H  ++ AV FF +M+++G+KGN VTY   I+A C V+N++KA+ ++++M +AGC PDA +
Sbjct: 458 HHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKI 517

Query: 372 YYTLICGLAQAGRLDDATSVASRMKAAGFRLDLVCYNLLISEFCKKNKLDEANELLDEME 431
           YY LI GL Q  R  DA  V  ++K  GF LDL+ YN+LI  FC KN  ++  E+L +ME
Sbjct: 518 YYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDME 577

Query: 432 VVGIKPDSVTYNTLISYFSKMGNLELAFKFMEKMTKEACLLPSVFTYGAVIHAYCLNNNT 491
             G KPDS+TYNTLIS+F K  + E   + ME+M +E  L P+V TYGAVI AYC     
Sbjct: 578 KEGKKPDSITYNTLISFFGKHKDFESVERMMEQM-REDGLDPTVTTYGAVIDAYCSVGEL 637

Query: 492 DEAMKLFKEMSATSKVPPNTVIYNILIDSLCKRNEVSSALALFDDMNVNGVKPNTTTYNA 551
           DEA+KLFK+M   SKV PNTVIYNILI++  K      AL+L ++M +  V+PN  TYNA
Sbjct: 638 DEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNA 697

Query: 552 ILKGLKEKKWLEKALEVMDRMVEQACNADYITMEILTEW 589
           + K L EK   E  L++MD MVE   N      +I ++W
Sbjct: 698 LFKCLNEKTQGETLLKLMDEMVEHLVN------QIRSQW 725

[Close]

BLAST of Cp4.1LG17g09880.1 vs. TAIR 10
Match: AT1G12300.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 271.2 bits (692), Expect = 2.1e-72
Identity = 162/491 (32.99%), Postives = 246/491 (50.10%), Query Frame = 0


Query: 103 GLVAKFGKHHVVPNPITLTQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGL 162
           G + K G     PN IT + LI+ LC    +  A  ++D ++      D    N L+ GL
Sbjct: 147 GKIIKLGYE---PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGL 206

Query: 163 ---GKEREFEKMNLLMRKMKDMNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEE 222
              GKE E     LL+ KM +   QPN +T+G ++N MCK      A+E+  KM     E
Sbjct: 207 CLSGKEAE---AMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKM-----E 266

Query: 223 AKAVAPDAITYNTLIDGLCKVGRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIE 282
            + +  DA+ Y+ +IDGLCK G  +    L   M   G   N +TYN LI G+C AG  +
Sbjct: 267 ERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWD 326

Query: 283 PAHALYNEMVNEQVVPNVITLNTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFI 342
               L  +M+  ++ PNV+T + L+D   K G++  A E  +EM  +G+  +++TYT  I
Sbjct: 327 DGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLI 386

Query: 343 NAFCKVNNIDKAIEFFDEMSKAGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFR 402
           + FCK N++DKA +  D M   GC P+   +  LI G  +A R+DD   +  +M   G  
Sbjct: 387 DGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVV 446

Query: 403 LDLVCYNLLISEFCKKNKLDEANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKF 462
            D V YN LI  FC+  KL+ A EL  EM    + P+ VTY  L+      G  E A + 
Sbjct: 447 ADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEI 506

Query: 463 MEKMTKEACLLPSVFTYGAVIHAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSL 522
            EK+ K    L  +  Y  +IH  C  +  D+A  LF  +     V P    YNI+I  L
Sbjct: 507 FEKIEKSKMEL-DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG-VKPGVKTYNIMIGGL 566

Query: 523 CKRNEVSSALALFDDMNVNGVKPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADY 582
           CK+  +S A  LF  M  +G  P+  TYN +++         K++++++ +     + D 
Sbjct: 567 CKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDA 624

Query: 583 ITMEILTEWLS 591
            T++++ + LS
Sbjct: 627 STIKMVIDMLS 624

[Close]

BLAST of Cp4.1LG17g09880.1 vs. TAIR 10
Match: AT1G12775.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 260.4 bits (664), Expect = 3.7e-69
Identity = 153/495 (30.91%), Postives = 243/495 (49.09%), Query Frame = 0


Query: 103 GLVAKFGKHHVVPNPITLTQLISKLCRSRNIDLAWSVLDDLMTWNGLKDAAPCNALLTGL 162
           G + K G     P+ +    L++ LC    +  A  ++D ++           N L+ GL
Sbjct: 147 GKIMKLGYE---PDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGL 206

Query: 163 GKEREFEKMNLLMRKMKDMNVQPNVITFGILINHMCKFRMIDDALEVFEKMKGEKEEAKA 222
               +     +L+ +M +   QPN +T+G ++N MCK      A+E+  KM     E + 
Sbjct: 207 CLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKM-----EERN 266

Query: 223 VAPDAITYNTLIDGLCKVGRQEEGLRLLGTMRSDGCKPNTVTYNCLIDGYCKAGAIEPAH 282
           +  DA+ Y+ +IDGLCK G  +    L   M   G K + +TYN LI G+C AG  +   
Sbjct: 267 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGA 326

Query: 283 ALYNEMVNEQVVPNVITLNTLVDGMCKHGRISSAVEFFREMQQKGLKGNSVTYTVFINAF 342
            L  +M+  ++ PNV+T + L+D   K G++  A +  +EM Q+G+  N++TY   I+ F
Sbjct: 327 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGF 386

Query: 343 CKVNNIDKAIEFFDEMSKAGCFPDAIVYYTLICGLAQAGRLDDATSVASRMKAAGFRLDL 402
           CK N +++AI+  D M   GC PD + +  LI G  +A R+DD   +   M   G   + 
Sbjct: 387 CKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANT 446

Query: 403 VCYNLLISEFCKKNKLDEANELLDEMEVVGIKPDSVTYNTLISYFSKMGNLELAFKFMEK 462
           V YN L+  FC+  KL+ A +L  EM    ++PD V+Y  L+      G LE A +   K
Sbjct: 447 VTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGK 506

Query: 463 MTKEACLLPSVFTYGAVIHAYCLNNNTDEAMKLFKEMSATSKVPPNTVIYNILIDSLCKR 522
           + K    L  +  Y  +IH  C  +  D+A  LF  +     V  +   YNI+I  LC++
Sbjct: 507 IEKSKMEL-DIGIYMIIIHGMCNASKVDDAWDLFCSLPLKG-VKLDARAYNIMISELCRK 566

Query: 523 NEVSSALALFDDMNVNGVKPNTTTYNAILKGLKEKKWLEKALEVMDRMVEQACNADYITM 582
           + +S A  LF  M   G  P+  TYN +++          A E+++ M      AD  T+
Sbjct: 567 DSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTV 626

Query: 583 EILTEWLSSVGETAK 598
           +++   LSS GE  K
Sbjct: 627 KMVINMLSS-GELDK 630

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g09880.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M316	2.0e-160	48.58	Pentatricopeptide repeat-containing protein At3g61520, mitochondrial OS=Arabidop...	[more]
Q9LKU8	3.4e-160	48.41	Pentatricopeptide repeat-containing protein At5g28460 OS=Arabidopsis thaliana OX...	[more]
Q0WKV3	2.9e-71	32.99	Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidop...	[more]
Q9LPX2	5.2e-68	30.91	Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidop...	[more]
Q9FIX3	8.9e-68	30.64	Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cp4.1LG17g09880.1 vs. NCBI nr


Match Name	Identity	Description
XP_023514674.1	100.00	pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucur...	[more]
XP_022960097.1	98.37	pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucur...	[more]
KAG7025273.1	98.70	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_023004956.1	97.71	pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucur...	[more]
KAG6592866.1	94.47	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of Cp4.1LG17g09880.1 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A6J1H7V3	98.37	pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like OS=Cuc...	[more]
A0A6J1KTL0	97.71	pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like OS=Cuc...	[more]
A0A6J1D191	84.50	pentatricopeptide repeat-containing protein At5g28460 OS=Momordica charantia OX=...	[more]
A0A1S3BGI7	76.84	pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like OS=Cuc...	[more]
A0A5D3DT18	76.84	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Cp4.1LG17g09880.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61520.1	1.4e-161	48.58	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G28460.1	2.4e-161	48.41	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G28370.1	3.9e-151	47.32	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G12300.1	2.1e-72	32.99	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G12775.1	3.7e-69	30.91	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 203..223
None	No IPR available	PANTHER	PTHR47942:SF64	F21B23.6 PROTEIN	coord: 7..608
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 7..608
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 314..533
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 223..254 e-value: 7.6E-10 score: 38.4 coord: 468..500 e-value: 2.0E-10 score: 40.2
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 119..143 e-value: 1.2 score: 9.6 coord: 43..66 e-value: 0.017 score: 15.3 coord: 12..32 e-value: 0.65 score: 10.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 438..471 e-value: 2.4E-6 score: 25.4 coord: 188..217 e-value: 1.3E-5 score: 23.0 coord: 474..508 e-value: 8.5E-8 score: 29.9 coord: 155..187 e-value: 2.5E-5 score: 22.2 coord: 403..437 e-value: 1.5E-7 score: 29.1 coord: 228..262 e-value: 1.3E-9 score: 35.6 coord: 263..297 e-value: 4.8E-8 score: 30.7 coord: 546..575 e-value: 6.4E-5 score: 20.9 coord: 333..367 e-value: 2.4E-11 score: 41.1 coord: 369..401 e-value: 1.4E-5 score: 22.9 coord: 510..544 e-value: 4.4E-9 score: 34.0 coord: 298..331 e-value: 3.0E-8 score: 31.3
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 260..309 e-value: 7.3E-18 score: 64.5 coord: 401..444 e-value: 6.8E-14 score: 51.8 coord: 155..199 e-value: 3.8E-10 score: 39.8 coord: 507..554 e-value: 1.4E-16 score: 60.4 coord: 331..378 e-value: 6.1E-13 score: 48.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 151..185 score: 9.613118
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 261..295 score: 13.011121
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 366..400 score: 10.336563
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 543..577 score: 10.13926
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 226..260 score: 13.920909
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 508..542 score: 12.276713
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 401..435 score: 12.682281
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 331..365 score: 13.307076
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 436..470 score: 11.081932
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 186..220 score: 10.062531
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 472..506 score: 11.421732
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 296..330 score: 12.375365
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 220..325 e-value: 1.9E-37 score: 131.3 coord: 97..219 e-value: 2.8E-22 score: 81.5 coord: 467..614 e-value: 1.1E-35 score: 125.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 395..466 e-value: 2.7E-20 score: 74.7 coord: 326..394 e-value: 1.3E-19 score: 72.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 2..96 e-value: 1.8E-10 score: 42.5

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG17g09880	Cp4.1LG17g09880	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g09880.1:exon:001	Cp4.1LG17g09880.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g09880.1:cds:001	Cp4.1LG17g09880.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g09880.1	Cp4.1LG17g09880.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding