Cp4.1LG04g07740.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g07740.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG04: 3920809 .. 3921069 (+)
Sequence length261
RNA-Seq ExpressionCp4.1LG04g07740.1
SyntenyCp4.1LG04g07740.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCGAGCCGTTTTGCGCCAAGTATCGTGACTTACAATTCATTGATATCAGCTTTTGCACGGGACGGTTTGTTAGATGAAGCTATGGAGCTAAAAAGACAGATGGTGGAGAAGGGGATCGAGCCTGATGTTTTTACTTACACGACGTTGTTGTCTGGTTTTGAGAAGACGGGAAAGGACGATTGTGCGATGAGAGTATTTGATGAGATGAGTTGCAGGGTGCCAACTGAATATATGCGCATTCAATGTGTTGATTAA

mRNA sequence

ATGGAATCGAGCCGTTTTGCGCCAAGTATCGTGACTTACAATTCATTGATATCAGCTTTTGCACGGGACGGTTTGTTAGATGAAGCTATGGAGCTAAAAAGACAGATGGTGGAGAAGGGGATCGAGCCTGATGTTTTTACTTACACGACGTTGTTGTCTGGTTTTGAGAAGACGGGAAAGGACGATTGTGCGATGAGAGTATTTGATGAGATGAGTTGCAGGGTGCCAACTGAATATATGCGCATTCAATGTGTTGATTAA

Coding sequence (CDS)

ATGGAATCGAGCCGTTTTGCGCCAAGTATCGTGACTTACAATTCATTGATATCAGCTTTTGCACGGGACGGTTTGTTAGATGAAGCTATGGAGCTAAAAAGACAGATGGTGGAGAAGGGGATCGAGCCTGATGTTTTTACTTACACGACGTTGTTGTCTGGTTTTGAGAAGACGGGAAAGGACGATTGTGCGATGAGAGTATTTGATGAGATGAGTTGCAGGGTGCCAACTGAATATATGCGCATTCAATGTGTTGATTAA

Protein sequence

MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMRVFDEMSCRVPTEYMRIQCVD
Homology
[Close]
BLAST of Cp4.1LG04g07740.1 vs. ExPASy Swiss-Prot
Match: Q9LYZ9 (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana OX=3702 GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-23
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 6   FAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAM 65
           F+PSIVTYNSLISA+ARDG+LDEAMELK QM EKG +PDVFTYTTLLSGFE+ GK + AM
Sbjct: 345 FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404

Query: 66  RVFDEM 72
            +F+EM
Sbjct: 405 SIFEEM 410

[Close]
BLAST of Cp4.1LG04g07740.1 vs. ExPASy Swiss-Prot
Match: Q9LFC5 (Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana OX=3702 GN=At5g01110 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.9e-11
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 0 

Query: 8   PSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMRV 67
           P IVTYN+LISA++  GL++EA EL   M  KG  P V+TY T+++G  K GK + A  V
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327

Query: 68  FDEM 72
           F EM
Sbjct: 328 FAEM 331

[Close]
BLAST of Cp4.1LG04g07740.1 vs. ExPASy Swiss-Prot
Match: P0C7Q9 (Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g22960 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-10
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 8   PSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMRV 67
           PSIVTYN+LI      G L+ A  LK +M  + I PDV TYTTL+ GF K G    A  V
Sbjct: 407 PSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEV 466

Query: 68  FDEM 72
           +DEM
Sbjct: 467 YDEM 470

[Close]
BLAST of Cp4.1LG04g07740.1 vs. ExPASy Swiss-Prot
Match: Q9FLL3 (Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g41170 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-10
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 0 

Query: 7   APSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMR 66
           AP+I TY SLI+ F  +G +DEA ++   M  KG  PDV  YT+L++GF K  K D AM+
Sbjct: 279 APNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMK 338

