Cp4.1LG03g02690.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g02690.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG03: 420876 .. 425007 (-)
Sequence length	1229
RNA-Seq Expression	Cp4.1LG03g02690.1
Synteny	Cp4.1LG03g02690.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGAATAATCCAATGGCGGGAACTCAAAGACGCTGAGAAATTCATCACAGGCTCTCGTAGCCGCCAAGAAAAAGCCACCAATATCGGCATTCCATTGGCCAATTGAATTGTTCATGGCGCCGGACGGAGTACCAGGTAGCGGCTCCTTCGTCAGTGTTGCCATTTTTCCGCATCTGGAAACTCATCTTCTATGCGGAGAGCCAAGACAGAGGCAGAGACAAGCGAATAGAGGGCGAACCAGTCTCTGAACCGATCGATGAGGGAGATGAGAGATGTTTGAAGGAACGATCGTTTTATCGGCTCAGAAGCTCGAAGTCTGTATGAGGTCAGAAAGTTATTGTGAAATTATGTGATTGAGTCCTGTGATATCGTATATGCCTTCTTCCACGGATGGCTATTTATTTCGGATTCACTAGAAGCACCTTTTTTAGTTTTGGCCACTCACTTAATCGATGTCTGGAATGTACTTATAGCTTGATTCACTTTCAATAAGAGGCAAATACACGCTACGTTTTGCTTGTAACTGAAGATTAGGAACCGTGTGAATTCGATTGGGCATAAAGTGCAGAAGAAATTTTGCATAAAGGAGTAGGAGAGGGATAAATAATTGAAAAGAAAGAAGGTTTATTAGAAAATTAGAAAGATAGACACTTTTGAAAGAGAAGGCTCTCACACACTCTCTAATCCTCTATTACTTGTTTTTTAAGCGACGCTGTATATTAGGTATACCGTGGGAAATTATGTTATCAGACGTTTAAGGTTTTTGCTTCCTACACAAATTAGTTTGTCACGATGAACAATAGGTTGATGCTTTATTATAAGATAAAGGATTAAATGAAGATATTGTCCGGGAGTTCTGGCATGCAGGCAGGTGTAAGCTGTAAAATTTCAGGTGAAGGTCAGAAAATAAGGCATGGGCTATTTGACTATACTCCTAGATACTGTTCAGATCATTGGAAGGGAGTGTGTTTATAAGTAAGGAATACTATATCCAGGTATGAGGCCTTTTAGGGGGAGTGTGTTTATAAGTAAGGAATACTATATCCAGGTATGAGGCCTTTTAGGGAAACTAAAAACAAAGCCATGAGACTTATGTTCAAAGTGGACAATATCATATCATTGTGGAGATTTGTGATTCCTAACATGATATCAGAGTCATGCCCTTAACTTAGTCATGTCAATAGAATTCTCAAATCAATAGAATTCTCAAATGTCGAACAAATAAGTTGGGACCCTAGAAGGTGTAGTCAAAAGTGACTCAAGTGTCGAACAAAAGGTGTACTATGTTTCAGGACTCTAGAGAAAGGAGTCGAGCCTCAATTAAGGGGAGATTGTTCGAGGGCTCCATAGATCTCAGGGGAGTCTCTATAGTGTACTTCGTTTGAGGGGAGGATTGTTGAGGATTGTTAGAAGGGAGTCCCACGTTGGCTAATTAAGGGAATGATCATGAGTTTATAAGAATGGAATACTATCTCCATTAGTATGAGATCTTTTGGGAAAATCAAAAGCAAAGTGATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTATGAAGATTCGTGATTCCTAACCGTTACTTTCATGTTATTCAGGCCTCATGTTATTCAGGCCTCAAGTAGGCATAGCGAGAAGAATAAGGTTATGGGTTTTGAATTCAAGAGGCGTATGATCGCTATTGATTTTATATGCACGGATGACCTTATAAATTGAATAGAGAAAAGAACATTTAAAATGGACTAAACTTACTTTCACTTGTACGGACCATCCATTAAATTTTGATGTGCTGAAGGATTGGTTTTGGGGAGCCAGTTCTAATGAGTTGAATAGCTGCTTTCTTGACCCATGTCTTGAAAAGTTTTATTTTAACCGCCTGTTGTCACTAATATTGTCACATTTATCATACAAATCATTTCATGTTGTTCCCAAAGTAGTGTTGCAGTTACCTATCGAGAATTATTAAGAGGAGTAGTCTCACATTGGCTAATTAAGAGGAAGATCATGGATTTATAAGTAAAGAACACTCTCTATTGGTACGAGGCCTTTTAGGGAAACCACAAGTAAAGTCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTAGAGAGTCGTAGTTCTAAACATGGTATCAGAGTCATGCTCTTAACTTAGACATGTCAAAAGAATCCTCAAGTGTCGAAAAAAATAAGTTGTGAGTCTCGAAGGTGTAGTCAATAGTGACTCAAGTGTCGAATAGATGGTGTACTTTGTTTGAGGCTTTCAGAGATGGAGTGTCGAACCTTGATTAAGGGGAGGCCGTTCAAAAGTTTTAAAGAAGAAAGGTCTCAAGGGAGGCTTTATGGTGTATTTTGTTCGATGGGAGAATTGTTAAGAATTATTAAGAGGAGTATTCTCACACTGGCTAATTAAGAAGAAGATCATAAATTTATAAATTAGAACATTATCTCTTGGCATGAGGTTTTTCGGGAAACCAAAAACAAAGCCATGAGAACTTATGTTTAAAGTGAACAATATCGATTGTGGGGAGAGTTTTAGTTTCTAACATTACCTTCTTCCGTTGTCAGTGTGATAAAGTATTGCTTGTGCCTAAAGTATGAATGTCCTGTTTGCAGGTTGCAGGTGTAGAAATAAAAGGTTAAACCTTGTTGATGCTGGAAGAATTTTCTGGAGCTTTAAGCATGGATATCTCCCTCTCTAACCCCATCTCCACACTGCTATTATTCTAAATCACGGTGTACTACCTCTATTTTCCTTTGTTATCTTCTTGAGCCTGAAATTTGTGTTCCTTGCATGCCTTTCTTTTTAATATCACAAAAACCTTAAAAAACCCAAGCCAGTTGCATGAGCCTGCCACTGTGTATAAGGTTTTCATGGACCTACATAAAAAAGAACAAGTATACGATCATCTATCCAGGTCTCGAAAGACTAAAATGTAACCAATTTGAACTAGATTATATGTATACTTCGCTTGTGACCTTAGAATCTGAGTGCGAAGAATATGGCATTACTCTGATTCCACCAATTGATTTCATATGTGAAGAGGCTCCAAAGTCCTATGAAATCCAGACCAGCCGCGCTTATTTGTATGGTATATCGAAAGAATTCGCAAATGGATATGTATCTCCAAATCCGTCGACCACAAAAATGCAGTAAATGGATGGGGAAAGGTTAGTAGTCTCTTCAGTCAATTTTTGTTCACATGTAAATGTATTCATCTTATTTTCTAGATTTGTGACATTAAAAAGGGTGGTTTCTGTTAGCCAAAGAACTTTATTTCAATACCTATATATTTTCCCTGGGTGTTTGAGTGTTGCTGGCCGTGCTTTACCCTCTCGAATAAGGTCCCGTGAGAGGGGACTTCAGTTCTTAGTTGCAAAATGAAATAACAAATTATGGTTATAGAATGAGTTACTGTAAATTTAATTTTCAACTGGTACAAGTCATTAGTTGATGATTGTGTGAGCAGGTGAAAGAATAGCTGTTCCATCCTGCACCATTTGGGTCAAACCCCAGAAGTCTATTCTGCATTTAATGAGAAAAGAAATGGGACTACGGTTGGTGCAATCAAGGCGACTCGAACTCTTTGAGGTTAAACTTCTCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGCATTCATCAATCTAATTTCTAGTACTATACTAAAGATTTCTACTGTATTCATCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGTATTCACCATCTCATTTCTAGCACCATACTAAAGATTTCTACTGTAATCATCAATCTCATTTCTAGTAATATACCAGTATGGATTATTGCTACATTAATATGATGAAATTTTGTTATCATATATACCTGAAGCCTAAGACTTTTCATGCCCAGATGCCGACAACAACCTGTTTTACATCCCAGTATGTTATGAGTAAGGTGTGAAACCGACCATTTGAGAGGTGGGTGACAAATTGGACCATTGATGCAAAAAAATTTGATGAGAAGTAATGAAGCCCTGCAAGAAAATCCTCTTTGTGATATCTGTTCACAATCAGCAATTACTGATAGAAATTGAAATTCACGTTATGTATTTAATATTTACTATCTCTGTCAATATAACTCCTCAACTGATC

