Cp4.1LG03g17140 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g17140
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG03: 12850414 .. 12850821 (-)
RNA-Seq Expression	Cp4.1LG03g17140
Synteny	Cp4.1LG03g17140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTATGTGAATGCATTTCAAGTAAATCCAAAAACCTTAAATCGTTGTTTAATAATTCAACTGAAAGTGGTATGTATACCTCCTGCAGCTGTCGTTGTAACTGGGACGCGGAAACTGAAGAGCATGCTCCTGCAAGCACGCGCCAAAGCCTTGAACACTGGTCATTTGGAACACCCAACCGATAACAAAACTTTCGCAGATGATGAACCTTCTTCACGGACCAACCAGCTACTGGAATCGTTTCCGGAAAAGGAAAACCGCCGAGGAGGATATGTGGAAGGGCGCAGAAGTTTACAGAATGATGACGGCGATGTTTGCAATTGCTGCGGTGGTCGTCGTTGTGGTCGAAATAGTTCCGGTGACAGAACGTCGGAGGAAGCAGACGGAGAGGTCCATGTGATGTGA

mRNA sequence

ATGGCGTATGTGAATGCATTTCAAGTAAATCCAAAAACCTTAAATCGTTGTTTAATAATTCAACTGAAAGTGGTATGTATACCTCCTGCAGCTGTCGTTGTAACTGGGACGCGGAAACTGAAGAGCATGCTCCTGCAAGCACGCGCCAAAGCCTTGAACACTGGTCATTTGGAACACCCAACCGATAACAAAACTTTCGCAGATGATGAACCTTCTTCACGGACCAACCAGCTACTGGAATCGTTTCCGGAAAAGGAAAACCGCCGAGGAGGATATGTGGAAGGGCGCAGAAGTTTACAGAATGATGACGGCGATGTTTGCAATTGCTGCGGTGGTCGTCGTTGTGGTCGAAATAGTTCCGGTGACAGAACGTCGGAGGAAGCAGACGGAGAGGTCCATGTGATGTGA

Coding sequence (CDS)

ATGGCGTATGTGAATGCATTTCAAGTAAATCCAAAAACCTTAAATCGTTGTTTAATAATTCAACTGAAAGTGGTATGTATACCTCCTGCAGCTGTCGTTGTAACTGGGACGCGGAAACTGAAGAGCATGCTCCTGCAAGCACGCGCCAAAGCCTTGAACACTGGTCATTTGGAACACCCAACCGATAACAAAACTTTCGCAGATGATGAACCTTCTTCACGGACCAACCAGCTACTGGAATCGTTTCCGGAAAAGGAAAACCGCCGAGGAGGATATGTGGAAGGGCGCAGAAGTTTACAGAATGATGACGGCGATGTTTGCAATTGCTGCGGTGGTCGTCGTTGTGGTCGAAATAGTTCCGGTGACAGAACGTCGGAGGAAGCAGACGGAGAGGTCCATGTGATGTGA

Protein sequence

MAYVNAFQVNPKTLNRCLIIQLKVVCIPPAAVVVTGTRKLKSMLLQARAKALNTGHLEHPTDNKTFADDEPSSRTNQLLESFPEKENRRGGYVEGRRSLQNDDGDVCNCCGGRRCGRNSSGDRTSEEADGEVHVM

Homology

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BLAST of Cp4.1LG03g17140 vs. ExPASy TrEMBL
Match: A0A0A0L7L5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G125540 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 1.31e-24
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 33  VVTGTRKLKSMLLQARAKALNTGHLEHPTDNKTFADDEPSSRTNQLLESFPEKENRRGGY 92
           V TGTRKLKSM  QARA ALNTGHLE  T+NKTF D++ SSRT QL +S P+++ ++   
Sbjct: 8   VATGTRKLKSMFPQARAIALNTGHLEQLTENKTFTDNQASSRTKQLPDSIPDEKAKKTPR 67

Query: 93  VEGRRSL--QNDDGDVCNCCGGRRCGRNSSGDRTSEEADGEVHVM 135
                +L  +NDDGD C+C G    GR+SSGD   + A GEVHV+
Sbjct: 68  KMRGSALKSENDDGDSCDCSGSHDSGRSSSGDGAWKGAGGEVHVI 112

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g17140 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g17140 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g17140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7L5	1.31e-24	54.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G125540 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g17140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g17140.1	Cp4.1LG03g17140.1	mRNA