Query: 67  VFDEMS 73
           +F EMS
Sbjct: 339 IFYEMS 344

[Close]
BLAST of Cp4.1LG04g07740.1 vs. ExPASy Swiss-Prot
Match: Q9LPX2 (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.9e-10
Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 7   APSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMR 66
           AP+ +TYNSLI  F ++  L+EA+++   M+ KG +PD+ T+  L++G+ K  + D  + 
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424

Query: 67  VFDEMSCR 75
           +F EMS R
Sbjct: 425 LFREMSLR 432

[Close]
BLAST of Cp4.1LG04g07740.1 vs. NCBI nr
Match: KAG7022489.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135 bits (341), Expect = 7.73e-37
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 0 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           MESSRFAPSIV+YNSLISA+ARDGLLDEAMELKRQM+EKGIE DVFTYTTLLSGFEKTGK
Sbjct: 59  MESSRFAPSIVSYNSLISAYARDGLLDEAMELKRQMMEKGIEHDVFTYTTLLSGFEKTGK 118

Query: 61  DDCAMRVFDEM 71
           DDCAMRVFDEM
Sbjct: 119 DDCAMRVFDEM 129

[Close]
BLAST of Cp4.1LG04g07740.1 vs. NCBI nr
Match: KAG6588704.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135 bits (341), Expect = 2.47e-35
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 0 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           MESSRFAPSIV+YNSLISA+ARDGLLDEAMELKRQM+EKGIE DVFTYTTLLSGFEKTGK
Sbjct: 279 MESSRFAPSIVSYNSLISAYARDGLLDEAMELKRQMMEKGIEHDVFTYTTLLSGFEKTGK 338

Query: 61  DDCAMRVFDEM 71
           DDCAMRVFDEM
Sbjct: 339 DDCAMRVFDEM 349

[Close]
BLAST of Cp4.1LG04g07740.1 vs. NCBI nr
Match: XP_038888056.1 (pentatricopeptide repeat-containing protein At5g02860 [Benincasa hispida])

HSP 1 Score: 128 bits (322), Expect = 3.42e-32
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+S FAPSIVTYNSLISA+ARDGLLDEAMELK QMVEKGI+PDVFTYTTLLSGFEKTGK
Sbjct: 354 MEASGFAPSIVTYNSLISAYARDGLLDEAMELKTQMVEKGIKPDVFTYTTLLSGFEKTGK 413

Query: 61  DDCAMRVFDEM 71
           DD AMRVF+EM
Sbjct: 414 DDYAMRVFEEM 424

[Close]
BLAST of Cp4.1LG04g07740.1 vs. NCBI nr
Match: XP_004137089.1 (pentatricopeptide repeat-containing protein At5g02860 [Cucumis sativus] >KGN43935.2 hypothetical protein Csa_017163 [Cucumis sativus])

HSP 1 Score: 125 bits (315), Expect = 3.01e-31
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+S FAPSIVTYNSLISA+ARDGLLDEAMELK QMV+KGI+PDVFTYTTLLSGFEKTGK
Sbjct: 352 MEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 411

Query: 61  DDCAMRVFDEM 71
           DD AM+VF+EM
Sbjct: 412 DDYAMKVFEEM 422

[Close]
BLAST of Cp4.1LG04g07740.1 vs. NCBI nr
Match: KAA0031354.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK06806.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (314), Expect = 4.12e-31
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+S FAPSIVTYNSLISA+ARDGLLDEA+ELK QMV+KGI+PDVFTYTTLLSGFEKTGK
Sbjct: 354 MEASGFAPSIVTYNSLISAYARDGLLDEAIELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 413

Query: 61  DDCAMRVFDEM 71
           DD AMRVF+EM
Sbjct: 414 DDYAMRVFEEM 424

[Close]
BLAST of Cp4.1LG04g07740.1 vs. ExPASy TrEMBL
Match: A0A0A0K4H7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071530 PE=4 SV=1)