mRNA sequence

TTAGAATAATCCAATGGCGGGAACTCAAAGACGCTGAGAAATTCATCACAGGCTCTCGTAGCCGCCAAGAAAAAGCCACCAATATCGGCATTCCATTGGCCAATTGAATTGTTCATGGCGCCGGACGGAGTACCAGGTAGCGGCTCCTTCGTCAGTGTTGCCATTTTTCCGCATCTGGAAACTCATCTTCTATGCGGAGAGCCAAGACAGAGGCAGAGACAAGCGAATAGAGGGCGAACCAGTCTCTGAACCGATCGATGAGGGAGATGAGAGATGTTTGAAGGAACGATCGTTTTATCGGCTCAGAAGCTCGAAGTCTGTATGAGGTTGCAGGTGTAGAAATAAAAGGTTAAACCTTGTTGATGCTGGAAGAATTTTCTGGAGCTTTAAGCATGGATATCTCCCTCTCTAACCCCATCTCCACACTGCTATTATTCTAAATCACGAGGCTCCAAAGTCCTATGAAATCCAGACCAGCCGCGCTTATTTGTATGGTATATCGAAAGAATTCGCAAATGGATATGTATCTCCAAATCCGTCGACCACAAAAATGCAGTAAATGGATGGGGAAAGGTGAAAGAATAGCTGTTCCATCCTGCACCATTTGGGTCAAACCCCAGAAGTCTATTCTGCATTTAATGAGAAAAGAAATGGGACTACGGTTGGTGCAATCAAGGCGACTCGAACTCTTTGAGGTTAAACTTCTCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGCATTCATCAATCTAATTTCTAGTACTATACTAAAGATTTCTACTGTATTCATCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGTATTCACCATCTCATTTCTAGCACCATACTAAAGATTTCTACTGTAATCATCAATCTCATTTCTAGTAATATACCAGTATGGATTATTGCTACATTAATATGATGAAATTTTGTTATCATATATACCTGAAGCCTAAGACTTTTCATGCCCAGATGCCGACAACAACCTGTTTTACATCCCAGTATGTTATGAGTAAGGTGTGAAACCGACCATTTGAGAGGTGGGTGACAAATTGGACCATTGATGCAAAAAAATTTGATGAGAAGTAATGAAGCCCTGCAAGAAAATCCTCTTTGTGATATCTGTTCACAATCAGCAATTACTGATAGAAATTGAAATTCACGTTATGTATTTAATATTTACTATCTCTGTCAATATAACTCCTCAACTGATC

Coding sequence (CDS)

ATGAAATCCAGACCAGCCGCGCTTATTTGTATGGTATATCGAAAGAATTCGCAAATGGATATGTATCTCCAAATCCGTCGACCACAAAAATGCAGTAAATGGATGGGGAAAGGTGAAAGAATAGCTGTTCCATCCTGCACCATTTGGGTCAAACCCCAGAAGTCTATTCTGCATTTAATGAGAAAAGAAATGGGACTACGGTTGGTGCAATCAAGGCGACTCGAACTCTTTGAGGTTAAACTTCTCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGCATTCATCAATCTAATTTCTAGTACTATACTAAAGATTTCTACTGTATTCATCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGTATTCACCATCTCATTTCTAGCACCATACTAA

Protein sequence

MKSRPAALICMVYRKNSQMDMYLQIRRPQKCSKWMGKGERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFEVKLLNLISSTILKISTAFINLISSTILKISTVFINLISSTILKISTVFTISFLAPY

Homology

[Close]

BLAST of Cp4.1LG03g02690.1 vs. NCBI nr
Match: KAG6580501.1 (hypothetical protein SDJN03_20503, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166 bits (419), Expect = 1.39e-49
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 38  GERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFEVKLLNLISSTILKISTAFI 97
           GERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFEVKLLNLISSTILKIST FI
Sbjct: 64  GERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFEVKLLNLISSTILKISTVFI 123

Query: 98  NLISSTILKISTVFINLISSTILKISTVFTISFLAPY 134
           NLIS TILKISTVFINLISSTILKISTVFTISFLAPY
Sbjct: 124 NLISRTILKISTVFINLISSTILKISTVFTISFLAPY 160

[Close]

BLAST of Cp4.1LG03g02690.1 vs. NCBI nr
Match: KAG7017252.1 (hypothetical protein SDJN02_19115, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.2 bits (204), Expect = 8.37e-18
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 38 GERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFE 78
          GERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFE
Sbjct: 45 GERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFE 85

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g02690.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g02690.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580501.1	1.39e-49	97.94	hypothetical protein SDJN03_20503, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7017252.1	8.37e-18	100.00	hypothetical protein SDJN02_19115, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG03g02690.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g02690.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG03g02690	Cp4.1LG03g02690	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g02690.1:three_prime_utr:001	Cp4.1LG03g02690.1:three_prime_utr:001	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g02690.1:exon:004	Cp4.1LG03g02690.1:exon:004	exon
Cp4.1LG03g02690.1:exon:003	Cp4.1LG03g02690.1:exon:003	exon
Cp4.1LG03g02690.1:exon:002	Cp4.1LG03g02690.1:exon:002	exon
Cp4.1LG03g02690.1:exon:001	Cp4.1LG03g02690.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g02690.1:cds:002	Cp4.1LG03g02690.1:cds:002	CDS
Cp4.1LG03g02690.1:cds:001	Cp4.1LG03g02690.1:cds:001	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g02690.1:five_prime_utr:003	Cp4.1LG03g02690.1:five_prime_utr:003	five_prime_UTR
Cp4.1LG03g02690.1:five_prime_utr:002	Cp4.1LG03g02690.1:five_prime_utr:002	five_prime_UTR
Cp4.1LG03g02690.1:five_prime_utr:001	Cp4.1LG03g02690.1:five_prime_utr:001	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g02690.1	Cp4.1LG03g02690.1-protein	polypeptide