Cp4.1LG10g05690.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g05690.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG10: 812487 .. 816701 (+)
Sequence length	1912
RNA-Seq Expression	Cp4.1LG10g05690.1
Synteny	Cp4.1LG10g05690.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGACTTCAACTGAAGCTCTGGTAAAATCTCTCCTTAAGAATCCCAGTGCCATCAAATCCAGATCACAGGCTCAACAACTCCATGCCCAGGTGCTCAAATTTCAAGCTTCATCTCTTTCCAACCTTTCCCTTGTTCTATCACTCTACTCCCACAGTAATCTTCTCGATGATTCACTCCGTCTTTTCAACACCCTTCACTTCCCTCCGCCTCTCGCCTGGAAATCTATCATCCGTTGCTACACTTCTCATGGCCTTCCTCATCAGTCCTTGGCTTCTTTTATTGGAATGCTGGCCTCTGGGATATACCCAGATCACAATGTCTTCCCTTCTGTTCTAAAATCTTGTGCATTGCTTATGGATTTGCGTTTGGGGGAGTCCGTTCATGGGTACGTCTTAAGGGTAGGCTTGGATTTTGATTTGTATACTGGTAATGCGTTGATGAATATGTATTCGAAACTGCGATTTCTGCAGGAGACTGGGAGGCAGAGACTTGGTACCAGCGAAGTGTTCGACGAAATGACTGAAAGAACACTAACTGGTAGAACTTCCTCTGCGTTAGTTGGTATTGTGGGGAGTGACACTGAAGCATTTCATTATGATGTTTCTTGTGGAAGAAGGGAGTTTGAAACACACATTGTTGAAACAGACTGCAAACACAGCAAGAAATTTAGGGACTTGGAAGCCTGCAATCTTGGGCCACAAATCAAGGATAGTTCTCATTCAAAAGGACGCCAAAGTGAGGATACCGTGAGAAAAATCTTTGAGATGATGCCTGAAAGGGATCTTGTCTCATGGAACACCATAATTGCAGGAAATGCTAGGAATGGTCTGTATGAAGAAACTTTAACGATGGTTAGAGGGATGGGTGATGCTAATTTGAAGCCTGATTCCTTCACTCTTTCTAGTGTGCTTCCACTTGTTGCAGAATATGCAGATATCAGTAAAGGAAAAGAGATTCATGGATGGGCCATAAGACAGGGTTTTGATGCAGATGGATATGTTGCAAGCAGCTTAATTGATATGTATGCGAAGTGCACACAAGTATCGGATTCGTGTCGGGTATTTAGTCTCTTGACTAAGCGTGATGGGATTTCATGGAACTCTATCATTGCAGGGTGTGTGCAAAATGGTCTATTTGACGAAGGTCTGAGATTTTTCCACCAAATGTTGATGGCTAAAATCAAGCCCAAGAGCTATTCCTTCTCAAGTATTATGCCGGCTTGCGCACACTTGACAACATTGCATCTGGGTAAGCAGCTCCATGGATACATCATAAGGAATGGCTTCGATGACAACATATTCATTGCAAGTTCGCTAATCGACATGTATGCAAAATGCGGTAACATTAGAACGGCCAGGCAGATTTATGACAGGATGAGATTACGAGACATGGTATCATGGACTGCCATGATTATGGGATATGCTTTGCACGGGCATGCTCTTGATGCTATTGACTTATTTGAACAAATGGAAACAGAAGGAATAAAGCCAAATTATGTGGCCTTCATGTCTGTATTAACTGCTTGTAGCCATGCTGGATTAGTTGATGAAGCTTGGAAGTACTTCAATAGCATGACACAAGATTTCGGGATTGTTCCAGGAGTGGAACACTACGCTGCTGTTTCAGACCTTCTTGGACGAGCTGGAAGGCTGGAAGAAGCTTATGACTTTATCTGTGGGATGCATATGGGACCAACTGGGAGTATATGGTCGACACTGTTGTCTGCTTGTCGAGTCCACAAAAACGTCGACATGGCCGAAAAGGTTGCTAATAGAATTTTCGAAGTCGATCCAGAGAACACGGGAGCTTATGTATTACTAGCAAACATATATTCTGGTGCAAGGAGATGGAAAGAGGCCGCAAAATGGAGAGCCTCATTGAGGCGCACAGGCATTAGAAAGACACCAGCCTGCAGCTGGATTGAAGTTAAAAACAAAGTTCATGCTTTCATGGCTGGAGATGAATCCCATCCATGTTATGAGGAAGTAAGAGAAGCCATGGAAGTCCTAATGGAGCTGATGAAAAAGGAGGGTTATGAGGCAGATACAAGTGAGGTTCATCATGATGTGGAAGAGGAGCAAAAGAAATACTTGCTTTGCCGCCATAGTGAGAGGCTTGCCATTGTGTTCGGTATCATCAACACGCCCGCCGGGACGACAATTCGTGTCACGAAGAACCTCCGCGTGTGTACCGACTGTCACACAGCAACAAAGTTCATTTCAAAGATAGTTGGGCGGGAGATTGTTGTGAGGGATAACAGTCGATTTCACCATTTCAAGAACGGAATGTGTTCCTGTGGAGATTACTGGTGACAGAGGTGGGAGATTTCATTGATATATTTAGTTCTAAATTAATGCAAAAACAAGTTTTAAATTTTTATTTTACTTGGAAAATAATAATAATTTTTATTAAAAAAAGATGCAATATAATATATTTTCAAAATAGAGATATATTAAAAAAATATAATATATTTTAGAAAGTGAAGTGGGCGTTCTTTTGGCCTTCGATGGTTTATAAAGACCTAAATTGCTGCAGCCGTTCGAGAGGGAAATTCATATTCTCCGCCTCGTTGCTTCTATTGCAATTCGCGAGCGAACATGCAGGTACCAACTACACTTGGAACATCGTATTTATTGTCTATCATACTACTTTATTCCGAATTTTAGGTTGTGTTTCGATTTGGTTGGGCAGTAATTAGACAGCCCGGCGACTGAGTCCAATTTGTTTCTTTCGTTTCTATTTCCGCTGATTCAAGCCTAAGGAGATGATTTTATAAGTTCACTTCCTGATCCTGTTCGTATTACTCAACCGTTTCGTTTTGTTTATCGGAGGCCTTCTCTGTTGCGATATTCCTGAATCCTTAATTTATGGGAGATAAGGAATTTTCTGCTTTTCTCACTGGGAATCACTCTCCATTTAGCTCACGAAGGAAAAAATATCTACTTTTTTATTTGGGGTTTGTTTGTTTCTAGTTGCAAATGAGCTCTGCACGAAGCGAGTAACGGTATTATGTTGAGTCTTGAATTACTATTGAGTTGTTAGTGTAATAAGTGGATGTCAGACCTCTTAATCAGTAATCCATCTTTGAAATTTGAGATTGATTGTGGATTCCTGTCACTGCTCGCTGGAGGTTGGTTTAGATGGACACGAGGCGCTAATGTTGGTTTTTGATTTGGATGCAGGCCAGTGATAGATTTAACATAAATTCCCAGCTTGAGCACCTTCAGGCGAAATATGTGGGAACAGGGCATGCGGACTTAAATAGATTGTTAGTTTTGTATTCCTTCTTGAGTGTTGATCTTATTATATTGCTTTGCATATTAGTTTTGATGTCTAAATTCAGATGTTGGTGTGTACAGTGAGTGGGCAGTAAACATTCAGCGAGATAGCTATGCATCTTATGTTGGACATTACCCCATTTTAGCATACTTCGCTATAGCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTCATGCAGGTCAATAACTTCTTCTTTCTTTATGATTATTAACCCTTTAACTTGCCTTCCTCCCATGAACATGAGAGTTTCAAGTCCTATTATATGATTTTCGAGTAATTGCTCCATCCATGTATATGAATTGTTTGTTATCTTCACTTGATCCACTCTGCGTGCTGTAATCTAAACTGGGTTTGTGCTGCTTCTGTGTCTCGAAATGTGGGGTTAAACCCATCATGTTTGTAACTAGCATTCCATTCTTAACGAGGGATAGCAAAACTTCATCATATATCCTCCTGGATATCATTTTGGACATAGTTAGATACCTAATGGGTTGTTCTTCTTTTTTCATTTCCTTTTTTGGCAGAAAATGCTATTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAGATTGCTATTATTAAGTAATTGAAGTTGTTGTTAAGATTGCAGTAACCGTAAGTCATTGTAGGGTTGATGAATTTCTTGTTTATGAACCAACGATGTTAAGATTTTCTTGGATATTGAAATTTTCTGTATGATTTCAATATCTGAGTATTCTAATAGACTTCTAGATTTTAAAATGTGTCTGGAACGAGAAGGCCAAACTCGAAAGGAATTTGCTTCTTTTTCTATTTTTTCTTTCATTTGAATTTCTAAATCTCAGGTAAAGGCGTTAAAGGCGTTGGTGCTCTCGTTTTCTTGCCAACTTTGATCATATTTGGCTTTAGTACTTTCTATTCT

mRNA sequence

ATGAGGACTTCAACTGAAGCTCTGGTAAAATCTCTCCTTAAGAATCCCAGTGCCATCAAATCCAGATCACAGGCTCAACAACTCCATGCCCAGGTGCTCAAATTTCAAGCTTCATCTCTTTCCAACCTTTCCCTTGTTCTATCACTCTACTCCCACAGTAATCTTCTCGATGATTCACTCCGTCTTTTCAACACCCTTCACTTCCCTCCGCCTCTCGCCTGGAAATCTATCATCCGTTGCTACACTTCTCATGGCCTTCCTCATCAGTCCTTGGCTTCTTTTATTGGAATGCTGGCCTCTGGGATATACCCAGATCACAATGTCTTCCCTTCTGTTCTAAAATCTTGTGCATTGCTTATGGATTTGCGTTTGGGGGAGTCCGTTCATGGGTACGTCTTAAGGGTAGGCTTGGATTTTGATTTGTATACTGGTAATGCGTTGATGAATATGTATTCGAAACTGCGATTTCTGCAGGAGACTGGGAGGCAGAGACTTGGTACCAGCGAAGTGTTCGACGAAATGACTGAAAGAACACTAACTGGTAGAACTTCCTCTGCGTTAGTTGGTATTGTGGGGAGTGACACTGAAGCATTTCATTATGATGTTTCTTGTGGAAGAAGGGAGTTTGAAACACACATTGTTGAAACAGACTGCAAACACAGCAAGAAATTTAGGGACTTGGAAGCCTGCAATCTTGGGCCACAAATCAAGGATAGTTCTCATTCAAAAGGACGCCAAAGTGAGGATACCGTGAGAAAAATCTTTGAGATGATGCCTGAAAGGGATCTTGTCTCATGGAACACCATAATTGCAGGAAATGCTAGGAATGGTCTGTATGAAGAAACTTTAACGATGGTTAGAGGGATGGGTGATGCTAATTTGAAGCCTGATTCCTTCACTCTTTCTAGTGTGCTTCCACTTGTTGCAGAATATGCAGATATCAGTAAAGGAAAAGAGATTCATGGATGGGCCATAAGACAGGGTTTTGATGCAGATGGATATGTTGCAAGCAGCTTAATTGATATGTATGCGAAGTGCACACAAGTATCGGATTCGTGTCGGGTATTTAGTCTCTTGACTAAGCGTGATGGGATTTCATGGAACTCTATCATTGCAGGGTGTGTGCAAAATGGTCTATTTGACGAAGGTCTGAGATTTTTCCACCAAATGTTGATGGCTAAAATCAAGCCCAAGAGCTATTCCTTCTCAAGTATTATGCCGGCTTGCGCACACTTGACAACATTGCATCTGGCCGTTCGAGAGGGAAATTCATATTCTCCGCCTCGTTGCTTCTATTGCAATTCGCGAGCGAACATGCAGGCCAGTGATAGATTTAACATAAATTCCCAGCTTGAGCACCTTCAGGCGAAATATGTGGGAACAGGGCATGCGGACTTAAATAGATTTGAGTGGGCAGTAAACATTCAGCGAGATAGCTATGCATCTTATGTTGGACATTACCCCATTTTAGCATACTTCGCTATAGCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTCATGCAGAAAATGCTATTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAGATTGCTATTATTAAGTAATTGAAGTTGTTGTTAAGATTGCAGTAACCGTAAGTCATTGTAGGGTTGATGAATTTCTTGTTTATGAACCAACGATGTTAAGATTTTCTTGGATATTGAAATTTTCTGTATGATTTCAATATCTGAGTATTCTAATAGACTTCTAGATTTTAAAATGTGTCTGGAACGAGAAGGCCAAACTCGAAAGGAATTTGCTTCTTTTTCTATTTTTTCTTTCATTTGAATTTCTAAATCTCAGGTAAAGGCGTTAAAGGCGTTGGTGCTCTCGTTTTCTTGCCAACTTTGATCATATTTGGCTTTAGTACTTTCTATTCT

Coding sequence (CDS)