HSP 1 Score: 125 bits (315), Expect = 1.47e-31
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+S FAPSIVTYNSLISA+ARDGLLDEAMELK QMV+KGI+PDVFTYTTLLSGFEKTGK
Sbjct: 352 MEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 411

Query: 61  DDCAMRVFDEM 71
           DD AM+VF+EM
Sbjct: 412 DDYAMKVFEEM 422

[Close]
BLAST of Cp4.1LG04g07740.1 vs. ExPASy TrEMBL
Match: A0A5A7SJN5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001090 PE=4 SV=1)

HSP 1 Score: 125 bits (314), Expect = 1.99e-31
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+S FAPSIVTYNSLISA+ARDGLLDEA+ELK QMV+KGI+PDVFTYTTLLSGFEKTGK
Sbjct: 354 MEASGFAPSIVTYNSLISAYARDGLLDEAIELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 413

Query: 61  DDCAMRVFDEM 71
           DD AMRVF+EM
Sbjct: 414 DDYAMRVFEEM 424

[Close]
BLAST of Cp4.1LG04g07740.1 vs. ExPASy TrEMBL
Match: A0A1S3C150 (pentatricopeptide repeat-containing protein At5g02860 OS=Cucumis melo OX=3656 GN=LOC103495294 PE=4 SV=1)

HSP 1 Score: 125 bits (314), Expect = 2.00e-31
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+S FAPSIVTYNSLISA+ARDGLLDEA+ELK QMV+KGI+PDVFTYTTLLSGFEKTGK
Sbjct: 370 MEASGFAPSIVTYNSLISAYARDGLLDEAIELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 429

Query: 61  DDCAMRVFDEM 71
           DD AMRVF+EM
Sbjct: 430 DDYAMRVFEEM 440

[Close]
BLAST of Cp4.1LG04g07740.1 vs. ExPASy TrEMBL
Match: A0A6J1IBL6 (pentatricopeptide repeat-containing protein At5g02860 OS=Cucurbita maxima OX=3661 GN=LOC111471013 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 5.06e-31
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+  FAPSIVTYNSLISA+AR GLLDEAMELK QMVEKGI+PDVFTYTTLLSGFEKTGK
Sbjct: 349 MEAGGFAPSIVTYNSLISAYARGGLLDEAMELKTQMVEKGIKPDVFTYTTLLSGFEKTGK 408

Query: 61  DDCAMRVFDEM 71
           DD AMRVF+EM
Sbjct: 409 DDYAMRVFEEM 419

[Close]
BLAST of Cp4.1LG04g07740.1 vs. ExPASy TrEMBL
Match: A0A6J1GLL1 (pentatricopeptide repeat-containing protein At5g02860 OS=Cucurbita moschata OX=3662 GN=LOC111455390 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 5.06e-31
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 1   MESSRFAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGK 60
           ME+  FAPSIVTYNSLISA+AR GLLDEAMELK QMVEKGI+PDVFTYTTLLSGFEKTGK
Sbjct: 349 MEAGGFAPSIVTYNSLISAYARGGLLDEAMELKTQMVEKGIKPDVFTYTTLLSGFEKTGK 408

Query: 61  DDCAMRVFDEM 71
           DD AMRVF+EM
Sbjct: 409 DDYAMRVFEEM 419

[Close]
BLAST of Cp4.1LG04g07740.1 vs. TAIR 10
Match: AT5G02860.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 2.5e-24
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 6   FAPSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAM 65
           F+PSIVTYNSLISA+ARDG+LDEAMELK QM EKG +PDVFTYTTLLSGFE+ GK + AM
Sbjct: 345 FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404

Query: 66  RVFDEM 72
            +F+EM
Sbjct: 405 SIFEEM 410

[Close]
BLAST of Cp4.1LG04g07740.1 vs. TAIR 10
Match: AT5G01110.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 4.9e-12
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 0 

