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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAATGGGCTTTCAGATATGGAGACGCTGTCCAACAGGAAATGGGCTTTAAGAGAAGGAGGCCCAGCCCAATAGGAAAGCATTGGAAATATCTGAAAACAAATAAATCAGCGAATTGTCAAAGGAAGAAAACGTGTAGAGCTTTGATTCGGCCTCACAGCTATATCTATGAGACCGATTCATTTATCTTGACCCAAAGGATTAGTTCCGTAAGATCCCAATTCCGCCACTATTTTCGACCTCATCCTCCCAAAATTATCCGATCCGCTTCCGCTGCCGCTGCAACGCCGCTGATCTTTTGCAGCATGTTACGGATCAGATGATTTCCAGTTCTTCCTTTTACTGACCGATTTCAGGTTCTCATGTTCTGAACCTTTGTGTTCTATTCGTACTTTCGATTCGCACATTTTCCATTTTTTTGAAAAGTTTTCTTCGAGCTCTTGGCTCGCAAATCTGAGGTTTTGTTAGACCCTACGGAAAATTAGGGTTTCGAAGAGCATTTCAGTATGCCTTCGGTACCAATTGATCTCTTCCTGCACCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCATCGTCGCATCGTCTTAAGCGGCTTGAAAAGGGTGATCGGCGTGGTAATCTTAGTTAACATGGGGTTCTTTTAGCGCTTTTCGTGCTCTATTCGTATTCTTCAGCCTTCTCTTCTCCTCCTTGCTCTTGGTTCGTTCGAGATTTGGAATTCCTAGAGAAATTAGAGTTGTAAGGTAAGGATTTATTTGTTTTGATCTTGAGGTCTTTTAGCGGTCGAAGCCTCTGAGAAGCGAGTCACTGGCAATTGGCTACTCGTTGAGAGGGGTTTTGCAATCCTACTATTGTGCGAGGTATTGTGCTATAATCTTTTTATATTCTTACTAAGAATTTTACAGGCATAA mRNA sequence ATGAAATGGGCTTTCAGATATGGAGACGCTGTCCAACAGGAAATGGGCTTTAAGAGAAGGAGGCCCAGCCCAATAGGAAAGCATTGGAAATATCTGAAAACAAATAAATCAGCGAATTGTCAAAGGAAGAAAACGTGTAGAGCTTTGATTCGGCCTCACAGCTATATCTATGAGACCGATTCATTTATCTTGACCCAAAGGATTAGTTCCGTAAGATCCCAATTCCGCCACTATTTTCGACCTCATCCTCCCAAAATTATCCGATCCGCTTCCGCTGCCGCTGCAACGCCGCTGATCTTTTGCAGCATTATGCCTTCGGTACCAATTGATCTCTTCCTGCACCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCATCGTCGCATCGTCTTAAGCGGCTTGAAAAGGGTGATCGGCGTGCGGTCGAAGCCTCTGAGAAGCGAGTCACTGGCAATTGGCTACTCGTTGAGAGGGGTTTTGCAATCCTACTATTGTGCGAGGCATAA Coding sequence (CDS) ATGAAATGGGCTTTCAGATATGGAGACGCTGTCCAACAGGAAATGGGCTTTAAGAGAAGGAGGCCCAGCCCAATAGGAAAGCATTGGAAATATCTGAAAACAAATAAATCAGCGAATTGTCAAAGGAAGAAAACGTGTAGAGCTTTGATTCGGCCTCACAGCTATATCTATGAGACCGATTCATTTATCTTGACCCAAAGGATTAGTTCCGTAAGATCCCAATTCCGCCACTATTTTCGACCTCATCCTCCCAAAATTATCCGATCCGCTTCCGCTGCCGCTGCAACGCCGCTGATCTTTTGCAGCATTATGCCTTCGGTACCAATTGATCTCTTCCTGCACCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCATCGTCGCATCGTCTTAAGCGGCTTGAAAAGGGTGATCGGCGTGCGGTCGAAGCCTCTGAGAAGCGAGTCACTGGCAATTGGCTACTCGTTGAGAGGGGTTTTGCAATCCTACTATTGTGCGAGGCATAA Protein sequence MKWAFRYGDAVQQEMGFKRRRPSPIGKHWKYLKTNKSANCQRKKTCRALIRPHSYIYETDSFILTQRISSVRSQFRHYFRPHPPKIIRSASAAAATPLIFCSIMPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASEKRVTGNWLLVERGFAILLLCEA
Homology
BLAST of CmoCh14G001570.1 vs. ExPASy TrEMBL
Match: A0A5D3DN94 (BRI1-KD interacting protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001860 PE=4 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 1.2e-09 Identity = 36/44 (81.82%), Postives = 38/44 (86.36%), Query Frame = 0
Query: 104 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASE 148
MPS IDL+L PLLPSLTSFHGGSSSHRLKRLEKGDRR + A E
Sbjct: 1 MPSETIDLYLRPLLPSLTSFHGGSSSHRLKRLEKGDRRGLAAIE 44
BLAST of CmoCh14G001570.1 vs. ExPASy TrEMBL