ATGAGGACTTCAACTGAAGCTCTGGTAAAATCTCTCCTTAAGAATCCCAGTGCCATCAAATCCAGATCACAGGCTCAACAACTCCATGCCCAGGTGCTCAAATTTCAAGCTTCATCTCTTTCCAACCTTTCCCTTGTTCTATCACTCTACTCCCACAGTAATCTTCTCGATGATTCACTCCGTCTTTTCAACACCCTTCACTTCCCTCCGCCTCTCGCCTGGAAATCTATCATCCGTTGCTACACTTCTCATGGCCTTCCTCATCAGTCCTTGGCTTCTTTTATTGGAATGCTGGCCTCTGGGATATACCCAGATCACAATGTCTTCCCTTCTGTTCTAAAATCTTGTGCATTGCTTATGGATTTGCGTTTGGGGGAGTCCGTTCATGGGTACGTCTTAAGGGTAGGCTTGGATTTTGATTTGTATACTGGTAATGCGTTGATGAATATGTATTCGAAACTGCGATTTCTGCAGGAGACTGGGAGGCAGAGACTTGGTACCAGCGAAGTGTTCGACGAAATGACTGAAAGAACACTAACTGGTAGAACTTCCTCTGCGTTAGTTGGTATTGTGGGGAGTGACACTGAAGCATTTCATTATGATGTTTCTTGTGGAAGAAGGGAGTTTGAAACACACATTGTTGAAACAGACTGCAAACACAGCAAGAAATTTAGGGACTTGGAAGCCTGCAATCTTGGGCCACAAATCAAGGATAGTTCTCATTCAAAAGGACGCCAAAGTGAGGATACCGTGAGAAAAATCTTTGAGATGATGCCTGAAAGGGATCTTGTCTCATGGAACACCATAATTGCAGGAAATGCTAGGAATGGTCTGTATGAAGAAACTTTAACGATGGTTAGAGGGATGGGTGATGCTAATTTGAAGCCTGATTCCTTCACTCTTTCTAGTGTGCTTCCACTTGTTGCAGAATATGCAGATATCAGTAAAGGAAAAGAGATTCATGGATGGGCCATAAGACAGGGTTTTGATGCAGATGGATATGTTGCAAGCAGCTTAATTGATATGTATGCGAAGTGCACACAAGTATCGGATTCGTGTCGGGTATTTAGTCTCTTGACTAAGCGTGATGGGATTTCATGGAACTCTATCATTGCAGGGTGTGTGCAAAATGGTCTATTTGACGAAGGTCTGAGATTTTTCCACCAAATGTTGATGGCTAAAATCAAGCCCAAGAGCTATTCCTTCTCAAGTATTATGCCGGCTTGCGCACACTTGACAACATTGCATCTGGCCGTTCGAGAGGGAAATTCATATTCTCCGCCTCGTTGCTTCTATTGCAATTCGCGAGCGAACATGCAGGCCAGTGATAGATTTAACATAAATTCCCAGCTTGAGCACCTTCAGGCGAAATATGTGGGAACAGGGCATGCGGACTTAAATAGATTTGAGTGGGCAGTAAACATTCAGCGAGATAGCTATGCATCTTATGTTGGACATTACCCCATTTTAGCATACTTCGCTATAGCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTCATGCAGAAAATGCTATTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

Protein sequence

MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHSNLLDDSLRLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLMDLRLGESVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLTGRTSSALVGIVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDSSHSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFTLSSVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLLTKRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHLAVREGNSYSPPRCFYCNSRANMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD

Homology

[Close]

BLAST of Cp4.1LG10g05690.1 vs. ExPASy Swiss-Prot
Match: Q9LW63 (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 9.4e-111
Identity = 211/415 (50.84%), Postives = 285/415 (68.67%), Query Frame = 0


Query: 3   TSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHSNLLDDSLRL 62
           +S++AL+K+L+KNP+ IKS+SQA+QLHAQ ++ Q+ S ++ S+V+S+Y++  LL ++L L
Sbjct: 2   SSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLL 61

Query: 63  FNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLMDL 122
           F TL  PP LAWKS+IRC+T   L  ++LASF+ M ASG  PDHNVFPSVLKSC ++MDL
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 123 RLGESVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLTGR 182
           R GESVHG+++R+G+D DLYTGNALMNMY+KL  +      ++    VFDEM +RT    
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGM----GSKISVGNVFDEMPQRT---- 181

Query: 183 TSSALVGIVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDSSHS 242
                                       ++  + D K        E C +   I      
Sbjct: 182 ----------------------------SNSGDEDVK-------AETCIMPFGI------ 241

Query: 243 KGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFTLS 302
                 D+VR++FE+MP +D+VS+NTIIAG A++G+YE+ L MVR MG  +LKPDSFTLS
Sbjct: 242 ------DSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLS 301

Query: 303 SVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLLTKR 362
           SVLP+ +EY D+ KGKEIHG+ IR+G D+D Y+ SSL+DMYAK  ++ DS RVFS L  R
Sbjct: 302 SVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR 361

Query: 363 DGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 418
           DGISWNS++AG VQNG ++E LR F QM+ AK+KP + +FSS++PACAHL TLHL
Sbjct: 362 DGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHL 361

[Close]

BLAST of Cp4.1LG10g05690.1 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.3e-43
Identity = 116/411 (28.22%), Postives = 195/411 (47.45%), Query Frame = 0


Query: 11  SLLKNPSAIKSRSQAQQLHAQVLKFQAS----SLSNLSLVLSLYSHSNLLDDSLRLFNTL 70
           SLL N   ++S    + +HAQ++K        +LS L     L  H   L  ++ +F T+
Sbjct: 38  SLLHNCKTLQS---LRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTI 97

Query: 71  HFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLMDLRLGE 130
             P  L W ++ R +     P  +L  ++ M++ G+ P+   FP VLKSCA     + G+
Sbjct: 98  QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQ 157

Query: 131 SVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLTGRTSSA 190
            +HG+VL++G D DLY   +L++MY +   L++         +VFD+   R +   T  A
Sbjct: 158 QIHGHVLKLGCDLDLYVHTSLISMYVQNGRLED-------AHKVFDKSPHRDVVSYT--A 217

Query: 191 LVGIVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDSSHSKGRQ 250
           L+    S                                                   R 
Sbjct: 218 LIKGYAS---------------------------------------------------RG 277

Query: 251 SEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFTLSSVLP 310
             +  +K+F+ +P +D+VSWN +I+G A  G Y+E L + + M   N++PD  T+ +V+ 
Sbjct: 278 YIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVS 337

Query: 311 LVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLLTKRDGIS 370
             A+   I  G+++H W    GF ++  + ++LID+Y+KC ++  +C +F  L  +D IS
Sbjct: 338 ACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVIS 385

