Cp4.1LG03g02690 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g02690
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG03: 420876 .. 425007 (-)
RNA-Seq Expression	Cp4.1LG03g02690
Synteny	Cp4.1LG03g02690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGAATAATCCAATGGCGGGAACTCAAAGACGCTGAGAAATTCATCACAGGCTCTCGTAGCCGCCAAGAAAAAGCCACCAATATCGGCATTCCATTGGCCAATTGAATTGTTCATGGCGCCGGACGGAGTACCAGGTAGCGGCTCCTTCGTCAGTGTTGCCATTTTTCCGCATCTGGAAACTCATCTTCTATGCGGAGAGCCAAGACAGAGGCAGAGACAAGCGAATAGAGGGCGAACCAGTCTCTGAACCGATCGATGAGGGAGATGAGAGATGTTTGAAGGAACGATCGTTTTATCGGCTCAGAAGCTCGAAGTCTGTATGAGGTCAGAAAGTTATTGTGAAATTATGTGATTGAGTCCTGTGATATCGTATATGCCTTCTTCCACGGATGGCTATTTATTTCGGATTCACTAGAAGCACCTTTTTTAGTTTTGGCCACTCACTTAATCGATGTCTGGAATGTACTTATAGCTTGATTCACTTTCAATAAGAGGCAAATACACGCTACGTTTTGCTTGTAACTGAAGATTAGGAACCGTGTGAATTCGATTGGGCATAAAGTGCAGAAGAAATTTTGCATAAAGGAGTAGGAGAGGGATAAATAATTGAAAAGAAAGAAGGTTTATTAGAAAATTAGAAAGATAGACACTTTTGAAAGAGAAGGCTCTCACACACTCTCTAATCCTCTATTACTTGTTTTTTAAGCGACGCTGTATATTAGGTATACCGTGGGAAATTATGTTATCAGACGTTTAAGGTTTTTGCTTCCTACACAAATTAGTTTGTCACGATGAACAATAGGTTGATGCTTTATTATAAGATAAAGGATTAAATGAAGATATTGTCCGGGAGTTCTGGCATGCAGGCAGGTGTAAGCTGTAAAATTTCAGGTGAAGGTCAGAAAATAAGGCATGGGCTATTTGACTATACTCCTAGATACTGTTCAGATCATTGGAAGGGAGTGTGTTTATAAGTAAGGAATACTATATCCAGGTATGAGGCCTTTTAGGGGGAGTGTGTTTATAAGTAAGGAATACTATATCCAGGTATGAGGCCTTTTAGGGAAACTAAAAACAAAGCCATGAGACTTATGTTCAAAGTGGACAATATCATATCATTGTGGAGATTTGTGATTCCTAACATGATATCAGAGTCATGCCCTTAACTTAGTCATGTCAATAGAATTCTCAAATCAATAGAATTCTCAAATGTCGAACAAATAAGTTGGGACCCTAGAAGGTGTAGTCAAAAGTGACTCAAGTGTCGAACAAAAGGTGTACTATGTTTCAGGACTCTAGAGAAAGGAGTCGAGCCTCAATTAAGGGGAGATTGTTCGAGGGCTCCATAGATCTCAGGGGAGTCTCTATAGTGTACTTCGTTTGAGGGGAGGATTGTTGAGGATTGTTAGAAGGGAGTCCCACGTTGGCTAATTAAGGGAATGATCATGAGTTTATAAGAATGGAATACTATCTCCATTAGTATGAGATCTTTTGGGAAAATCAAAAGCAAAGTGATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTATGAAGATTCGTGATTCCTAACCGTTACTTTCATGTTATTCAGGCCTCATGTTATTCAGGCCTCAAGTAGGCATAGCGAGAAGAATAAGGTTATGGGTTTTGAATTCAAGAGGCGTATGATCGCTATTGATTTTATATGCACGGATGACCTTATAAATTGAATAGAGAAAAGAACATTTAAAATGGACTAAACTTACTTTCACTTGTACGGACCATCCATTAAATTTTGATGTGCTGAAGGATTGGTTTTGGGGAGCCAGTTCTAATGAGTTGAATAGCTGCTTTCTTGACCCATGTCTTGAAAAGTTTTATTTTAACCGCCTGTTGTCACTAATATTGTCACATTTATCATACAAATCATTTCATGTTGTTCCCAAAGTAGTGTTGCAGTTACCTATCGAGAATTATTAAGAGGAGTAGTCTCACATTGGCTAATTAAGAGGAAGATCATGGATTTATAAGTAAAGAACACTCTCTATTGGTACGAGGCCTTTTAGGGAAACCACAAGTAAAGTCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTAGAGAGTCGTAGTTCTAAACATGGTATCAGAGTCATGCTCTTAACTTAGACATGTCAAAAGAATCCTCAAGTGTCGAAAAAAATAAGTTGTGAGTCTCGAAGGTGTAGTCAATAGTGACTCAAGTGTCGAATAGATGGTGTACTTTGTTTGAGGCTTTCAGAGATGGAGTGTCGAACCTTGATTAAGGGGAGGCCGTTCAAAAGTTTTAAAGAAGAAAGGTCTCAAGGGAGGCTTTATGGTGTATTTTGTTCGATGGGAGAATTGTTAAGAATTATTAAGAGGAGTATTCTCACACTGGCTAATTAAGAAGAAGATCATAAATTTATAAATTAGAACATTATCTCTTGGCATGAGGTTTTTCGGGAAACCAAAAACAAAGCCATGAGAACTTATGTTTAAAGTGAACAATATCGATTGTGGGGAGAGTTTTAGTTTCTAACATTACCTTCTTCCGTTGTCAGTGTGATAAAGTATTGCTTGTGCCTAAAGTATGAATGTCCTGTTTGCAGGTTGCAGGTGTAGAAATAAAAGGTTAAACCTTGTTGATGCTGGAAGAATTTTCTGGAGCTTTAAGCATGGATATCTCCCTCTCTAACCCCATCTCCACACTGCTATTATTCTAAATCACGGTGTACTACCTCTATTTTCCTTTGTTATCTTCTTGAGCCTGAAATTTGTGTTCCTTGCATGCCTTTCTTTTTAATATCACAAAAACCTTAAAAAACCCAAGCCAGTTGCATGAGCCTGCCACTGTGTATAAGGTTTTCATGGACCTACATAAAAAAGAACAAGTATACGATCATCTATCCAGGTCTCGAAAGACTAAAATGTAACCAATTTGAACTAGATTATATGTATACTTCGCTTGTGACCTTAGAATCTGAGTGCGAAGAATATGGCATTACTCTGATTCCACCAATTGATTTCATATGTGAAGAGGCTCCAAAGTCCTATGAAATCCAGACCAGCCGCGCTTATTTGTATGGTATATCGAAAGAATTCGCAAATGGATATGTATCTCCAAATCCGTCGACCACAAAAATGCAGTAAATGGATGGGGAAAGGTTAGTAGTCTCTTCAGTCAATTTTTGTTCACATGTAAATGTATTCATCTTATTTTCTAGATTTGTGACATTAAAAAGGGTGGTTTCTGTTAGCCAAAGAACTTTATTTCAATACCTATATATTTTCCCTGGGTGTTTGAGTGTTGCTGGCCGTGCTTTACCCTCTCGAATAAGGTCCCGTGAGAGGGGACTTCAGTTCTTAGTTGCAAAATGAAATAACAAATTATGGTTATAGAATGAGTTACTGTAAATTTAATTTTCAACTGGTACAAGTCATTAGTTGATGATTGTGTGAGCAGGTGAAAGAATAGCTGTTCCATCCTGCACCATTTGGGTCAAACCCCAGAAGTCTATTCTGCATTTAATGAGAAAAGAAATGGGACTACGGTTGGTGCAATCAAGGCGACTCGAACTCTTTGAGGTTAAACTTCTCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGCATTCATCAATCTAATTTCTAGTACTATACTAAAGATTTCTACTGTATTCATCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGTATTCACCATCTCATTTCTAGCACCATACTAAAGATTTCTACTGTAATCATCAATCTCATTTCTAGTAATATACCAGTATGGATTATTGCTACATTAATATGATGAAATTTTGTTATCATATATACCTGAAGCCTAAGACTTTTCATGCCCAGATGCCGACAACAACCTGTTTTACATCCCAGTATGTTATGAGTAAGGTGTGAAACCGACCATTTGAGAGGTGGGTGACAAATTGGACCATTGATGCAAAAAAATTTGATGAGAAGTAATGAAGCCCTGCAAGAAAATCCTCTTTGTGATATCTGTTCACAATCAGCAATTACTGATAGAAATTGAAATTCACGTTATGTATTTAATATTTACTATCTCTGTCAATATAACTCCTCAACTGATC

mRNA sequence

TTAGAATAATCCAATGGCGGGAACTCAAAGACGCTGAGAAATTCATCACAGGCTCTCGTAGCCGCCAAGAAAAAGCCACCAATATCGGCATTCCATTGGCCAATTGAATTGTTCATGGCGCCGGACGGAGTACCAGGTAGCGGCTCCTTCGTCAGTGTTGCCATTTTTCCGCATCTGGAAACTCATCTTCTATGCGGAGAGCCAAGACAGAGGCAGAGACAAGCGAATAGAGGGCGAACCAGTCTCTGAACCGATCGATGAGGGAGATGAGAGATGTTTGAAGGAACGATCGTTTTATCGGCTCAGAAGCTCGAAGTCTGTATGAGGTTGCAGGTGTAGAAATAAAAGGTTAAACCTTGTTGATGCTGGAAGAATTTTCTGGAGCTTTAAGCATGGATATCTCCCTCTCTAACCCCATCTCCACACTGCTATTATTCTAAATCACGAGGCTCCAAAGTCCTATGAAATCCAGACCAGCCGCGCTTATTTGTATGGTATATCGAAAGAATTCGCAAATGGATATGTATCTCCAAATCCGTCGACCACAAAAATGCAGTAAATGGATGGGGAAAGGTGAAAGAATAGCTGTTCCATCCTGCACCATTTGGGTCAAACCCCAGAAGTCTATTCTGCATTTAATGAGAAAAGAAATGGGACTACGGTTGGTGCAATCAAGGCGACTCGAACTCTTTGAGGTTAAACTTCTCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGCATTCATCAATCTAATTTCTAGTACTATACTAAAGATTTCTACTGTATTCATCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGTATTCACCATCTCATTTCTAGCACCATACTAAAGATTTCTACTGTAATCATCAATCTCATTTCTAGTAATATACCAGTATGGATTATTGCTACATTAATATGATGAAATTTTGTTATCATATATACCTGAAGCCTAAGACTTTTCATGCCCAGATGCCGACAACAACCTGTTTTACATCCCAGTATGTTATGAGTAAGGTGTGAAACCGACCATTTGAGAGGTGGGTGACAAATTGGACCATTGATGCAAAAAAATTTGATGAGAAGTAATGAAGCCCTGCAAGAAAATCCTCTTTGTGATATCTGTTCACAATCAGCAATTACTGATAGAAATTGAAATTCACGTTATGTATTTAATATTTACTATCTCTGTCAATATAACTCCTCAACTGATC

Coding sequence (CDS)

ATGAAATCCAGACCAGCCGCGCTTATTTGTATGGTATATCGAAAGAATTCGCAAATGGATATGTATCTCCAAATCCGTCGACCACAAAAATGCAGTAAATGGATGGGGAAAGGTGAAAGAATAGCTGTTCCATCCTGCACCATTTGGGTCAAACCCCAGAAGTCTATTCTGCATTTAATGAGAAAAGAAATGGGACTACGGTTGGTGCAATCAAGGCGACTCGAACTCTTTGAGGTTAAACTTCTCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGCATTCATCAATCTAATTTCTAGTACTATACTAAAGATTTCTACTGTATTCATCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGTATTCACCATCTCATTTCTAGCACCATACTAA

Protein sequence

MKSRPAALICMVYRKNSQMDMYLQIRRPQKCSKWMGKGERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFEVKLLNLISSTILKISTAFINLISSTILKISTVFINLISSTILKISTVFTISFLAPY

Homology

[Close]

BLAST of Cp4.1LG03g02690 vs. NCBI nr
Match: KAG6580501.1 (hypothetical protein SDJN03_20503, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166 bits (419), Expect = 1.39e-49
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 38  GERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFEVKLLNLISSTILKISTAFI 97
           GERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFEVKLLNLISSTILKIST FI
Sbjct: 64  GERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFEVKLLNLISSTILKISTVFI 123

Query: 98  NLISSTILKISTVFINLISSTILKISTVFTISFLAPY 134
           NLIS TILKISTVFINLISSTILKISTVFTISFLAPY
Sbjct: 124 NLISRTILKISTVFINLISSTILKISTVFTISFLAPY 160

[Close]

BLAST of Cp4.1LG03g02690 vs. NCBI nr
Match: KAG7017252.1 (hypothetical protein SDJN02_19115, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.2 bits (204), Expect = 8.37e-18
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 38 GERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFE 78
          GERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFE
Sbjct: 45 GERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFE 85

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g02690 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g02690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580501.1	1.39e-49	97.94	hypothetical protein SDJN03_20503, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7017252.1	8.37e-18	100.00	hypothetical protein SDJN02_19115, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cp4.1LG03g02690 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g02690 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g02690.1	Cp4.1LG03g02690.1	mRNA