Match: A0A1S3B5I5 (uncharacterized protein LOC103486406 OS=Cucumis melo OX=3656 GN=LOC103486406 PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 1.0e-08 Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0
Query: 104 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRR 142
MPS IDL+L PLLPSLTSFHGGSSSHRLKRLEKGDRR
Sbjct: 1 MPSETIDLYLRPLLPSLTSFHGGSSSHRLKRLEKGDRR 38
BLAST of CmoCh14G001570.1 vs. ExPASy TrEMBL
Match: A0A314UVH6 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_07868 PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08 Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0
Query: 104 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAV 144
MPSVPI L L PL+P+LTSFHGGSSSHRLKR+EK DRRA+
Sbjct: 1 MPSVPIQLLLRPLVPNLTSFHGGSSSHRLKRMEKSDRRAL 40
BLAST of CmoCh14G001570.1 vs. ExPASy TrEMBL
Match: A0A314XYQ7 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_28489 PE=4 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 6.6e-08 Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0
Query: 104 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAV 144
MPSVPI L PL+P+LTSFHGGSSSHRLKR+EK DRRA+
Sbjct: 1 MPSVPIQFLLRPLVPNLTSFHGGSSSHRLKRMEKSDRRAL 40
BLAST of CmoCh14G001570.1 vs. ExPASy TrEMBL
Match: A0A498IEK4 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_004478 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 5.5e-07 Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0
Query: 104 MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASE 148
MPSVP L L P +P+LTSFHGGS SHRLKRLEKGDRR + E
Sbjct: 1 MPSVPTHLLLRPSVPNLTSFHGGSCSHRLKRLEKGDRRGFKKFE 44
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DN94 | 1.2e-09 | 81.82 | BRI1-KD interacting protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A1S3B5I5 | 1.0e-08 | 89.47 | uncharacterized protein LOC103486406 OS=Cucumis melo OX=3656 GN=LOC103486406 PE=... | [more] |
| A0A314UVH6 | 2.3e-08 | 80.00 | Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_078... | [more] |
| A0A314XYQ7 | 6.6e-08 | 77.50 | Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_284... | [more] |
| A0A498IEK4 | 5.5e-07 | 70.45 | Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_004478 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmoCh14G001570.1:exon:5259 | CmoCh14G001570.1:exon:5259 | exon |
| CmoCh14G001570.1:exon:5258 | CmoCh14G001570.1:exon:5258 | exon |
| CmoCh14G001570.1:exon:5257 | CmoCh14G001570.1:exon:5257 | exon |
| CmoCh14G001570.1:exon:5256 | CmoCh14G001570.1:exon:5256 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmoCh14G001570.1:cds | CmoCh14G001570.1:cds_4 | CDS |
| CmoCh14G001570.1:cds | CmoCh14G001570.1:cds_3 | CDS |
| CmoCh14G001570.1:cds | CmoCh14G001570.1:cds_2 | CDS |
| CmoCh14G001570.1:cds | CmoCh14G001570.1:cds | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CmoCh14G001570.1 | CmoCh14G001570.1-protein | polypeptide |
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005694 |
chromosome |
| molecular_function |
GO:0005488 |
binding |
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