Query: 8   PSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMRV 67
           P IVTYN+LISA++  GL++EA EL   M  KG  P V+TY T+++G  K GK + A  V
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327

Query: 68  FDEM 72
           F EM
Sbjct: 328 FAEM 331

[Close]
BLAST of Cp4.1LG04g07740.1 vs. TAIR 10
Match: AT1G22960.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 8   PSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMRV 67
           PSIVTYN+LI      G L+ A  LK +M  + I PDV TYTTL+ GF K G    A  V
Sbjct: 407 PSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEV 466

Query: 68  FDEM 72
           +DEM
Sbjct: 467 YDEM 470

[Close]
BLAST of Cp4.1LG04g07740.1 vs. TAIR 10
Match: AT5G41170.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-11
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 0 

Query: 7   APSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMR 66
           AP+I TY SLI+ F  +G +DEA ++   M  KG  PDV  YT+L++GF K  K D AM+
Sbjct: 279 APNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMK 338

Query: 67  VFDEMS 73
           +F EMS
Sbjct: 339 IFYEMS 344

[Close]
BLAST of Cp4.1LG04g07740.1 vs. TAIR 10
Match: AT1G12775.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.2e-11
Identity = 27/68 (39.71%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 7   APSIVTYNSLISAFARDGLLDEAMELKRQMVEKGIEPDVFTYTTLLSGFEKTGKDDCAMR 66
           AP+ +TYNSLI  F ++  L+EA+++   M+ KG +PD+ T+  L++G+ K  + D  + 
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424

Query: 67  VFDEMSCR 75
           +F EMS R
Sbjct: 425 LFREMSLR 432

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g07740.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LYZ93.5e-2377.27Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana OX... [more]
Q9LFC56.9e-1151.56Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana OX... [more]
P0C7Q92.6e-1051.56Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidop... [more]
Q9FLL33.4e-1050.00Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidop... [more]
Q9LPX25.9e-1039.71Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidop... [more]
BLAST of Cp4.1LG04g07740.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022489.17.73e-3794.37Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG6588704.12.47e-3594.37Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_038888056.13.42e-3290.14pentatricopeptide repeat-containing protein At5g02860 [Benincasa hispida][more]
XP_004137089.13.01e-3187.32pentatricopeptide repeat-containing protein At5g02860 [Cucumis sativus] >KGN4393... [more]
KAA0031354.14.12e-3187.32pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK06806... [more]
BLAST of Cp4.1LG04g07740.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4H71.47e-3187.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071530 PE=4 SV=1[more]
A0A5A7SJN51.99e-3187.32Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3C1502.00e-3187.32pentatricopeptide repeat-containing protein At5g02860 OS=Cucumis melo OX=3656 GN... [more]
A0A6J1IBL65.06e-3187.32pentatricopeptide repeat-containing protein At5g02860 OS=Cucurbita maxima OX=366... [more]
A0A6J1GLL15.06e-3187.32pentatricopeptide repeat-containing protein At5g02860 OS=Cucurbita moschata OX=3... [more]
BLAST of Cp4.1LG04g07740.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02860.12.5e-2477.27Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G01110.14.9e-1251.56Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G22960.11.9e-1151.56Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G41170.12.4e-1150.00Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT1G12775.14.2e-1139.71Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..45
e-value: 8.5E-12
score: 42.5
coord: 46..73
e-value: 2.3E-5
score: 22.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 8..55
e-value: 2.5E-18
score: 66.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..74
score: 9.624079
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 13.997638
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..82
e-value: 4.2E-24
score: 86.9
NoneNo IPR availablePANTHERPTHR47941PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIALcoord: 1..73

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG04g07740Cp4.1LG04g07740gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG04g07740.1:exon:001Cp4.1LG04g07740.1:exon:001exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG04g07740.1:cds:001Cp4.1LG04g07740.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG04g07740.1Cp4.1LG04g07740.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding