CmoCh17G002870.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G002870.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr17: 1734169 .. 1734573 (-)
Sequence length	405
RNA-Seq Expression	CmoCh17G002870.1
Synteny	CmoCh17G002870.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCAAATGAACAATGCTTCTTCTTTATTCCTCTGGGAAGACACAGCAGATTCTGAGGTGGATAGATCATTGTCTCATCCTCATCAACTCGAATCTGCTGTGGACGATCCGGAGGACGCTCGATCCTGCAGCTGCGATGATTATGCTACTGATCGGAGCGCCGTTGATCTCCAAGATGATGGGGATGGTGATGAAGATCGAGCTGTTGGTTCGACCGGTGACGACGCTCGATCAAGCCATCTCGATGAAACACGACCAAGCGGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGAATAATAATGTGGGTGCGATCCGAGATATGAACGAAATGGAAGATAAGCTCTTTTGGGATACGTGCATGGAGGGAGGGTATCCGTGA

mRNA sequence

ATGGACCAAATGAACAATGCTTCTTCTTTATTCCTCTGGGAAGACACAGCAGATTCTGAGGTGGATAGATCATTGTCTCATCCTCATCAACTCGAATCTGCTGTGGACGATCCGGAGGACGCTCGATCCTGCAGCTGCGATGATTATGCTACTGATCGGAGCGCCGTTGATCTCCAAGATGATGGGGATGGTGATGAAGATCGAGCTGTTGGTTCGACCGGTGACGACGCTCGATCAAGCCATCTCGATGAAACACGACCAAGCGGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGAATAATAATGTGGGTGCGATCCGAGATATGAACGAAATGGAAGATAAGCTCTTTTGGGATACGTGCATGGAGGGAGGGTATCCGTGA

Coding sequence (CDS)

ATGGACCAAATGAACAATGCTTCTTCTTTATTCCTCTGGGAAGACACAGCAGATTCTGAGGTGGATAGATCATTGTCTCATCCTCATCAACTCGAATCTGCTGTGGACGATCCGGAGGACGCTCGATCCTGCAGCTGCGATGATTATGCTACTGATCGGAGCGCCGTTGATCTCCAAGATGATGGGGATGGTGATGAAGATCGAGCTGTTGGTTCGACCGGTGACGACGCTCGATCAAGCCATCTCGATGAAACACGACCAAGCGGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGAATAATAATGTGGGTGCGATCCGAGATATGAACGAAATGGAAGATAAGCTCTTTTGGGATACGTGCATGGAGGGAGGGTATCCGTGA

Protein sequence

MDQMNNASSLFLWEDTADSEVDRSLSHPHQLESAVDDPEDARSCSCDDYATDRSAVDLQDDGDGDEDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAIRDMNEMEDKLFWDTCMEGGYP

Homology

[Close]

BLAST of CmoCh17G002870.1 vs. ExPASy TrEMBL
Match: A0A5A7SSL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001140 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.2e-30
Identity = 87/143 (60.84%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 1   MDQMNNASSLFLWEDTADSEVDRSLSHPHQLESAV--DDPEDARSCSC---DDYATDRSA 60
           MDQ+ +ASS FLWED+ADSEVD+ LSHPH+LESAV  DD EDA SCSC   D    D  A
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRA 60

Query: 61  VDLQDDGDG---DEDRAVGSTGDDARSSHLDETRPSGATLEYS-SEEDEEEEEESNNNVG 120
           +D QDDGD    D D+ +   GD  R       R SGA L+Y   EE+EEEEEES+++VG
Sbjct: 61  LDFQDDGDNGDRDLDQDICLIGDGGR-------RRSGAALKYGYEEEEEEEEEESSDDVG 120

Query: 121 AIRDMNEMEDKLFWDTCMEGGYP 135
            IR+MNEMEDKLFWDTCM GGYP
Sbjct: 121 VIRNMNEMEDKLFWDTCMAGGYP 136

[Close]

BLAST of CmoCh17G002870.1 vs. ExPASy TrEMBL
Match: A0A0A0KBF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 89/141 (63.12%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 1   MDQMNNASSLFLWEDTADSEVDRSLSH-PHQLESAV---DDPEDARSCSCDDYATDRSAV 60
           MDQ+ +ASS FLWED+ADSEVD+ LSH PHQLESAV   DD EDA SCSC++   D S  
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNN--NDFSID 60

Query: 61  DLQD--DGD-GDEDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAI 120
           D QD  DGD GD D+ +G  GD  R       R SGA   Y  EE+EEEEE SNN+VGAI
Sbjct: 61  DFQDAYDGDNGDGDQDIGLIGDGGR-------RRSGA--GYEEEEEEEEEESSNNDVGAI 120

Query: 121 RDMNEMEDKLFWDTCMEGGYP 135
           R+MNEMEDK+FWDTCM GGYP
Sbjct: 121 RNMNEMEDKVFWDTCMAGGYP 130

[Close]

BLAST of CmoCh17G002870.1 vs. ExPASy TrEMBL
Match: A0A5N6RGD2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_015512 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.7e-07
Identity = 57/148 (38.51%), Postives = 70/148 (47.30%), Query Frame = 0


Query: 6   NASSLFLWEDTADSEVDRSLSHPHQLESAVDDPEDARSCSCDDYATDRSAVDLQDDGDGD 65
           + SS  L+ED ADSE D +    H++ +  DD +DA SCSCDD   D       +  D D
Sbjct: 2   DVSSCLLFEDIADSETD-AAGPDHKIHA--DDDQDAESCSCDDACDDHHTPGFDEALDCD 61

Query: 66  EDRAVGSTGDDARSSHLDETRP---------SGATLEYSSEEDEEEEEESNNNVGAIR-- 125
           E  +  S G DA   H    RP           A    SSEE E EEE    N+G I   
Sbjct: 62  EKDSGASNGGDAGDDHHQCGRPCASCCLSSDHAALGSLSSEEGEGEEE---TNMGEINKD 121

Query: 126 --------DMNEMEDKLFWDTCMEGGYP 135
                   + +EMED LFW+TCM  GYP
Sbjct: 122 DPSKKKEINKDEMEDGLFWETCMAVGYP 143

[Close]

BLAST of CmoCh17G002870.1 vs. ExPASy TrEMBL
Match: A0A2N9EJU4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2920 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 49/133 (36.84%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 6   NASSLFLWEDTADSEVDRSLSHPHQLESAVDDPEDARSCSCDDYATDRSAVDLQDDGDGD 65
           + SS  L+EDTADSE D  + H   + + + D +DA SCSCD    D+         D D
Sbjct: 11  DVSSSLLFEDTADSETDAEI-HADDVATDIFDDQDAESCSCDTCDDDKLGFTDHQVLDCD 70

Query: 66  EDRAVGSTGDDARSSHLDETRPSGATLEYSSEED----EEEEEESNNNVGAIRDMNEMED 125
           +  +  S+G +       E   SG    + S+E+      +E E    V  I D++EMED
Sbjct: 71  DQDSGNSSGINHGDDDHHEPSTSGCNQLWLSDENSGCLSRKEGEEETKVDKI-DVDEMED 130

Query: 126 KLFWDTCMEGGYP 135
           +LFW+TCME GYP
Sbjct: 131 RLFWETCMEVGYP 141

[Close]

BLAST of CmoCh17G002870.1 vs. ExPASy TrEMBL
Match: A0A2H5N748 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_020050 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-05
Identity = 54/142 (38.03%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 6   NASSLFLWEDTADSEVDRSLSHPHQLESAV---DDPEDARSCSCDDYATDRSAVDLQDDG 65
           + SS  L E++ADSEVD SL+    L  AV    D +DA SCSCD        +++Q +G
Sbjct: 8   DVSSFVLVEESADSEVD-SLTCEMCLRDAVMATGDEDDAESCSCD-------TIEMQAEG 67

Query: 66  -DGDEDRAVGSTGDDARSSHLDETRP----SGATLEYSSEEDEEEEEES-----NNNVGA 125
            D D D     + DD   S  D+ R         + ++   D+EEE  S     NNN+  
Sbjct: 68  LDYDHDHKNEESNDDGDGSSTDQHRQINWGGSCKIWWADAADDEEEYSSWDIGINNNISR 127

Query: 126 IRDMNEMEDKLFWDTCMEGGYP 135
            +  +EMED+LFW+TCM  GYP
Sbjct: 128 -KVKDEMEDRLFWETCMAFGYP 140

The following BLAST results are available for this feature:

BLAST of CmoCh17G002870.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh17G002870.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSL9	8.2e-30	60.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KBF3	1.2e-28	63.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1	[more]
A0A5N6RGD2	5.7e-07	38.51	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_015512 PE=4 SV=1	[more]
A0A2N9EJU4	2.2e-06	36.84	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2920 PE=4 SV=1	[more]
A0A2H5N748	3.2e-05	38.03	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_020050 PE=4 SV=1	[more]

BLAST of CmoCh17G002870.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..118
None	No IPR available	PANTHER	PTHR35726	GLUTAMIC ACID-RICH PROTEIN-LIKE	coord: 3..134
None	No IPR available	PANTHER	PTHR35726:SF5	SUBFAMILY NOT NAMED	coord: 3..134

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh17G002870	CmoCh17G002870	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G002870.1:exon:5586	CmoCh17G002870.1:exon:5586	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G002870.1:cds	CmoCh17G002870.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh17G002870.1	CmoCh17G002870.1-protein	polypeptide