CmoCh17G002870 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G002870
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr17: 1734169 .. 1734573 (-)
RNA-Seq ExpressionCmoCh17G002870
SyntenyCmoCh17G002870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCAAATGAACAATGCTTCTTCTTTATTCCTCTGGGAAGACACAGCAGATTCTGAGGTGGATAGATCATTGTCTCATCCTCATCAACTCGAATCTGCTGTGGACGATCCGGAGGACGCTCGATCCTGCAGCTGCGATGATTATGCTACTGATCGGAGCGCCGTTGATCTCCAAGATGATGGGGATGGTGATGAAGATCGAGCTGTTGGTTCGACCGGTGACGACGCTCGATCAAGCCATCTCGATGAAACACGACCAAGCGGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGAATAATAATGTGGGTGCGATCCGAGATATGAACGAAATGGAAGATAAGCTCTTTTGGGATACGTGCATGGAGGGAGGGTATCCGTGA

mRNA sequence

ATGGACCAAATGAACAATGCTTCTTCTTTATTCCTCTGGGAAGACACAGCAGATTCTGAGGTGGATAGATCATTGTCTCATCCTCATCAACTCGAATCTGCTGTGGACGATCCGGAGGACGCTCGATCCTGCAGCTGCGATGATTATGCTACTGATCGGAGCGCCGTTGATCTCCAAGATGATGGGGATGGTGATGAAGATCGAGCTGTTGGTTCGACCGGTGACGACGCTCGATCAAGCCATCTCGATGAAACACGACCAAGCGGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGAATAATAATGTGGGTGCGATCCGAGATATGAACGAAATGGAAGATAAGCTCTTTTGGGATACGTGCATGGAGGGAGGGTATCCGTGA

Coding sequence (CDS)

ATGGACCAAATGAACAATGCTTCTTCTTTATTCCTCTGGGAAGACACAGCAGATTCTGAGGTGGATAGATCATTGTCTCATCCTCATCAACTCGAATCTGCTGTGGACGATCCGGAGGACGCTCGATCCTGCAGCTGCGATGATTATGCTACTGATCGGAGCGCCGTTGATCTCCAAGATGATGGGGATGGTGATGAAGATCGAGCTGTTGGTTCGACCGGTGACGACGCTCGATCAAGCCATCTCGATGAAACACGACCAAGCGGGGCAACGTTGGAGTATAGTTCTGAGGAGGACGAGGAAGAAGAAGAAGAGTCGAATAATAATGTGGGTGCGATCCGAGATATGAACGAAATGGAAGATAAGCTCTTTTGGGATACGTGCATGGAGGGAGGGTATCCGTGA

Protein sequence

MDQMNNASSLFLWEDTADSEVDRSLSHPHQLESAVDDPEDARSCSCDDYATDRSAVDLQDDGDGDEDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAIRDMNEMEDKLFWDTCMEGGYP
Homology
BLAST of CmoCh17G002870 vs. ExPASy TrEMBL
Match: A0A5A7SSL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001140 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.2e-30
Identity = 87/143 (60.84%), Postives = 101/143 (70.63%), Query Frame = 0

Query: 1   MDQMNNASSLFLWEDTADSEVDRSLSHPHQLESAV--DDPEDARSCSC---DDYATDRSA 60
           MDQ+ +ASS FLWED+ADSEVD+ LSHPH+LESAV  DD EDA SCSC   D    D  A
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRA 60

Query: 61  VDLQDDGDG---DEDRAVGSTGDDARSSHLDETRPSGATLEYS-SEEDEEEEEESNNNVG 120
           +D QDDGD    D D+ +   GD  R       R SGA L+Y   EE+EEEEEES+++VG
Sbjct: 61  LDFQDDGDNGDRDLDQDICLIGDGGR-------RRSGAALKYGYEEEEEEEEEESSDDVG 120

Query: 121 AIRDMNEMEDKLFWDTCMEGGYP 135
            IR+MNEMEDKLFWDTCM GGYP
Sbjct: 121 VIRNMNEMEDKLFWDTCMAGGYP 136

BLAST of CmoCh17G002870 vs. ExPASy TrEMBL
Match: A0A0A0KBF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 89/141 (63.12%), Postives = 101/141 (71.63%), Query Frame = 0

Query: 1   MDQMNNASSLFLWEDTADSEVDRSLSH-PHQLESAV---DDPEDARSCSCDDYATDRSAV 60
           MDQ+ +ASS FLWED+ADSEVD+ LSH PHQLESAV   DD EDA SCSC++   D S  
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNN--NDFSID 60

Query: 61  DLQD--DGD-GDEDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAI 120
           D QD  DGD GD D+ +G  GD  R       R SGA   Y  EE+EEEEE SNN+VGAI
Sbjct: 61  DFQDAYDGDNGDGDQDIGLIGDGGR-------RRSGA--GYEEEEEEEEEESSNNDVGAI 120

Query: 121 RDMNEMEDKLFWDTCMEGGYP 135
           R+MNEMEDK+FWDTCM GGYP
Sbjct: 121 RNMNEMEDKVFWDTCMAGGYP 130

BLAST of CmoCh17G002870 vs. ExPASy TrEMBL
Match: A0A5N6RGD2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_015512 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.7e-07
Identity = 57/148 (38.51%), Postives = 70/148 (47.30%), Query Frame = 0

Query: 6   NASSLFLWEDTADSEVDRSLSHPHQLESAVDDPEDARSCSCDDYATDRSAVDLQDDGDGD 65
           + SS  L+ED ADSE D +    H++ +  DD +DA SCSCDD   D       +  D D
Sbjct: 2   DVSSCLLFEDIADSETD-AAGPDHKIHA--DDDQDAESCSCDDACDDHHTPGFDEALDCD 61

Query: 66  EDRAVGSTGDDARSSHLDETRP---------SGATLEYSSEEDEEEEEESNNNVGAIR-- 125
           E  +  S G DA   H    RP           A    SSEE E EEE    N+G I   
Sbjct: 62  EKDSGASNGGDAGDDHHQCGRPCASCCLSSDHAALGSLSSEEGEGEEE---TNMGEINKD 121

Query: 126 --------DMNEMEDKLFWDTCMEGGYP 135
                   + +EMED LFW+TCM  GYP
Sbjct: 122 DPSKKKEINKDEMEDGLFWETCMAVGYP 143

BLAST of CmoCh17G002870 vs. ExPASy TrEMBL
Match: A0A2N9EJU4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2920 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 49/133 (36.84%), Postives = 69/133 (51.88%), Query Frame = 0

Query: 6   NASSLFLWEDTADSEVDRSLSHPHQLESAVDDPEDARSCSCDDYATDRSAVDLQDDGDGD 65
           + SS  L+EDTADSE D  + H   + + + D +DA SCSCD    D+         D D
Sbjct: 11  DVSSSLLFEDTADSETDAEI-HADDVATDIFDDQDAESCSCDTCDDDKLGFTDHQVLDCD 70

Query: 66  EDRAVGSTGDDARSSHLDETRPSGATLEYSSEED----EEEEEESNNNVGAIRDMNEMED 125
           +  +  S+G +       E   SG    + S+E+      +E E    V  I D++EMED
Sbjct: 71  DQDSGNSSGINHGDDDHHEPSTSGCNQLWLSDENSGCLSRKEGEEETKVDKI-DVDEMED 130

Query: 126 KLFWDTCMEGGYP 135
           +LFW+TCME GYP
Sbjct: 131 RLFWETCMEVGYP 141

BLAST of CmoCh17G002870 vs. ExPASy TrEMBL
Match: A0A2H5N748 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_020050 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-05
Identity = 54/142 (38.03%), Postives = 74/142 (52.11%), Query Frame = 0

Query: 6   NASSLFLWEDTADSEVDRSLSHPHQLESAV---DDPEDARSCSCDDYATDRSAVDLQDDG 65
           + SS  L E++ADSEVD SL+    L  AV    D +DA SCSCD        +++Q +G
Sbjct: 8   DVSSFVLVEESADSEVD-SLTCEMCLRDAVMATGDEDDAESCSCD-------TIEMQAEG 67

Query: 66  -DGDEDRAVGSTGDDARSSHLDETRP----SGATLEYSSEEDEEEEEES-----NNNVGA 125
            D D D     + DD   S  D+ R         + ++   D+EEE  S     NNN+  
Sbjct: 68  LDYDHDHKNEESNDDGDGSSTDQHRQINWGGSCKIWWADAADDEEEYSSWDIGINNNISR 127

Query: 126 IRDMNEMEDKLFWDTCMEGGYP 135
            +  +EMED+LFW+TCM  GYP
Sbjct: 128 -KVKDEMEDRLFWETCMAFGYP 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SSL98.2e-3060.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KBF31.2e-2863.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1[more]
A0A5N6RGD25.7e-0738.51Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_015512 PE=4 SV=1[more]
A0A2N9EJU42.2e-0636.84Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2920 PE=4 SV=1[more]
A0A2H5N7483.2e-0538.03Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_020050 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..118
NoneNo IPR availablePANTHERPTHR35726GLUTAMIC ACID-RICH PROTEIN-LIKEcoord: 3..134
NoneNo IPR availablePANTHERPTHR35726:SF5SUBFAMILY NOT NAMEDcoord: 3..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G002870.1CmoCh17G002870.1mRNA