Query: 371 WNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 418
           WN++I G     L+ E L  F +ML +   P   +  SI+PACAHL  + +
Sbjct: 398 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDI 385

[Close]

BLAST of Cp4.1LG10g05690.1 vs. ExPASy Swiss-Prot
Match: Q9LW64 (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.3e-43
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 439 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 498
           MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1   MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 499 ESIGRERYNFMQKMLLPCGLPPEREDD 526
           ESIGRERYNFMQKMLLPCGLPPERED+
Sbjct: 61  ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]

BLAST of Cp4.1LG10g05690.1 vs. ExPASy Swiss-Prot
Match: P58728 (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.3e-43
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 439 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 498
           MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1   MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 499 ESIGRERYNFMQKMLLPCGLPPEREDD 526
           ESIGRERYNFMQKMLLPCGLPPERE++
Sbjct: 61  ESIGRERYNFMQKMLLPCGLPPEREEE 87

[Close]

BLAST of Cp4.1LG10g05690.1 vs. ExPASy Swiss-Prot
Match: Q9FM64 (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR21 PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.6e-41
Identity = 116/407 (28.50%), Postives = 207/407 (50.86%), Query Frame = 0


Query: 23  SQAQQLHAQVLK---FQASSLSNLSLVLSLYSHSNLLDDSLRLFNTLHFPPPLAWKSIIR 82
           S  +Q+HA++LK   F A +    + ++  Y+  + L+ +  LF+ L      +W +II 
Sbjct: 87  STGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIG 146

Query: 83  CYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLMDLRLGESVHGYVLRVGLDF 142
                GL   +L  F+ ML + I+PD+ V P+V K+C  L   R G  VHGYV++ GL+ 
Sbjct: 147 VKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLED 206

Query: 143 DLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLTGRTSSALVGIV--GSDTEA 202
            ++  ++L +MY K   L +        S+VFDE+ +R      ++ +VG V  G + EA
Sbjct: 207 CVFVASSLADMYGKCGVLDD-------ASKVFDEIPDRNAVA-WNALMVGYVQNGKNEEA 266

Query: 203 FHYDVSCGRREFE-THIVETDCKHSKKFRDLEACNLGPQIKDSSHSKGRQSEDTV----- 262
                   ++  E T +  + C  +    ++     G Q    +   G + ++ +     
Sbjct: 267 IRLFSDMRKQGVEPTRVTVSTCLSAS--ANMGGVEEGKQSHAIAIVNGMELDNILGTSLL 326

Query: 263 ------------RKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSF 322
                         +F+ M E+D+V+WN II+G  + GL E+ + M + M    LK D  
Sbjct: 327 NFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCV 386

Query: 323 TLSSVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLL 382
           TL++++   A   ++  GKE+  + IR  F++D  +AS+++DMYAKC  + D+ +VF   
Sbjct: 387 TLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDST 446

Query: 383 TKRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIM 407
            ++D I WN+++A   ++GL  E LR F+ M +  + P   +++ I+
Sbjct: 447 VEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLII 483

[Close]

BLAST of Cp4.1LG10g05690.1 vs. NCBI nr
Match: XP_023543145.1 (putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita pepo subsp. pepo] >XP_023543146.1 putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 832 bits (2148), Expect = 1.60e-296
Identity = 417/417 (100.00%), Postives = 417/417 (100.00%), Query Frame = 0


Query: 1   MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHSNLLDDSL 60
           MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHSNLLDDSL
Sbjct: 1   MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHSNLLDDSL 60

Query: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLM 120
           RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLM
Sbjct: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLM 120

Query: 121 DLRLGESVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLT 180
           DLRLGESVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLT
Sbjct: 121 DLRLGESVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLT 180

Query: 181 GRTSSALVGIVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDSS 240
           GRTSSALVGIVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDSS
Sbjct: 181 GRTSSALVGIVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDSS 240

Query: 241 HSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFT 300
           HSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFT
Sbjct: 241 HSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFT 300

Query: 301 LSSVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLLT 360
           LSSVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLLT
Sbjct: 301 LSSVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLLT 360

Query: 361 KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 417
           KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL
Sbjct: 361 KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 417

[Close]

BLAST of Cp4.1LG10g05690.1 vs. NCBI nr
Match: XP_022978655.1 (putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita maxima] >XP_022978656.1 putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita maxima] >XP_022978657.1 putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita maxima] >XP_022978658.1 putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita maxima])

HSP 1 Score: 811 bits (2095), Expect = 1.80e-288
Identity = 404/417 (96.88%), Postives = 412/417 (98.80%), Query Frame = 0


Query: 1   MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHSNLLDDSL 60
           MRTSTEALVK+LLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSH NLLDDSL
Sbjct: 1   MRTSTEALVKALLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHINLLDDSL 60

Query: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLM 120
           RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASG+YPDHNVFPSVLKSCALLM
Sbjct: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 121 DLRLGESVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLT 180
           DLRLGESVHGY+LRVGLDFDLYTGNALMNMYSKLRFLQE+GRQRLGT EVFDEMTERTLT
Sbjct: 121 DLRLGESVHGYILRVGLDFDLYTGNALMNMYSKLRFLQESGRQRLGTGEVFDEMTERTLT 180

Query: 181 GRTSSALVGIVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDSS 240
           GRTSSALVG VGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEA NLGPQIKD S
Sbjct: 181 GRTSSALVGSVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEAWNLGPQIKDIS 240

Query: 241 HSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFT 300
           HSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFT
Sbjct: 241 HSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFT 300

Query: 301 LSSVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLLT 360
           LSSVLPLVAEYADIS+GKEIHGWA+RQGFDADGYVASSLIDMYAKCT+VSDSCRVFS+LT
Sbjct: 301 LSSVLPLVAEYADISRGKEIHGWAVRQGFDADGYVASSLIDMYAKCTRVSDSCRVFSILT 360

Query: 361 KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 417
           KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL
Sbjct: 361 KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 417

[Close]

BLAST of Cp4.1LG10g05690.1 vs. NCBI nr
Match: XP_022925769.1 (putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita moschata] >XP_022925770.1 putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita moschata] >XP_022925772.1 putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita moschata])

HSP 1 Score: 811 bits (2094), Expect = 2.55e-288
Identity = 404/417 (96.88%), Postives = 410/417 (98.32%), Query Frame = 0


Query: 1   MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHSNLLDDSL 60
           MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQA SL NLSLVLSLYSH NLLDDSL
Sbjct: 1   MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQALSLPNLSLVLSLYSHINLLDDSL 60

