CmoCh18G011190.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G011190.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein BIG GRAIN 1-like E
Location	Cmo_Chr18: 11563406 .. 11564074 (+)
Sequence length	669
RNA-Seq Expression	CmoCh18G011190.1
Synteny	CmoCh18G011190.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGCCGCCACCCACCTCTCCGGCAACCCAGATAAGATCTTCCACAAACCACCACATCGGCGGAACGCTTCCACCGAGCTCGACGTCTTCGAAGCCGCCCGCTACTTCTCCGGTAGCAACGAACTCATTTACACCAACACTTCATCATTCACTCACAATATCATCAGAGAGGATCACAGCAGCCGGAGAGGCGGAAGAATGAGCCTCGACTTGCCGTTAAGAACCAATGCAGCTCCACCGCCGCCGTACACGGCGGAGAAGCCACCAATCAAAGAGAAAAAACACCGGCAACAACCCAGCTCCCCGGCTGGTCGGCTCGCCAATTTCCTCAATTCCCTCTTCAACCAATCAGCTTCTCAAAAGAAAAAGAAACCCAAAAATGGCATGAAAAACGATGAATTTCATCACGAAATTGGAGCAAGAAAGAGAAGAAGCAGCTTAAGTTCGCTCATCGATTCAAAATCATCTTCAAACATCTCAGCTCCCAACAAAAATTACAAGCAAATCAGAAACCTTTTGGATCAGACACGACCAGCTTCCAAGAATCTCGGAAATGTTAAGCAAAATTCTGATCACCCGACCAGAAAAATCAAAGATGTCGACCAAGATGCTCGAAGTGATTCAAGTTCCGATCTTTTTGAGCTACGAATCTACGACTTCGATTGA

mRNA sequence

ATGTCCGCCGCCACCCACCTCTCCGGCAACCCAGATAAGATCTTCCACAAACCACCACATCGGCGGAACGCTTCCACCGAGCTCGACGTCTTCGAAGCCGCCCGCTACTTCTCCGGTAGCAACGAACTCATTTACACCAACACTTCATCATTCACTCACAATATCATCAGAGAGGATCACAGCAGCCGGAGAGGCGGAAGAATGAGCCTCGACTTGCCGTTAAGAACCAATGCAGCTCCACCGCCGCCGTACACGGCGGAGAAGCCACCAATCAAAGAGAAAAAACACCGGCAACAACCCAGCTCCCCGGCTGGTCGGCTCGCCAATTTCCTCAATTCCCTCTTCAACCAATCAGCTTCTCAAAAGAAAAAGAAACCCAAAAATGGCATGAAAAACGATGAATTTCATCACGAAATTGGAGCAAGAAAGAGAAGAAGCAGCTTAAGTTCGCTCATCGATTCAAAATCATCTTCAAACATCTCAGCTCCCAACAAAAATTACAAGCAAATCAGAAACCTTTTGGATCAGACACGACCAGCTTCCAAGAATCTCGGAAATGTTAAGCAAAATTCTGATCACCCGACCAGAAAAATCAAAGATGTCGACCAAGATGCTCGAAGTGATTCAAGTTCCGATCTTTTTGAGCTACGAATCTACGACTTCGATTGA

Coding sequence (CDS)

ATGTCCGCCGCCACCCACCTCTCCGGCAACCCAGATAAGATCTTCCACAAACCACCACATCGGCGGAACGCTTCCACCGAGCTCGACGTCTTCGAAGCCGCCCGCTACTTCTCCGGTAGCAACGAACTCATTTACACCAACACTTCATCATTCACTCACAATATCATCAGAGAGGATCACAGCAGCCGGAGAGGCGGAAGAATGAGCCTCGACTTGCCGTTAAGAACCAATGCAGCTCCACCGCCGCCGTACACGGCGGAGAAGCCACCAATCAAAGAGAAAAAACACCGGCAACAACCCAGCTCCCCGGCTGGTCGGCTCGCCAATTTCCTCAATTCCCTCTTCAACCAATCAGCTTCTCAAAAGAAAAAGAAACCCAAAAATGGCATGAAAAACGATGAATTTCATCACGAAATTGGAGCAAGAAAGAGAAGAAGCAGCTTAAGTTCGCTCATCGATTCAAAATCATCTTCAAACATCTCAGCTCCCAACAAAAATTACAAGCAAATCAGAAACCTTTTGGATCAGACACGACCAGCTTCCAAGAATCTCGGAAATGTTAAGCAAAATTCTGATCACCCGACCAGAAAAATCAAAGATGTCGACCAAGATGCTCGAAGTGATTCAAGTTCCGATCTTTTTGAGCTACGAATCTACGACTTCGATTGA

Protein sequence

MSAATHLSGNPDKIFHKPPHRRNASTELDVFEAARYFSGSNELIYTNTSSFTHNIIREDHSSRRGGRMSLDLPLRTNAAPPPPYTAEKPPIKEKKHRQQPSSPAGRLANFLNSLFNQSASQKKKKPKNGMKNDEFHHEIGARKRRSSLSSLIDSKSSSNISAPNKNYKQIRNLLDQTRPASKNLGNVKQNSDHPTRKIKDVDQDARSDSSSDLFELRIYDFD

Homology

[Close]

BLAST of CmoCh18G011190.1 vs. ExPASy Swiss-Prot
Match: Q93Z37 (Protein BIG GRAIN 1-like E OS=Arabidopsis thaliana OX=3702 GN=At1g69160 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-13
Identity = 92/281 (32.74%), Postives = 123/281 (43.77%), Query Frame = 0


Query: 20  HRRNASTELDVFEAARYFSGSNELI---YTNTSSFTHNIIREDHSSR-----RGGRMSLD 79
           H+RN S ELDVFEAA YF G NE     + +T  + +N  RE++  R      G R+SLD
Sbjct: 22  HKRN-SEELDVFEAAVYF-GYNEASSGDHGHTQKYGYNAAREENPRRWGILGGGRRISLD 81

Query: 80  LPLRTNAA---------PPPPYTAEKPPIKEKKHRQQPSSPAGRLANFLNSLFNQSASQK 139
           LP+R +                T  K  +   +H+ QPSSP G++A+FLNSLF+Q+ S+K
Sbjct: 82  LPIRCSEQVYHLQQDHHEKHEVTTIKERLGNVRHK-QPSSPGGKIASFLNSLFHQAGSKK 141

Query: 140 ---KKKPKNGMKNDEFHHEIGA-----RKRRSSLS----------------------SLI 199
              K K K    + E   EI       R+RRSS+S                      SLI
Sbjct: 142 NKSKSKSKTKPTDPEVEEEIPGGGWMRRRRRSSISHFFSSSRSTSTTTTTTASSSSKSLI 201

Query: 200 DSKSSS------NISAPNKNYKQIRNLLDQTRPASKNLGNVKQNSDHPTRKIK------- 221
            S SS        ++ P KNYKQ  N    T+   +      +       K+K       
Sbjct: 202 SSSSSGFRTPPPYLNTPTKNYKQFLNYTSATKQVGEEETKTNKEYSWLDEKLKVMESLSE 261

[Close]

BLAST of CmoCh18G011190.1 vs. ExPASy TrEMBL
Match: A0A6J1G172 (protein BIG GRAIN 1-like E OS=Cucurbita moschata OX=3662 GN=LOC111449738 PE=3 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.0e-117
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MSAATHLSGNPDKIFHKPPHRRNASTELDVFEAARYFSGSNELIYTNTSSFTHNIIREDH 60
           MSAATHLSGNPDKIFHKPPHRRNASTELDVFEAARYFSGSNELIYTNTSSFTHNIIREDH
Sbjct: 1   MSAATHLSGNPDKIFHKPPHRRNASTELDVFEAARYFSGSNELIYTNTSSFTHNIIREDH 60

Query: 61  SSRRGGRMSLDLPLRTNAAPPPPYTAEKPPIKEKKHRQQPSSPAGRLANFLNSLFNQSAS 120
           SSRRGGRMSLDLPLRTNAAPPPPYTAEKPPIKEKKHRQQPSSPAGRLANFLNSLFNQSAS
Sbjct: 61  SSRRGGRMSLDLPLRTNAAPPPPYTAEKPPIKEKKHRQQPSSPAGRLANFLNSLFNQSAS 120

Query: 121 QKKKKPKNGMKNDEFHHEIGARKRRSSLSSLIDSKSSSNISAPNKNYKQIRNLLDQTRPA 180
           QKKKKPKNGMKNDEFHHEIGARKRRSSLSSLIDSKSSSNISAPNKNYKQIRNLLDQTRPA
Sbjct: 121 QKKKKPKNGMKNDEFHHEIGARKRRSSLSSLIDSKSSSNISAPNKNYKQIRNLLDQTRPA 180

Query: 181 SKNLGNVKQNSDHPTRKIKDVDQDARSDSSSDLFELRIYDFD 223
           SKNLGNVKQNSDHPTRKIKDVDQDARSDSSSDLFELRIYDFD
Sbjct: 181 SKNLGNVKQNSDHPTRKIKDVDQDARSDSSSDLFELRIYDFD 222

[Close]

BLAST of CmoCh18G011190.1 vs. ExPASy TrEMBL
Match: A0A6J1I085 (protein BIG GRAIN 1-like E OS=Cucurbita maxima OX=3661 GN=LOC111467800 PE=3 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 2.9e-112
Identity = 213/222 (95.95%), Postives = 215/222 (96.85%), Query Frame = 0


Query: 1   MSAATHLSGNPDKIFHKPPHRRNASTELDVFEAARYFSGSNELIYTNTSSFTHNIIREDH 60
           MSAATHL GNPDKIFHKPPHRRN STELDVFEAARYFSGSNEL YTNTSSFTH II EDH
Sbjct: 1   MSAATHLPGNPDKIFHKPPHRRNDSTELDVFEAARYFSGSNELAYTNTSSFTHKIIIEDH 60

Query: 61  SSRRGGRMSLDLPLRTNAAPPPPYTAEKPPIKEKKHRQQPSSPAGRLANFLNSLFNQSAS 120
           S RRGGRMSLDLPLRTNAAPPPPYTAEKPPIKEKKHRQQPSSPAGRLANFLNSLFNQSAS
Sbjct: 61  SRRRGGRMSLDLPLRTNAAPPPPYTAEKPPIKEKKHRQQPSSPAGRLANFLNSLFNQSAS 120

Query: 121 QKKKKPKNGMKNDEFHHEIGARKRRSSLSSLIDSKSSSNISAPNKNYKQIRNLLDQTRPA 180
           QKKKKPKNG KNDEFHHEIGARKRRSSLSSLIDSKSSSNISAPNKNYK+IRNLLDQTRPA
Sbjct: 121 QKKKKPKNGTKNDEFHHEIGARKRRSSLSSLIDSKSSSNISAPNKNYKEIRNLLDQTRPA 180

Query: 181 SKNLGNVKQNSDHPTRKIKDVDQDARSDSSSDLFELRIYDFD 223
           SKNLGNVKQNSDHPTRKIKDVD+DARSDSSSDLFELRIYDFD
Sbjct: 181 SKNLGNVKQNSDHPTRKIKDVDEDARSDSSSDLFELRIYDFD 222

[Close]

BLAST of CmoCh18G011190.1 vs. ExPASy TrEMBL
Match: A0A6J1D6V3 (protein BIG GRAIN 1-like E OS=Momordica charantia OX=3673 GN=LOC111017581 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 3.6e-62
Identity = 156/255 (61.18%), Postives = 172/255 (67.45%), Query Frame = 0


Query: 1   MSAATHLSGNPDKIFHKPPHRRNASTELDVFEAARYFSGSNELIYTNTSSFTHNIIREDH 60
           MS  +HLS NPDKIF K  HRRN S ELDVFEAARYFSG NE+ YT    +   I REDH
Sbjct: 1   MSITSHLSDNPDKIFKKSFHRRNNSGELDVFEAARYFSGCNEVSYTGGGGY-QKIFREDH 60

Query: 61  SSRRG-GRMSLDLPLRTNAA--PPPPYTAEKPPIKEKKHRQQPSSPAGRLANFLNSLFNQ 120
             RRG GRMSLDLP+RTN    PPPPYTAEK  IKEKKHRQQPSSP GRLANFLNSLFNQ
Sbjct: 61  GGRRGAGRMSLDLPIRTNVVPLPPPPYTAEKQTIKEKKHRQQPSSPGGRLANFLNSLFNQ 120

Query: 121 SASQKKKKPKNGMKNDEFHHEIGARKRRSSLSSLIDSKSSSNIS---------------A 180
           SAS+KKKKPKN +K+++       RKRRSSLS+LIDSKSSSN S                
Sbjct: 121 SASKKKKKPKNPIKSEDQEIGSAGRKRRSSLSNLIDSKSSSNFSVSGFRTPPTPNCTLQT 180

Query: 181 PNKNYKQIRNLLDQTRPASKNLG-----------NVKQNSD----HPTRKIKDVDQDARS 223
           PNKNYK+IR LL     ++ NLG           N KQNSD    +  RKI  +D+ A S
Sbjct: 181 PNKNYKEIRTLLSS---SNNNLGNGSFNQVAYNNNYKQNSDRHQENEIRKINGLDEGADS 240

[Close]

BLAST of CmoCh18G011190.1 vs. ExPASy TrEMBL
Match: A0A0A0KSX8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606790 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 4.3e-60
Identity = 145/245 (59.18%), Postives = 169/245 (68.98%), Query Frame = 0


Query: 1   MSAATHLSGNPDKIFHKPPHRRNASTELDVFEAARYFSGSNELIYTNTSSFTHNIIREDH 60
           MS  +HLSG+PDKIF K  HRR  S ELDVFEAARYF+GSNE  YT  +++  ++    H
Sbjct: 1   MSVTSHLSGHPDKIFRKSLHRRKDSGELDVFEAARYFAGSNEPSYTTAATYETSLF---H 60

Query: 61  SSRRGGRMSLDLPLRTNA--APPPPYTAEKPPIKE-KKHRQQPSSPAGRLANFLNSLFNQ 120
             RRGGRMSLDLPLRTN    P PPYTAEK  +K+ KKHRQQPSSP GRLANFLNSLFNQ
Sbjct: 61  GGRRGGRMSLDLPLRTNVIPLPTPPYTAEKQSVKDPKKHRQQPSSPGGRLANFLNSLFNQ 120

Query: 121 SASQKKKKPKNGMKNDEFHHEIGARKRRSSLSSLIDSKSSSN------------------ 180
           SAS+KKKKPKN +K ++ HHE+GARKRRSSLS+LID+KSSS+                  
Sbjct: 121 SASKKKKKPKNSIKTEDLHHEMGARKRRSSLSTLIDTKSSSHSSSKISGFRTPPAPNCCT 180

Query: 181 ISAPNKNYKQIRNLLDQTRPA----SKNLGNVKQNSDHPTRKIKDVDQDARSDSSSDLFE 221
           +  PNKNY +IR+ LDQ R      SK  G   Q S+   RK+ D D+   SDSSSDLFE
Sbjct: 181 VQTPNKNYMEIRSFLDQKREGINYYSKKNGINNQKSE--MRKMNDQDEGDESDSSSDLFE 240

[Close]

BLAST of CmoCh18G011190.1 vs. ExPASy TrEMBL
Match: A0A5D3CB02 (Protein BIG GRAIN 1-like E OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00190 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 9.1e-58
Identity = 143/245 (58.37%), Postives = 163/245 (66.53%), Query Frame = 0


Query: 1   MSAATHLSGNPDKIFHKPPHRRNASTELDVFEAARYFSGSNELIYTNTSSFTHNIIREDH 60
           MS  +HLSG+P+KIF K  HRR  S ELDVFEAA YFSGSNE    NT++     +   H
Sbjct: 1   MSVTSHLSGHPNKIFRKSLHRRKDSDELDVFEAASYFSGSNEPCNYNTATTYETSL--FH 60

Query: 61  SSRRGGRMSLDLPLRTNA--APPPPYTAEKPPIKE-KKHRQQPSSPAGRLANFLNSLFNQ 120
             RRGGRMSLDLPLRTN    PPPPYTAEK  IK+ KKHRQQPSSP GRLANFLNSLFNQ
Sbjct: 61  GGRRGGRMSLDLPLRTNVIPLPPPPYTAEKQSIKDPKKHRQQPSSPGGRLANFLNSLFNQ 120

Query: 121 SASQKKKKPKNGMKNDEFHHEIGARKRRSSLSSLIDSKSSSN------------------ 180
           S S+KKKKPKN +K ++ HHEIGARKRRSSLS+LID+KSSSN                  
Sbjct: 121 SGSKKKKKPKNSIKTEDLHHEIGARKRRSSLSTLIDTKSSSNNSSKVSGFRTPPAPNCCS 180

Query: 181 ISAPNKNYKQIRNLLDQTRP----ASKNLGNVKQNSDHPTRKIKDVDQDARSDSSSDLFE 221
           +  P+K Y +IR+ LDQ R     + KN      N     RK+ D D+   SDSSSDLFE
Sbjct: 181 VQTPSKKYMEIRSFLDQKREGNYYSKKNNRGNGINEKSEMRKMNDEDEGDESDSSSDLFE 240

[Close]

BLAST of CmoCh18G011190.1 vs. TAIR 10
Match: AT1G69160.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13980.1); Has 173 Blast hits to 172 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 33; Plants - 84; Viruses - 2; Other Eukaryotes - 29 (source: NCBI BLink). )

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-14
Identity = 92/281 (32.74%), Postives = 123/281 (43.77%), Query Frame = 0


Query: 20  HRRNASTELDVFEAARYFSGSNELI---YTNTSSFTHNIIREDHSSR-----RGGRMSLD 79
           H+RN S ELDVFEAA YF G NE     + +T  + +N  RE++  R      G R+SLD
Sbjct: 22  HKRN-SEELDVFEAAVYF-GYNEASSGDHGHTQKYGYNAAREENPRRWGILGGGRRISLD 81

Query: 80  LPLRTNAA---------PPPPYTAEKPPIKEKKHRQQPSSPAGRLANFLNSLFNQSASQK 139
           LP+R +                T  K  +   +H+ QPSSP G++A+FLNSLF+Q+ S+K
Sbjct: 82  LPIRCSEQVYHLQQDHHEKHEVTTIKERLGNVRHK-QPSSPGGKIASFLNSLFHQAGSKK 141

Query: 140 ---KKKPKNGMKNDEFHHEIGA-----RKRRSSLS----------------------SLI 199
              K K K    + E   EI       R+RRSS+S                      SLI
Sbjct: 142 NKSKSKSKTKPTDPEVEEEIPGGGWMRRRRRSSISHFFSSSRSTSTTTTTTASSSSKSLI 201

Query: 200 DSKSSS------NISAPNKNYKQIRNLLDQTRPASKNLGNVKQNSDHPTRKIK------- 221
            S SS        ++ P KNYKQ  N    T+   +      +       K+K       
Sbjct: 202 SSSSSGFRTPPPYLNTPTKNYKQFLNYTSATKQVGEEETKTNKEYSWLDEKLKVMESLSE 261

The following BLAST results are available for this feature:

BLAST of CmoCh18G011190.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93Z37	2.3e-13	32.74	Protein BIG GRAIN 1-like E OS=Arabidopsis thaliana OX=3702 GN=At1g69160 PE=2 SV=...	[more]

BLAST of CmoCh18G011190.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G172	1.0e-117	100.00	protein BIG GRAIN 1-like E OS=Cucurbita moschata OX=3662 GN=LOC111449738 PE=3 SV...	[more]
A0A6J1I085	2.9e-112	95.95	protein BIG GRAIN 1-like E OS=Cucurbita maxima OX=3661 GN=LOC111467800 PE=3 SV=1	[more]
A0A6J1D6V3	3.6e-62	61.18	protein BIG GRAIN 1-like E OS=Momordica charantia OX=3673 GN=LOC111017581 PE=3 S...	[more]
A0A0A0KSX8	4.3e-60	59.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606790 PE=3 SV=1	[more]
A0A5D3CB02	9.1e-58	58.37	Protein BIG GRAIN 1-like E OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of CmoCh18G011190.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69160.1	1.6e-14	32.74	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..210
None	No IPR available	PANTHER	PTHR33541:SF11	PROTEIN BIG GRAIN 1-LIKE E	coord: 181..222 coord: 9..159
IPR039621	Protein BIG GRAIN 1-like	PANTHER	PTHR33541	PROTEIN BIG GRAIN 1-LIKE A-RELATED	coord: 181..222
IPR039621	Protein BIG GRAIN 1-like	PANTHER	PTHR33541	PROTEIN BIG GRAIN 1-LIKE A-RELATED	coord: 9..159

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh18G011190	CmoCh18G011190	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G011190.1:exon:2944	CmoCh18G011190.1:exon:2944	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh18G011190.1:cds	CmoCh18G011190.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh18G011190.1	CmoCh18G011190.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
cellular_component	GO:0005886	plasma membrane