Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCGTATGTGAATGCATTTCAAGTAAATCCAAAAACCTTAAATCGTTGTTTAATAATTCAACTGAAAGTGGTATGTATACCTCCTGCAGCTGTCGTTGTAACTGGGACGCGGAAACTGAAGAGCATGCTCCTGCAAGCACGCGCCAAAGCCTTGAACACTGGTCATTTGGAACACCCAACCGATAACAAAACTTTCGCAGATGATGAACCTTCTTCACGGACCAACCAGCTACTGGAATCGTTTCCGGAAAAGGAAAACCGCCGAGGAGGATATGTGGAAGGGCGCAGAAGTTTACAGAATGATGACGGCGATGTTTGCAATTGCTGCGGTGGTCGTCGTTGTGGTCGAAATAGTTCCGGTGACAGAACGTCGGAGGAAGCAGACGGAGAGGTCCATGTGATGTGA mRNA sequence ATGGCGTATGTGAATGCATTTCAAGTAAATCCAAAAACCTTAAATCGTTGTTTAATAATTCAACTGAAAGTGGTATGTATACCTCCTGCAGCTGTCGTTGTAACTGGGACGCGGAAACTGAAGAGCATGCTCCTGCAAGCACGCGCCAAAGCCTTGAACACTGGTCATTTGGAACACCCAACCGATAACAAAACTTTCGCAGATGATGAACCTTCTTCACGGACCAACCAGCTACTGGAATCGTTTCCGGAAAAGGAAAACCGCCGAGGAGGATATGTGGAAGGGCGCAGAAGTTTACAGAATGATGACGGCGATGTTTGCAATTGCTGCGGTGGTCGTCGTTGTGGTCGAAATAGTTCCGGTGACAGAACGTCGGAGGAAGCAGACGGAGAGGTCCATGTGATGTGA Coding sequence (CDS) ATGGCGTATGTGAATGCATTTCAAGTAAATCCAAAAACCTTAAATCGTTGTTTAATAATTCAACTGAAAGTGGTATGTATACCTCCTGCAGCTGTCGTTGTAACTGGGACGCGGAAACTGAAGAGCATGCTCCTGCAAGCACGCGCCAAAGCCTTGAACACTGGTCATTTGGAACACCCAACCGATAACAAAACTTTCGCAGATGATGAACCTTCTTCACGGACCAACCAGCTACTGGAATCGTTTCCGGAAAAGGAAAACCGCCGAGGAGGATATGTGGAAGGGCGCAGAAGTTTACAGAATGATGACGGCGATGTTTGCAATTGCTGCGGTGGTCGTCGTTGTGGTCGAAATAGTTCCGGTGACAGAACGTCGGAGGAAGCAGACGGAGAGGTCCATGTGATGTGA Protein sequence MAYVNAFQVNPKTLNRCLIIQLKVVCIPPAAVVVTGTRKLKSMLLQARAKALNTGHLEHPTDNKTFADDEPSSRTNQLLESFPEKENRRGGYVEGRRSLQNDDGDVCNCCGGRRCGRNSSGDRTSEEADGEVHVM
Homology
BLAST of Cp4.1LG03g17140.1 vs. ExPASy TrEMBL
Match: A0A0A0L7L5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G125540 PE=4 SV=1) HSP 1 Score: 102 bits (253), Expect = 1.31e-24 Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 0 Query: 33 VVTGTRKLKSMLLQARAKALNTGHLEHPTDNKTFADDEPSSRTNQLLESFPEKENRRGGY 92 V TGTRKLKSM QARA ALNTGHLE T+NKTF D++ SSRT QL +S P+++ ++ Sbjct: 8 VATGTRKLKSMFPQARAIALNTGHLEQLTENKTFTDNQASSRTKQLPDSIPDEKAKKTPR 67
Query: 93 VEGRRSL--QNDDGDVCNCCGGRRCGRNSSGDRTSEEADGEVHVM 135 +L +NDDGD C+C G GR+SSGD + A GEVHV+ Sbjct: 68 KMRGSALKSENDDGDSCDCSGSHDSGRSSSGDGAWKGAGGEVHVI 112
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L7L5 | 1.31e-24 | 54.29 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G125540 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 55..69 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 81..97 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 55..97 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 119..135 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 116..135 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Cp4.1LG03g17140.1:exon:001 | Cp4.1LG03g17140.1:exon:001 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Cp4.1LG03g17140.1:cds:001 | Cp4.1LG03g17140.1:cds:001 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Cp4.1LG03g17140.1 | Cp4.1LG03g17140.1-protein | polypeptide |
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