CmoCh19G001000.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G001000.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionactin-depolymerizing factor-like
LocationCmo_Chr19: 564108 .. 567411 (-)
Sequence length1105
RNA-Seq ExpressionCmoCh19G001000.1
SyntenyCmoCh19G001000.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGGATTAGCCATTGGGTCTCATTTCCTTTCCCTTTCTCTTCTTTCTATATCTTCTGCCTCTGGTTCTTGTGCCTACCATCTCTGATCTTTCTTCTCCTCCTCCCTTTGCTTAAGCTTCTTAATCGCCGCCGCTTCTCCGATCATCATGTCGTTCAGAGGCCTCCGACGGGTATCTTTATGTTCTTACTTTCATGTTTTCTTTGCTTTTAACTCAACTACATGTCAACTGGGAAACTGGGTTTTGTTCTGATTTGATGCTGATTATGTGTATCTCTTGATTCTTAACCCACTTTTGATGTTTGAGAACTACCCATCTTGTGGATCCTGCATGTATGTATTTTGTGACCTTAATTTCTTGCTTTGTTCTGCAAATATGGTGTGTTTTGGTGAAAAATGTTGGATTAGGGAGGTTATGCTATGGCTCTGAAAGCTTTGATTTAAAGGGAGGAAGTTATGATCCTTACTGATCAGGTTTTGGAGGTGGAGGGTGGGGTCTGATTCTGTGCCAGTGTCTTCTTCTTTGTTCGTTTTGTAATTTCTTTTTAGAAACTTTAGGATTATAAAACTTGAATCTATTTGGGATCTCGGGATTTTGTTTACTTTGTTGGTATATGTGAGATCCCACGTGGATTGGAGAGGAGAACGAGTGTTACTGAGGACGTTGGGCTTCTAAAGGAGGTGGATTGTGAGATCCCACATCAATTGGAGAGGGGAATGAGTGTCAGCGAGGATGCTGGGCTCCTAAAGGGGGTGGATTGTGAAATCCCACATCGATTAGAGAGGGGAACGAGTGTCAGCGAGGACGCTGGGCTCTAAAAGGGGTGGATTGTGAGATCCCATATCGGTTGGAGAAGGGAACGAGTGCCAACGAGGACGCTGAACTCCGAGAGGGGGTGGATTGTGAGATCCCACATCGAATGTAGAGGGGGGCGATTGTCAGTGAGGACGCTGGGCCCTAAAAGGGAGTGGATTTTGAGATCCCACATCGGTTGGAGAGGGAAACGAGTGTCAGCGAGGACGCTGGGCCCTGAAAGGGAGTGGATTATAAGATCCCATATCAGTTGGAGAGGGGAACAAGTGCTAACGAGGACGCTGAACTCCAAGAGGGGGTGGATTGTGAGATCCCACGTCGATTGTAGAGGGGGACGATTGTCAGTGAGGATGTTGGGCCCTAAAAAGGGAGTGGATTGTGAGATCCCACATCGGTTGGAGAAGGGAACAAGTGTCAGTGAGGACGTTGGGCCCTGAAAGGGAGTGGATTGATCCCATATTGGTTGGAGTGTCAGCGAGGACACTGGATCCTAAAAGGGGGTGGATTGTGAGATCCCACATCGATTGGAGAGGGGAACAAATGCCAGCGAGGACGTTGGGCCCTGAAAAGGGGTGAATTGTGAGATCCCACATCGGTTGAAGAAGGGAACGAATCATTCTTCATAAGAGTGTAGAAACCTCTCCTTAGCAAACGCGTTTTAAAACTTGGAGGCTGTTATTGTTATTTGTCTATATGATTCCTCCATGGACTTCTATTTGATTGCTTGACATGTATGAATTACCTTTGCAGCAAAACACTTTATCTGCAATGGGTGTGAATGAACACACCAAGAAAATATTTTCTGAACTACAGAGAAAGAAAATGTATCGATACGTGATCTTTAAGGTCGATGAAAAGAAACGAGAGGTGGTGGTTGACAAGATTGGCAGTCCTGCAGAGAGCTATGAAGATTTCACTGCTGCTCTGCCCGACAACGATTGTCGCTACGCTGTCTATGATTTTGATTTCGTGACATCCGACAACTGCCAGAAGAGCAAGATATTTTTCATAGCATGGTTAGCTTTTACCTATCATCAACTTACTCTTATCTTTCTCATTGCCATGTTAATGCCTACTCGATATACATTGTTCATTGGGTTGCTCCACAACACCGCATTGAGATCCCATATCGGTTCGAGAATGAAGCATTCCTTATAAGGGTGTGGAAAACTTCTCTCTAGCAAATGCGTTTTACAACCGTGAGGCTGACGGTGATACGTAACAGGCCAAAGCAGACAATATCTGCTAGCTGTGTGCTTGAGCGGTTACAAATGGTATCAAAGTCAGACATCGGGTAGTGTGTCAGCGAGGACAATGGGGCCCCCAAAATGGGTGGATTGTGAGATCCCACGTCGGTTGGAGAGAGAAACGAAGCATTCCTTATAAGGGTGTGTAAACCTCTCCCTAGTAGACGCGTTTTAGAATTGTGAGGCTGACGGCAATACGTAACAGACCAAAACGGACAATATCTACTAGCGATAGGCTTGAGTTGTTACAAATGGCATCAGAGACAGACATCGGGCGGTGCCAAGGGAGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGGAACGAAACATTCTTTATAAGGGTGTGAAAAACCTCTCCCTAGACGTGTTTTAAAACCATGAGGCTGACAGTGATATGTAACGGGCCAAAGCAGACAATATCTGCTAGTGGTGGGCTTGGGCTATTACAAAAACGTTAGTTATCCGAAGATCAAAAGGTTTTGATCCTATGACCACCTGATCACCTGCGACTATTTAAAATCAAACTACAATTTCTAATCTCTAGGCACTAGGATTCTTCATGTTCATAGTCACTTGGTTATTCATGGATTATTCTTCACACTAGATTATTGTACTTCAGGTCTCCAGCTAGTTCACGAATCCGTGCTAAGATGCTCTATGCGACATCGAAGGACAGCTTTCGACACGATCTCAATGGCATACACTACGAGATTCAAGCTACCGACCCTGCAGAGATGGACCTGGATGTGATCAGAGACCGTGCTCAATGAACAGTCTCGGTTAGTTTAATTTGTTGTTCTCGTCGGGGTAAACCAGCTTGTATTTTGAATACTCATGAATCGGTTTATCCCCGTTTCGATATATGTAAAACCGATCCCTTGGCGAATGAAAACGTTGCACAAAACCGTAAAATAAACTGACATCTGTAGAATGCTGATATCTGGTTGATCGACATGATGTTGATGTCTGGTTGCTATGGCTGCTTCTCAGATGTAGATATGTTTGTAATAGAAAATGTTTAGATATCTATGGAACGTATTGTCATTGGTGTCTCAATATCTCTTGGGTTTCTTCATATAACCTATAGATATTGCATTTTATGATGTGAAATGAAGAACACTACCTGTTACCGAACATAGGTTGTAATAGCCCAAGTCCACCGCTAGCAGATATTGTCCTTAGCCTGTTATGTATTGTTGTCAACCTCACGATTTTTAAAACGTGTTTACTAGGGAGGGG

mRNA sequence

GCAGGATTAGCCATTGGGTCTCATTTCCTTTCCCTTTCTCTTCTTTCTATATCTTCTGCCTCTGGTTCTTGTGCCTACCATCTCTGATCTTTCTTCTCCTCCTCCCTTTGCTTAAGCTTCTTAATCGCCGCCGCTTCTCCGATCATCATGTCGTTCAGAGGCCTCCGACGGCAAAACACTTTATCTGCAATGGGTGTGAATGAACACACCAAGAAAATATTTTCTGAACTACAGAGAAAGAAAATGTATCGATACGTGATCTTTAAGGTCGATGAAAAGAAACGAGAGGTGGTGGTTGACAAGATTGGCAGTCCTGCAGAGAGCTATGAAGATTTCACTGCTGCTCTGCCCGACAACGATTGTCGCTACGCTGTCTATGATTTTGATTTCGTGACATCCGACAACTGCCAGAAGAGCAAGATATTTTTCATAGCATGGTTAGCTTTTACCTATCATCAACTTACTCTTATCTTTCTCATTGCCATGTCTCCAGCTAGTTCACGAATCCGTGCTAAGATGCTCTATGCGACATCGAAGGACAGCTTTCGACACGATCTCAATGGCATACACTACGAGATTCAAGCTACCGACCCTGCAGAGATGGACCTGGATGTGATCAGAGACCGTGCTCAATGAACAGTCTCGGTTAGTTTAATTTGTTGTTCTCGTCGGGGTAAACCAGCTTGTATTTTGAATACTCATGAATCGGTTTATCCCCGTTTCGATATATGTAAAACCGATCCCTTGGCGAATGAAAACGTTGCACAAAACCGTAAAATAAACTGACATCTGTAGAATGCTGATATCTGGTTGATCGACATGATGTTGATGTCTGGTTGCTATGGCTGCTTCTCAGATGTAGATATGTTTGTAATAGAAAATGTTTAGATATCTATGGAACGTATTGTCATTGGTGTCTCAATATCTCTTGGGTTTCTTCATATAACCTATAGATATTGCATTTTATGATGTGAAATGAAGAACACTACCTGTTACCGAACATAGGTTGTAATAGCCCAAGTCCACCGCTAGCAGATATTGTCCTTAGCCTGTTATGTATTGTTGTCAACCTCACGATTTTTAAAACGTGTTTACTAGGGAGGGG

Coding sequence (CDS)

ATGTCGTTCAGAGGCCTCCGACGGCAAAACACTTTATCTGCAATGGGTGTGAATGAACACACCAAGAAAATATTTTCTGAACTACAGAGAAAGAAAATGTATCGATACGTGATCTTTAAGGTCGATGAAAAGAAACGAGAGGTGGTGGTTGACAAGATTGGCAGTCCTGCAGAGAGCTATGAAGATTTCACTGCTGCTCTGCCCGACAACGATTGTCGCTACGCTGTCTATGATTTTGATTTCGTGACATCCGACAACTGCCAGAAGAGCAAGATATTTTTCATAGCATGGTTAGCTTTTACCTATCATCAACTTACTCTTATCTTTCTCATTGCCATGTCTCCAGCTAGTTCACGAATCCGTGCTAAGATGCTCTATGCGACATCGAAGGACAGCTTTCGACACGATCTCAATGGCATACACTACGAGATTCAAGCTACCGACCCTGCAGAGATGGACCTGGATGTGATCAGAGACCGTGCTCAATGA

Protein sequence

MSFRGLRRQNTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESYEDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRIRAKMLYATSKDSFRHDLNGIHYEIQATDPAEMDLDVIRDRAQ
Homology
[Close]
BLAST of CmoCh19G001000.1 vs. ExPASy Swiss-Prot
Match: Q8SAG3 (Actin-depolymerizing factor OS=Vitis vinifera OX=29760 PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.9e-54
Identity = 108/161 (67.08%), Postives = 128/161 (79.50%), Query Frame = 0 

Query: 1   MSFRGLRRQNTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESY 60
           MSFRGL   N  S MGV +H+K  F EL+RKK++RYVIFK+DEKK+EVVV+K G PAES+
Sbjct: 1   MSFRGL---NASSGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESF 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRI 120
           ++F AALP+NDCRYAVYDFDFVTS+NCQKSKIFFIAW                SP SSRI
Sbjct: 61  DEFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAW----------------SPDSSRI 120

Query: 121 RAKMLYATSKDSFRHDLNGIHYEIQATDPAEMDLDVIRDRA 162
           RAKMLYATSK+ FR +L+G+HYEIQATDP EMDL+V+R+RA
Sbjct: 121 RAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLRERA 142

[Close]
BLAST of CmoCh19G001000.1 vs. ExPASy Swiss-Prot
Match: Q9ZSK2 (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana OX=3702 GN=ADF6 PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.8e-52
Identity = 102/161 (63.35%), Postives = 123/161 (76.40%), Query Frame = 0 

Query: 1   MSFRGLRRQNTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESY 60
           MSFRGL R N +S MGV + +K  F ELQRKK +RYV+FK+DE K+EVVV+K G+P ESY
Sbjct: 1   MSFRGLSRPNAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRI 120
           +DF A+LPDNDCRYAVYDFDFVTS+NCQKSKIFF AW                SP++S I
Sbjct: 61  DDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAW----------------SPSTSGI 120

Query: 121 RAKMLYATSKDSFRHDLNGIHYEIQATDPAEMDLDVIRDRA 162
           RAK+LY+TSKD    +L GIHYEIQATDP E+DL+V+R+RA
Sbjct: 121 RAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERA 145

[Close]
BLAST of CmoCh19G001000.1 vs. ExPASy Swiss-Prot
Match: Q2QLT8 (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF11 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.6e-46
Identity = 90/154 (58.44%), Postives = 117/154 (75.97%), Query Frame = 0 

Query: 8   RQNTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESYEDFTAAL 67
           R N  S +GV    K+ F ELQRKK +RYVIFK+D+K +EVVV+K GS  ES++DF  +L
Sbjct: 7   RANASSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSL 66

Query: 68  PDNDCRYAVYDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRIRAKMLYA 127
           P++DCRYA+YDFDFVT +NCQKSKIFF+AW                SP+ SRIRAKMLYA
Sbjct: 67  PESDCRYAIYDFDFVTEENCQKSKIFFVAW----------------SPSVSRIRAKMLYA 126

Query: 128 TSKDSFRHDLNGIHYEIQATDPAEMDLDVIRDRA 162
           TSK+ FR +L+G+HYEIQATDP+E+D++++R+RA
Sbjct: 127 TSKERFRRELDGVHYEIQATDPSELDIELLRERA 144

[Close]
BLAST of CmoCh19G001000.1 vs. ExPASy Swiss-Prot
Match: Q9AY76 (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF2 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.4e-44
Identity = 89/152 (58.55%), Postives = 113/152 (74.34%), Query Frame = 0 

Query: 10  NTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESYEDFTAALPD 69
           N  S MGV    +  F ELQ KK +RYVIFK++EK+++VVV+K G+  ESY+DF A+LP+
Sbjct: 9   NASSGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDDFLASLPE 68

Query: 70  NDCRYAVYDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRIRAKMLYATS 129
           NDCRYA+YDFDFVT +N QKSKIFFIAW                SP++SRIRAKMLY+TS
Sbjct: 69  NDCRYALYDFDFVTGENVQKSKIFFIAW----------------SPSTSRIRAKMLYSTS 128

Query: 130 KDSFRHDLNGIHYEIQATDPAEMDLDVIRDRA 162
           KD  + +L+G HYEIQATDP E+DL+V+R+RA
Sbjct: 129 KDRIKQELDGFHYEIQATDPTEVDLEVLRERA 144

[Close]
BLAST of CmoCh19G001000.1 vs. ExPASy Swiss-Prot
Match: Q337A5 (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF10 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 7.6e-43
Identity = 83/145 (57.24%), Postives = 112/145 (77.24%), Query Frame = 0 

Query: 17  VNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESYEDFTAALPDNDCRYAV 76
           V E +K  F EL+R+K++RYVIFK+D+++ E+VV+K G+P ESY+DFTA+LP +DCRYAV
Sbjct: 20  VPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLPADDCRYAV 79

Query: 77  YDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRIRAKMLYATSKDSFRHD 136
           YD DFV+ DNC+KSKIFFI+W                SP+ SRIRAK +YA S++ FRH+
Sbjct: 80  YDLDFVSDDNCRKSKIFFISW----------------SPSVSRIRAKTIYAVSRNQFRHE 139

Query: 137 LNGIHYEIQATDPAEMDLDVIRDRA 162
           L+G+H+EIQATDP +MDL+V+R RA
Sbjct: 140 LDGVHFEIQATDPDDMDLEVLRGRA 148

[Close]
BLAST of CmoCh19G001000.1 vs. ExPASy TrEMBL
Match: A0A6J1HST9 (actin-depolymerizing factor-like OS=Cucurbita maxima OX=3661 GN=LOC111467118 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.5e-73
Identity = 146/162 (90.12%), Postives = 146/162 (90.12%), Query Frame = 0 

Query: 1   MSFRGLRRQNTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESY 60
           MSFRGLRRQNTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESY
Sbjct: 1   MSFRGLRRQNTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRI 120
           EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAW                SPASSRI
Sbjct: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAW----------------SPASSRI 120

Query: 121 RAKMLYATSKDSFRHDLNGIHYEIQATDPAEMDLDVIRDRAQ 163
           RAKMLYATSKDSFRHDLNGIHYEIQATDPAEMDLDVIRDRAQ
Sbjct: 121 RAKMLYATSKDSFRHDLNGIHYEIQATDPAEMDLDVIRDRAQ 146

[Close]
BLAST of CmoCh19G001000.1 vs. ExPASy TrEMBL
Match: A0A6J1HGI8 (actin-depolymerizing factor-like OS=Cucurbita moschata OX=3662 GN=LOC111464091 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.5e-73
Identity = 146/162 (90.12%), Postives = 146/162 (90.12%), Query Frame = 0 

Query: 1   MSFRGLRRQNTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESY 60
           MSFRGLRRQNTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESY
Sbjct: 1   MSFRGLRRQNTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRI 120
           EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAW                SPASSRI
Sbjct: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAW----------------SPASSRI 120

Query: 121 RAKMLYATSKDSFRHDLNGIHYEIQATDPAEMDLDVIRDRAQ 163
           RAKMLYATSKDSFRHDLNGIHYEIQATDPAEMDLDVIRDRAQ
Sbjct: 121 RAKMLYATSKDSFRHDLNGIHYEIQATDPAEMDLDVIRDRAQ 146

[Close]
BLAST of CmoCh19G001000.1 vs. ExPASy TrEMBL
Match: A0A1S3BHG1 (actin-depolymerizing factor OS=Cucumis melo OX=3656 GN=LOC103489879 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.8e-70
Identity = 140/162 (86.42%), Postives = 145/162 (89.51%), Query Frame = 0 

Query: 1   MSFRGLRRQNTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESY 60
           MSFRGLRRQNTLSAMGVNEHTKK FSELQRKKMYRYVIFKVDEKKREVVVDKIG+PAESY
Sbjct: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRI 120
           EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAW                SPASSRI
Sbjct: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAW----------------SPASSRI 120

Query: 121 RAKMLYATSKDSFRHDLNGIHYEIQATDPAEMDLDVIRDRAQ 163
           RAKMLYATSKD+FRH+L+GIHYEIQATDPAEMDL+VIRDRAQ
Sbjct: 121 RAKMLYATSKDNFRHELDGIHYEIQATDPAEMDLEVIRDRAQ 146

[Close]
BLAST of CmoCh19G001000.1 vs. ExPASy TrEMBL
Match: A0A6J1K588 (actin-depolymerizing factor-like OS=Cucurbita maxima OX=3661 GN=LOC111491296 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.8e-70
Identity = 140/162 (86.42%), Postives = 145/162 (89.51%), Query Frame = 0 

Query: 1   MSFRGLRRQNTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESY 60
           MSFRGLRRQNTLSAMGVNEHTKK FSELQRKKMYRYVIFKVDEKKREVVVDKIG+PAESY
Sbjct: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRI 120
           EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAW                SPASSRI
Sbjct: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAW----------------SPASSRI 120

Query: 121 RAKMLYATSKDSFRHDLNGIHYEIQATDPAEMDLDVIRDRAQ 163
           RAKMLYATSKD+FRH+L+GIHYEIQATDPAEMDL+VIRDRAQ
Sbjct: 121 RAKMLYATSKDNFRHELDGIHYEIQATDPAEMDLEVIRDRAQ 146

[Close]
BLAST of CmoCh19G001000.1 vs. ExPASy TrEMBL
Match: A0A6J1EY99 (actin-depolymerizing factor-like OS=Cucurbita moschata OX=3662 GN=LOC111437311 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.8e-70
Identity = 140/162 (86.42%), Postives = 145/162 (89.51%), Query Frame = 0 

Query: 1   MSFRGLRRQNTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESY 60
           MSFRGLRRQNTLSAMGVNEHTKK FSELQRKKMYRYVIFKVDEKKREVVVDKIG+PAESY
Sbjct: 1   MSFRGLRRQNTLSAMGVNEHTKKTFSELQRKKMYRYVIFKVDEKKREVVVDKIGNPAESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRI 120
           EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAW                SPASSRI
Sbjct: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAW----------------SPASSRI 120

Query: 121 RAKMLYATSKDSFRHDLNGIHYEIQATDPAEMDLDVIRDRAQ 163
           RAKMLYATSKD+FRH+L+GIHYEIQATDPAEMDL+VIRDRAQ
Sbjct: 121 RAKMLYATSKDNFRHELDGIHYEIQATDPAEMDLEVIRDRAQ 146

[Close]
BLAST of CmoCh19G001000.1 vs. TAIR 10
Match: AT2G31200.1 (actin depolymerizing factor 6 )

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-53
Identity = 102/161 (63.35%), Postives = 123/161 (76.40%), Query Frame = 0 

Query: 1   MSFRGLRRQNTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESY 60
           MSFRGL R N +S MGV + +K  F ELQRKK +RYV+FK+DE K+EVVV+K G+P ESY
Sbjct: 1   MSFRGLSRPNAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESY 60

Query: 61  EDFTAALPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRI 120
           +DF A+LPDNDCRYAVYDFDFVTS+NCQKSKIFF AW                SP++S I
Sbjct: 61  DDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAW----------------SPSTSGI 120

Query: 121 RAKMLYATSKDSFRHDLNGIHYEIQATDPAEMDLDVIRDRA 162
           RAK+LY+TSKD    +L GIHYEIQATDP E+DL+V+R+RA
Sbjct: 121 RAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERA 145

[Close]
BLAST of CmoCh19G001000.1 vs. TAIR 10
Match: AT4G00680.1 (actin depolymerizing factor 8 )

HSP 1 Score: 172.6 bits (436), Expect = 2.7e-43
Identity = 80/151 (52.98%), Postives = 112/151 (74.17%), Query Frame = 0 

Query: 10  NTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESYEDFTAALPD 69
           N+ S M VN+  K  F EL+ K+ YR+++FK+DEK ++V ++K+G+P E+Y+DFT+++PD
Sbjct: 3   NSASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPD 62

Query: 70  NDCRYAVYDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRIRAKMLYATS 129
           ++CRYAVYDFDF T DNCQKSKIFFIAW                SP +SR+R+KMLYA+S
Sbjct: 63  DECRYAVYDFDFTTEDNCQKSKIFFIAW----------------SPDTSRVRSKMLYASS 122

Query: 130 KDSFRHDLNGIHYEIQATDPAEMDLDVIRDR 161
           KD F+ ++ GI  E+QATDP+EM LD+I+ R
Sbjct: 123 KDRFKREMEGIQVELQATDPSEMSLDIIKGR 137

[Close]
BLAST of CmoCh19G001000.1 vs. TAIR 10
Match: AT1G01750.1 (actin depolymerizing factor 11 )

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-42
Identity = 79/151 (52.32%), Postives = 113/151 (74.83%), Query Frame = 0 

Query: 10  NTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESYEDFTAALPD 69
           N+ S M V++  K  F EL+ K+ YR+++FK+DEK ++V++DK+G+P E+YEDFT ++P+
Sbjct: 3   NSASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPE 62

Query: 70  NDCRYAVYDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRIRAKMLYATS 129
           ++CRYAVYD+DF T +NCQKSKIFFIAW                SP +SR+R+KMLYA+S
Sbjct: 63  DECRYAVYDYDFTTPENCQKSKIFFIAW----------------SPDTSRVRSKMLYASS 122

Query: 130 KDSFRHDLNGIHYEIQATDPAEMDLDVIRDR 161
           KD F+ +L+GI  E+QATDP+EM LD+I+ R
Sbjct: 123 KDRFKRELDGIQVELQATDPSEMSLDIIKGR 137

[Close]
BLAST of CmoCh19G001000.1 vs. TAIR 10
Match: AT3G46010.2 (actin depolymerizing factor 1 )

HSP 1 Score: 164.9 bits (416), Expect = 5.6e-41
Identity = 77/155 (49.68%), Postives = 111/155 (71.61%), Query Frame = 0 

Query: 7   RRQNTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESYEDFTAA 66
           R  N  S M V++  K  F EL+ K+ +R++++K++EK+++VVV+K+G P ++YE+F A 
Sbjct: 11  RSANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAAC 70

Query: 67  LPDNDCRYAVYDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRIRAKMLY 126
           LP ++CRYA+YDFDFVT++NCQKSKIFFIAW                 P  +++R+KM+Y
Sbjct: 71  LPADECRYAIYDFDFVTAENCQKSKIFFIAW----------------CPDIAKVRSKMIY 130

Query: 127 ATSKDSFRHDLNGIHYEIQATDPAEMDLDVIRDRA 162
           A+SKD F+ +L+GI  E+QATDP EMDLDV R RA
Sbjct: 131 ASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRA 149

[Close]
BLAST of CmoCh19G001000.1 vs. TAIR 10
Match: AT3G46010.1 (actin depolymerizing factor 1 )

HSP 1 Score: 164.1 bits (414), Expect = 9.5e-41
Identity = 76/152 (50.00%), Postives = 110/152 (72.37%), Query Frame = 0 

Query: 10  NTLSAMGVNEHTKKIFSELQRKKMYRYVIFKVDEKKREVVVDKIGSPAESYEDFTAALPD 69
           N  S M V++  K  F EL+ K+ +R++++K++EK+++VVV+K+G P ++YE+F A LP 
Sbjct: 3   NAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPA 62

Query: 70  NDCRYAVYDFDFVTSDNCQKSKIFFIAWLAFTYHQLTLIFLIAMSPASSRIRAKMLYATS 129
           ++CRYA+YDFDFVT++NCQKSKIFFIAW                 P  +++R+KM+YA+S
Sbjct: 63  DECRYAIYDFDFVTAENCQKSKIFFIAW----------------CPDIAKVRSKMIYASS 122

Query: 130 KDSFRHDLNGIHYEIQATDPAEMDLDVIRDRA 162
           KD F+ +L+GI  E+QATDP EMDLDV R RA
Sbjct: 123 KDRFKRELDGIQVELQATDPTEMDLDVFRSRA 138

The following BLAST results are available for this feature:
BLAST of CmoCh19G001000.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8SAG31.9e-5467.08Actin-depolymerizing factor OS=Vitis vinifera OX=29760 PE=2 SV=1[more]
Q9ZSK21.8e-5263.35Actin-depolymerizing factor 6 OS=Arabidopsis thaliana OX=3702 GN=ADF6 PE=1 SV=1[more]
Q2QLT85.6e-4658.44Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF11... [more]
Q9AY762.4e-4458.55Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF2 P... [more]
Q337A57.6e-4357.24Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF10... [more]
BLAST of CmoCh19G001000.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HST99.5e-7390.12actin-depolymerizing factor-like OS=Cucurbita maxima OX=3661 GN=LOC111467118 PE=... [more]
A0A6J1HGI89.5e-7390.12actin-depolymerizing factor-like OS=Cucurbita moschata OX=3662 GN=LOC111464091 P... [more]
A0A1S3BHG15.8e-7086.42actin-depolymerizing factor OS=Cucumis melo OX=3656 GN=LOC103489879 PE=3 SV=1[more]
A0A6J1K5885.8e-7086.42actin-depolymerizing factor-like OS=Cucurbita maxima OX=3661 GN=LOC111491296 PE=... [more]
A0A6J1EY995.8e-7086.42actin-depolymerizing factor-like OS=Cucurbita moschata OX=3662 GN=LOC111437311 P... [more]
BLAST of CmoCh19G001000.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G31200.11.3e-5363.35actin depolymerizing factor 6 [more]
AT4G00680.12.7e-4352.98actin depolymerizing factor 8 [more]
AT1G01750.11.3e-4252.32actin depolymerizing factor 11 [more]
AT3G46010.25.6e-4149.68actin depolymerizing factor 1 [more]
AT3G46010.19.5e-4150.00actin depolymerizing factor 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002108Actin-depolymerising factor homology domainSMARTSM00102adf_2coord: 19..162
e-value: 1.2E-42
score: 157.7
IPR002108Actin-depolymerising factor homology domainPFAMPF00241Cofilin_ADFcoord: 22..98
e-value: 2.7E-19
score: 69.2
coord: 107..159
e-value: 5.3E-12
score: 45.6
IPR002108Actin-depolymerising factor homology domainPROSITEPS51263ADF_Hcoord: 13..162
score: 32.365395
IPR029006ADF-H/Gelsolin-like domain superfamilyGENE3D3.40.20.10Severincoord: 5..162
e-value: 5.9E-47
score: 161.4
NoneNo IPR availablePANTHERPTHR11913:SF96COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEINcoord: 1..99
NoneNo IPR availablePANTHERPTHR11913:SF96COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEINcoord: 104..162
NoneNo IPR availableSUPERFAMILY55753Actin depolymerizing proteinscoord: 9..160
IPR017904ADF/CofilinPANTHERPTHR11913COFILIN-RELATEDcoord: 104..162
IPR017904ADF/CofilinPANTHERPTHR11913COFILIN-RELATEDcoord: 1..99
IPR017904ADF/CofilinCDDcd11286ADF_cofilin_likecoord: 13..161
e-value: 2.64678E-57
score: 173.512

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh19G001000CmoCh19G001000gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G001000.1:exon:6788CmoCh19G001000.1:exon:6788exon
CmoCh19G001000.1:exon:6787CmoCh19G001000.1:exon:6787exon
CmoCh19G001000.1:exon:6786CmoCh19G001000.1:exon:6786exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G001000.1:three_prime_utrCmoCh19G001000.1:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G001000.1:cdsCmoCh19G001000.1:cds_3CDS
CmoCh19G001000.1:cdsCmoCh19G001000.1:cds_2CDS
CmoCh19G001000.1:cdsCmoCh19G001000.1:cdsCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G001000.1:five_prime_utrCmoCh19G001000.1:five_prime_utrfive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh19G001000.1CmoCh19G001000.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030042 actin filament depolymerization
cellular_component GO:0015629 actin cytoskeleton
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003779 actin binding
molecular_function GO:0051015 actin filament binding