Query: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLM 120
           RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASG+YPDHNVFPSVLKSCALLM
Sbjct: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 121 DLRLGESVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLT 180
           DLRLGESVHGY+LRVGLDFDLYTGNALMNMYSKLRFL+ETGRQRLGT EVFDEMTERTLT
Sbjct: 121 DLRLGESVHGYILRVGLDFDLYTGNALMNMYSKLRFLRETGRQRLGTGEVFDEMTERTLT 180

Query: 181 GRTSSALVGIVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDSS 240
           GRTSSALVG VGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKD S
Sbjct: 181 GRTSSALVGSVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDIS 240

Query: 241 HSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFT 300
           HSKGRQSEDTVRKIFEMMPERDLVSWNT+IAGNARNGLYEETLTMVR MGDANLKPDSFT
Sbjct: 241 HSKGRQSEDTVRKIFEMMPERDLVSWNTVIAGNARNGLYEETLTMVRAMGDANLKPDSFT 300

Query: 301 LSSVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLLT 360
           LSSVLPLVAEYADIS+GKEIHGWAIRQGFDADGYVASSLIDMYAKCT+VSDSCRVFSLLT
Sbjct: 301 LSSVLPLVAEYADISRGKEIHGWAIRQGFDADGYVASSLIDMYAKCTRVSDSCRVFSLLT 360

Query: 361 KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 417
           KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL
Sbjct: 361 KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 417

[Close]

BLAST of Cp4.1LG10g05690.1 vs. NCBI nr
Match: KAG6581381.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 808 bits (2086), Expect = 4.17e-287
Identity = 402/417 (96.40%), Postives = 409/417 (98.08%), Query Frame = 0


Query: 1   MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHSNLLDDSL 60
           MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQA SL NLSLVLSLYSH NLLDDSL
Sbjct: 1   MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQALSLPNLSLVLSLYSHINLLDDSL 60

Query: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLM 120
           RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASG+YPDHNVFPSVLKSCALLM
Sbjct: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 121 DLRLGESVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLT 180
           DLRLGESVHGY+LRVGLDFDLYTGNALMNMYSKLRFLQE+GRQRLGT EVFDEMTERTLT
Sbjct: 121 DLRLGESVHGYILRVGLDFDLYTGNALMNMYSKLRFLQESGRQRLGTGEVFDEMTERTLT 180

Query: 181 GRTSSALVGIVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDSS 240
           GRTSSALVG VGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKD S
Sbjct: 181 GRTSSALVGSVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDIS 240

Query: 241 HSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFT 300
           HSKGRQSEDTVRKIFEMMP+RDLVSWNT+IAGNARNGLYEETLTMVR MGDANLKPDSFT
Sbjct: 241 HSKGRQSEDTVRKIFEMMPKRDLVSWNTVIAGNARNGLYEETLTMVRAMGDANLKPDSFT 300

Query: 301 LSSVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLLT 360
           LSSVLPLVAEYADIS+GKEIHGWAIRQGFD DGYVASSLIDMYAKCT+VSDSCRVFSLLT
Sbjct: 301 LSSVLPLVAEYADISRGKEIHGWAIRQGFDVDGYVASSLIDMYAKCTRVSDSCRVFSLLT 360

Query: 361 KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 417
           KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL
Sbjct: 361 KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 417

[Close]

BLAST of Cp4.1LG10g05690.1 vs. NCBI nr
Match: KAG7034665.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 798 bits (2062), Expect = 5.78e-284
Identity = 397/415 (95.66%), Postives = 405/415 (97.59%), Query Frame = 0


Query: 1   MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHSNLLDDSL 60
           MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQA SL NLSLVLSLYSH NLLDDSL
Sbjct: 1   MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQALSLPNLSLVLSLYSHINLLDDSL 60

Query: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLM 120
           RLFNTLHFPPPLAWKSII CYTSHGLPHQSLASFIGMLASG+YPDHNVFPSVLKSCALLM
Sbjct: 61  RLFNTLHFPPPLAWKSIIHCYTSHGLPHQSLASFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 121 DLRLGESVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLT 180
           DLRLGESVHGY+LRVGLDFDLYTGNALMNMYSKLRFL+ETGRQRLGT EVFDEMTERTLT
Sbjct: 121 DLRLGESVHGYILRVGLDFDLYTGNALMNMYSKLRFLRETGRQRLGTGEVFDEMTERTLT 180

Query: 181 GRTSSALVGIVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDSS 240
           GRTSSALVG VGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKD S
Sbjct: 181 GRTSSALVGSVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDIS 240

Query: 241 HSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFT 300
           HSKGRQSEDTVRKIFEMMP+RDLVSWNT+IAGNARNGLYEETLTMVR MGDANLKPDSFT
Sbjct: 241 HSKGRQSEDTVRKIFEMMPKRDLVSWNTVIAGNARNGLYEETLTMVRAMGDANLKPDSFT 300

Query: 301 LSSVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLLT 360
           LSSVLPLVAEYADIS+GKEIHGWAIRQGFD DGYVASSLIDMYAKCT+VSDSCRVFSLLT
Sbjct: 301 LSSVLPLVAEYADISRGKEIHGWAIRQGFDVDGYVASSLIDMYAKCTRVSDSCRVFSLLT 360

Query: 361 KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTL 415
           KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLT +
Sbjct: 361 KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTNI 415

[Close]

BLAST of Cp4.1LG10g05690.1 vs. ExPASy TrEMBL
Match: A0A6J1ING2 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxima OX=3661 GN=LOC111478561 PE=3 SV=1)

HSP 1 Score: 811 bits (2095), Expect = 8.69e-289
Identity = 404/417 (96.88%), Postives = 412/417 (98.80%), Query Frame = 0


Query: 1   MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHSNLLDDSL 60
           MRTSTEALVK+LLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSH NLLDDSL
Sbjct: 1   MRTSTEALVKALLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHINLLDDSL 60

Query: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLM 120
           RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASG+YPDHNVFPSVLKSCALLM
Sbjct: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 121 DLRLGESVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLT 180
           DLRLGESVHGY+LRVGLDFDLYTGNALMNMYSKLRFLQE+GRQRLGT EVFDEMTERTLT
Sbjct: 121 DLRLGESVHGYILRVGLDFDLYTGNALMNMYSKLRFLQESGRQRLGTGEVFDEMTERTLT 180

Query: 181 GRTSSALVGIVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDSS 240
           GRTSSALVG VGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEA NLGPQIKD S
Sbjct: 181 GRTSSALVGSVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEAWNLGPQIKDIS 240

Query: 241 HSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFT 300
           HSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFT
Sbjct: 241 HSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFT 300

Query: 301 LSSVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLLT 360
           LSSVLPLVAEYADIS+GKEIHGWA+RQGFDADGYVASSLIDMYAKCT+VSDSCRVFS+LT
Sbjct: 301 LSSVLPLVAEYADISRGKEIHGWAVRQGFDADGYVASSLIDMYAKCTRVSDSCRVFSILT 360

Query: 361 KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 417
           KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL
Sbjct: 361 KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 417

[Close]

BLAST of Cp4.1LG10g05690.1 vs. ExPASy TrEMBL
Match: A0A6J1ED49 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita moschata OX=3662 GN=LOC111433079 PE=3 SV=1)

HSP 1 Score: 811 bits (2094), Expect = 1.23e-288
Identity = 404/417 (96.88%), Postives = 410/417 (98.32%), Query Frame = 0


Query: 1   MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHSNLLDDSL 60
           MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQA SL NLSLVLSLYSH NLLDDSL
Sbjct: 1   MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQALSLPNLSLVLSLYSHINLLDDSL 60

Query: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLM 120
           RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASG+YPDHNVFPSVLKSCALLM
Sbjct: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 121 DLRLGESVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLT 180
           DLRLGESVHGY+LRVGLDFDLYTGNALMNMYSKLRFL+ETGRQRLGT EVFDEMTERTLT
Sbjct: 121 DLRLGESVHGYILRVGLDFDLYTGNALMNMYSKLRFLRETGRQRLGTGEVFDEMTERTLT 180

Query: 181 GRTSSALVGIVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDSS 240
           GRTSSALVG VGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKD S
Sbjct: 181 GRTSSALVGSVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDIS 240

Query: 241 HSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFT 300
           HSKGRQSEDTVRKIFEMMPERDLVSWNT+IAGNARNGLYEETLTMVR MGDANLKPDSFT
Sbjct: 241 HSKGRQSEDTVRKIFEMMPERDLVSWNTVIAGNARNGLYEETLTMVRAMGDANLKPDSFT 300

Query: 301 LSSVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLLT 360
           LSSVLPLVAEYADIS+GKEIHGWAIRQGFDADGYVASSLIDMYAKCT+VSDSCRVFSLLT
Sbjct: 301 LSSVLPLVAEYADISRGKEIHGWAIRQGFDADGYVASSLIDMYAKCTRVSDSCRVFSLLT 360

Query: 361 KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 417
           KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL
Sbjct: 361 KRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 417

[Close]

BLAST of Cp4.1LG10g05690.1 vs. ExPASy TrEMBL
Match: A0A0A0KHY2 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G520330 PE=3 SV=1)

HSP 1 Score: 687 bits (1774), Expect = 4.25e-240
Identity = 348/420 (82.86%), Postives = 378/420 (90.00%), Query Frame = 0


Query: 1   MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHSNLLDDSL 60
           MRTSTEALVK+LL+NP +IKSRSQAQQLHAQVLKFQASSL NLSL+LS+YSH NLL DSL
Sbjct: 1   MRTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSL 60

Query: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLM 120
           RLFNT+HFPP LAWKS+IRCYTSHGLPHQSL SFIGMLASG+YPDHNVFPSVLKSCALLM
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 121 DLRLGESVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLT 180
           DL LGES+HGY++RVGLDFDLYTGNALMNMYSKLRFL+E+GRQRLG  EVFDEMTERT +
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 181 GRTSSALVGIVG---SDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIK 240
            RT S LVG  G   SD EAF+YDVSC  REFE  ++E D K   ++R+LEACNLG QIK
Sbjct: 181 VRTVSVLVGNEGRKVSDMEAFNYDVSCRSREFEAQVLEIDYKPRNQYRELEACNLGQQIK 240

Query: 241 DSSHSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPD 300
           D SHSK   SED+VRKIFEMMPE+DLVSWNTIIAGNARNGLYEETL M+R MG ANLKPD
Sbjct: 241 DISHSK---SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPD 300

Query: 301 SFTLSSVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFS 360
           SFTLSSVLPL+AE  DIS+GKEIHG +IRQG DAD YVASSLIDMYAKCT+V+DSCRVF+
Sbjct: 301 SFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFT 360

Query: 361 LLTKRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 417
           LLT+RDGISWNSIIAGCVQNGLFDEGLRFF QMLMAKIKPKSYSFSSIMPACAHLTTLHL
Sbjct: 361 LLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHL 417

[Close]

BLAST of Cp4.1LG10g05690.1 vs. ExPASy TrEMBL
Match: A0A6J1CMA5 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Momordica charantia OX=3673 GN=LOC111012280 PE=3 SV=1)

HSP 1 Score: 668 bits (1724), Expect = 2.07e-232
Identity = 341/426 (80.05%), Postives = 371/426 (87.09%), Query Frame = 0


Query: 1   MRTSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHSNLLDDSL 60
           MRTSTE LVK+LL +P+ IKSRSQAQQLHAQVLK Q SSLSNLSL+LSLYSH NLLDDSL
Sbjct: 1   MRTSTEPLVKALLNSPTTIKSRSQAQQLHAQVLKLQPSSLSNLSLLLSLYSHINLLDDSL 60

Query: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLM 120
           RLFNTLHFPPPLAWKSIIRCYT+HG PHQSLASFIGMLASG YPDHNVFPSVLKSCALLM
Sbjct: 61  RLFNTLHFPPPLAWKSIIRCYTAHGFPHQSLASFIGMLASGQYPDHNVFPSVLKSCALLM 120

Query: 121 DLRLGESVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLT 180
           DL+LGESVHGY++R+GLDFDLYTGNALMNMYS+LRFLQ  G+QRL   EVFDEM+ERT +
Sbjct: 121 DLKLGESVHGYIVRIGLDFDLYTGNALMNMYSRLRFLQGIGKQRLAAGEVFDEMSERTQS 180

Query: 181 GRTSSALVGIVGSDT---EAFHYDVSCGRREFETHIV------ETDCKHSKKFRDLEACN 240
           GR  S  +G  G +    EAFH D SCG REFE+ +V      E D     ++ +LEACN
Sbjct: 181 GRNGSGFLGNEGRNVSCIEAFHSDDSCGNREFESQVVDINQKVELDLNQRNEYSELEACN 240

Query: 241 LGPQIKDSSHSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGD 300
           +  + KD SHSKGRQSED+VRKIFEMMPERDLVSWNTIIAGNARNGL+EETLTMVR MGD
Sbjct: 241 I-EETKDVSHSKGRQSEDSVRKIFEMMPERDLVSWNTIIAGNARNGLHEETLTMVREMGD 300

Query: 301 ANLKPDSFTLSSVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSD 360
           ANLKPDSFTLSSVLPL+AEY DI+KGKEIHG AIRQG DAD +VASSLIDMYAKCT+V D
Sbjct: 301 ANLKPDSFTLSSVLPLIAEYVDINKGKEIHGCAIRQGLDADIFVASSLIDMYAKCTRVVD 360

Query: 361 SCRVFSLLTKRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAH 417
           S RVF+LL KRDGISWNSIIAGCVQNGLFDEGLRFF QML+AKIKPKSYSFSSIMPACAH
Sbjct: 361 SSRVFNLLAKRDGISWNSIIAGCVQNGLFDEGLRFFRQMLVAKIKPKSYSFSSIMPACAH 420

[Close]

BLAST of Cp4.1LG10g05690.1 vs. ExPASy TrEMBL
Match: A0A5D3CSN4 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008440 PE=3 SV=1)

HSP 1 Score: 665 bits (1717), Expect = 1.95e-231
Identity = 338/418 (80.86%), Postives = 372/418 (89.00%), Query Frame = 0


Query: 3   TSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHSNLLDDSLRL 62
           TSTEALV SLL+NP +IKSRSQAQQLHAQVLKFQASSL NLSL+LS+YSH NLL DSLRL
Sbjct: 5   TSTEALVNSLLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL 64

Query: 63  FNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLMDL 122
           FNTLHFPP LAWKS+IRCYTSHGLPH+SL SFIGMLASG+YPDHNVFPSVLK+CA+LMDL
Sbjct: 65  FNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDL 124

Query: 123 RLGESVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLTGR 182
            LGES+HGY++RVGLDFDLYTGNALMNMYSKLRFL+++GRQRLG S+V DEMTERT + R
Sbjct: 125 NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVR 184

Query: 183 TSSALVGIVG---SDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDS 242
           T+S LVG  G   SD EAF+YDVSC  REFE  ++E D K   ++R++EACNLG QIKD 
Sbjct: 185 TASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQQIKDI 244

Query: 243 SHSKGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSF 302
           SHS    S D+VRKIFEMMPE+DLVSWNTIIAGNARNGLY ETLTMVR MG ANLKPDSF
Sbjct: 245 SHS---MSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSF 304

Query: 303 TLSSVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLL 362
           TLSSVLPL+AE  DISKGKEIHG +IRQG DA+ YVASSLIDMYAKCT+V DS RVF+LL
Sbjct: 305 TLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLL 364

Query: 363 TKRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 417
           T+RDGISWNSIIAGCVQNGLFDEGL+FF QMLMAKIKPKSYSFSSIMPACAHLTTLHL
Sbjct: 365 TERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHL 419

[Close]

BLAST of Cp4.1LG10g05690.1 vs. TAIR 10
Match: AT3G23330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 402.1 bits (1032), Expect = 6.7e-112
Identity = 211/415 (50.84%), Postives = 285/415 (68.67%), Query Frame = 0


Query: 3   TSTEALVKSLLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHSNLLDDSLRL 62
           +S++AL+K+L+KNP+ IKS+SQA+QLHAQ ++ Q+ S ++ S+V+S+Y++  LL ++L L
Sbjct: 2   SSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLL 61

Query: 63  FNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLMDL 122
           F TL  PP LAWKS+IRC+T   L  ++LASF+ M ASG  PDHNVFPSVLKSC ++MDL
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 123 RLGESVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLTGR 182
           R GESVHG+++R+G+D DLYTGNALMNMY+KL  +      ++    VFDEM +RT    
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGM----GSKISVGNVFDEMPQRT---- 181

Query: 183 TSSALVGIVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDSSHS 242
                                       ++  + D K        E C +   I      
Sbjct: 182 ----------------------------SNSGDEDVK-------AETCIMPFGI------ 241

Query: 243 KGRQSEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFTLS 302
                 D+VR++FE+MP +D+VS+NTIIAG A++G+YE+ L MVR MG  +LKPDSFTLS
Sbjct: 242 ------DSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLS 301

Query: 303 SVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLLTKR 362
           SVLP+ +EY D+ KGKEIHG+ IR+G D+D Y+ SSL+DMYAK  ++ DS RVFS L  R
Sbjct: 302 SVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCR 361

Query: 363 DGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 418
           DGISWNS++AG VQNG ++E LR F QM+ AK+KP + +FSS++PACAHL TLHL
Sbjct: 362 DGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHL 361

[Close]

BLAST of Cp4.1LG10g05690.1 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 179.1 bits (453), Expect = 9.2e-45
Identity = 116/411 (28.22%), Postives = 195/411 (47.45%), Query Frame = 0


Query: 11  SLLKNPSAIKSRSQAQQLHAQVLKFQAS----SLSNLSLVLSLYSHSNLLDDSLRLFNTL 70
           SLL N   ++S    + +HAQ++K        +LS L     L  H   L  ++ +F T+
Sbjct: 38  SLLHNCKTLQS---LRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTI 97

Query: 71  HFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLMDLRLGE 130
             P  L W ++ R +     P  +L  ++ M++ G+ P+   FP VLKSCA     + G+
Sbjct: 98  QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQ 157

Query: 131 SVHGYVLRVGLDFDLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLTGRTSSA 190
            +HG+VL++G D DLY   +L++MY +   L++         +VFD+   R +   T  A
Sbjct: 158 QIHGHVLKLGCDLDLYVHTSLISMYVQNGRLED-------AHKVFDKSPHRDVVSYT--A 217

Query: 191 LVGIVGSDTEAFHYDVSCGRREFETHIVETDCKHSKKFRDLEACNLGPQIKDSSHSKGRQ 250
           L+    S                                                   R 
Sbjct: 218 LIKGYAS---------------------------------------------------RG 277

Query: 251 SEDTVRKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSFTLSSVLP 310
             +  +K+F+ +P +D+VSWN +I+G A  G Y+E L + + M   N++PD  T+ +V+ 
Sbjct: 278 YIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVS 337

Query: 311 LVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLLTKRDGIS 370
             A+   I  G+++H W    GF ++  + ++LID+Y+KC ++  +C +F  L  +D IS
Sbjct: 338 ACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVIS 385

Query: 371 WNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIMPACAHLTTLHL 418
           WN++I G     L+ E L  F +ML +   P   +  SI+PACAHL  + +
Sbjct: 398 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDI 385

[Close]

BLAST of Cp4.1LG10g05690.1 vs. TAIR 10
Match: AT3G23325.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10 )

HSP 1 Score: 179.1 bits (453), Expect = 9.2e-45
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 439 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 498
           MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1   MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 499 ESIGRERYNFMQKMLLPCGLPPEREDD 526
           ESIGRERYNFMQKMLLPCGLPPERED+
Sbjct: 61  ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]

BLAST of Cp4.1LG10g05690.1 vs. TAIR 10
Match: AT4G14342.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10 )

HSP 1 Score: 179.1 bits (453), Expect = 9.2e-45
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 439 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 498
           MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1   MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 499 ESIGRERYNFMQKMLLPCGLPPEREDD 526
           ESIGRERYNFMQKMLLPCGLPPERE++
Sbjct: 61  ESIGRERYNFMQKMLLPCGLPPEREEE 87

[Close]

BLAST of Cp4.1LG10g05690.1 vs. TAIR 10
Match: AT5G55740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 170.6 bits (431), Expect = 3.3e-42
Identity = 116/407 (28.50%), Postives = 207/407 (50.86%), Query Frame = 0


Query: 23  SQAQQLHAQVLK---FQASSLSNLSLVLSLYSHSNLLDDSLRLFNTLHFPPPLAWKSIIR 82
           S  +Q+HA++LK   F A +    + ++  Y+  + L+ +  LF+ L      +W +II 
Sbjct: 87  STGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIG 146

Query: 83  CYTSHGLPHQSLASFIGMLASGIYPDHNVFPSVLKSCALLMDLRLGESVHGYVLRVGLDF 142
                GL   +L  F+ ML + I+PD+ V P+V K+C  L   R G  VHGYV++ GL+ 
Sbjct: 147 VKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLED 206

Query: 143 DLYTGNALMNMYSKLRFLQETGRQRLGTSEVFDEMTERTLTGRTSSALVGIV--GSDTEA 202
            ++  ++L +MY K   L +        S+VFDE+ +R      ++ +VG V  G + EA
Sbjct: 207 CVFVASSLADMYGKCGVLDD-------ASKVFDEIPDRNAVA-WNALMVGYVQNGKNEEA 266

Query: 203 FHYDVSCGRREFE-THIVETDCKHSKKFRDLEACNLGPQIKDSSHSKGRQSEDTV----- 262
                   ++  E T +  + C  +    ++     G Q    +   G + ++ +     
Sbjct: 267 IRLFSDMRKQGVEPTRVTVSTCLSAS--ANMGGVEEGKQSHAIAIVNGMELDNILGTSLL 326

Query: 263 ------------RKIFEMMPERDLVSWNTIIAGNARNGLYEETLTMVRGMGDANLKPDSF 322
                         +F+ M E+D+V+WN II+G  + GL E+ + M + M    LK D  
Sbjct: 327 NFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCV 386

Query: 323 TLSSVLPLVAEYADISKGKEIHGWAIRQGFDADGYVASSLIDMYAKCTQVSDSCRVFSLL 382
           TL++++   A   ++  GKE+  + IR  F++D  +AS+++DMYAKC  + D+ +VF   
Sbjct: 387 TLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDST 446

Query: 383 TKRDGISWNSIIAGCVQNGLFDEGLRFFHQMLMAKIKPKSYSFSSIM 407
            ++D I WN+++A   ++GL  E LR F+ M +  + P   +++ I+
Sbjct: 447 VEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLII 483

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g05690.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW63	9.4e-111	50.84	Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th...	[more]
Q9LN01	1.3e-43	28.22	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9LW64	1.3e-43	93.10	Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 P...	[more]
P58728	1.3e-43	93.10	Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 P...	[more]
Q9FM64	4.6e-41	28.50	Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidop...	[more]

BLAST of Cp4.1LG10g05690.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543145.1	1.60e-296	100.00	putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita pepo s...	[more]
XP_022978655.1	1.80e-288	96.88	putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita maxima...	[more]
XP_022925769.1	2.55e-288	96.88	putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita moscha...	[more]
KAG6581381.1	4.17e-287	96.40	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
KAG7034665.1	5.78e-284	95.66	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]

BLAST of Cp4.1LG10g05690.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ING2	8.69e-289	96.88	putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxi...	[more]
A0A6J1ED49	1.23e-288	96.88	putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita mosc...	[more]
A0A0A0KHY2	4.25e-240	82.86	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G5203...	[more]
A0A6J1CMA5	2.07e-232	80.05	putative pentatricopeptide repeat-containing protein At3g23330 OS=Momordica char...	[more]
A0A5D3CSN4	1.95e-231	80.86	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]

BLAST of Cp4.1LG10g05690.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23330.1	6.7e-112	50.84	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G08070.1	9.2e-45	28.22	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G23325.1	9.2e-45	93.10	Splicing factor 3B subunit 5/RDS3 complex subunit 10	[more]
AT4G14342.1	9.2e-45	93.10	Splicing factor 3B subunit 5/RDS3 complex subunit 10	[more]
AT5G55740.1	3.3e-42	28.50	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 264..298 e-value: 0.0017 score: 16.4 coord: 365..397 e-value: 7.4E-8 score: 30.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 365..410 e-value: 7.3E-8 score: 32.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 264..290 e-value: 0.0071 score: 16.5 coord: 73..102 e-value: 1.2 score: 9.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 363..397 score: 11.838262
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 262..296 score: 9.985802
IPR009846	Splicing factor 3B subunit 5/RDS3 complex subunit 10	PFAM	PF07189	SF3b10	coord: 443..520 e-value: 8.2E-35 score: 118.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 9..242 e-value: 9.2E-12 score: 47.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 243..311 e-value: 3.6E-10 score: 41.5 coord: 312..422 e-value: 7.6E-19 score: 69.7
None	No IPR available	PANTHER	PTHR47929	FAMILY NOT NAMED	coord: 249..415 coord: 20..178

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG10g05690	Cp4.1LG10g05690	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG10g05690.1:exon:001	Cp4.1LG10g05690.1:exon:001	exon
Cp4.1LG10g05690.1:exon:002	Cp4.1LG10g05690.1:exon:002	exon
Cp4.1LG10g05690.1:exon:003	Cp4.1LG10g05690.1:exon:003	exon
Cp4.1LG10g05690.1:exon:004	Cp4.1LG10g05690.1:exon:004	exon
Cp4.1LG10g05690.1:exon:005	Cp4.1LG10g05690.1:exon:005	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG10g05690.1:cds:005	Cp4.1LG10g05690.1:cds:005	CDS
Cp4.1LG10g05690.1:cds:004	Cp4.1LG10g05690.1:cds:004	CDS
Cp4.1LG10g05690.1:cds:003	Cp4.1LG10g05690.1:cds:003	CDS
Cp4.1LG10g05690.1:cds:002	Cp4.1LG10g05690.1:cds:002	CDS
Cp4.1LG10g05690.1:cds:001	Cp4.1LG10g05690.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG10g05690.1:three_prime_utr:001	Cp4.1LG10g05690.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG10g05690.1	Cp4.1LG10g05690.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding