CmoCh14G001460.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G001460.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	H/ACA ribonucleoprotein complex subunit 4-like
Location	Cmo_Chr14: 639542 .. 641284 (+)
Sequence length	1743
RNA-Seq Expression	CmoCh14G001460.1
Synteny	CmoCh14G001460.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGCGTTGAGATTTCTCGTTCGGAGAAGAAAAAGAAGAAGCACCGGAGTAAGGATGACGAAGTGTCACCGGCTGTCGGTTCTGATGAGCAGCCGCCAAAGGACGTTGCCGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTGGATACATCTCAATGGCCTATTCTTTTGAAGAACTATGATCGTCTCAATGTGCGTACCGGTCACTACACTCCTCTGCCGTCCGGTTTCTCCCCACTCAAGCGGCCTCTGGCTGACTACATCAGGTATGGTATTCTCAATCTTGATAAACCGGCGAATCCATCGTCGCACGAAGTTGTGGCTTGGATTAAAAGAATTCTTCGGGTTGAGAAAACGGGTCATAGTGGTACTCTCGACCCGAAGGTTACTGGGAACCTGATAGTGTGCATTGATCGAGCCACGCGGCTCGTGAAATCGCAACAGGGTGCGGGTAAGGAGTATGTGTGTGTTGCTCGATTGCATTCTTCTGTGCCCGATGTTTCTAAGGTGGCTCGGGCTTTGGAGACGCTCACCGGGGCTGTGTTTCAGAGGCCGCCGTTGATATCGGCTGTGAAACGACAGCTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCTGGAACTTATGTTAGGACGCTATGTGTGCACTTGGGTCTGATTCTTGGCGTTGGAGGGCATATGCAAGAACTTAGGAGGGTGAGATCTGGGATCTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTCAAAGATGAGAGCTACTTGAGGAGAGTAATTATGCCACTTGAGGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCAGGGCTGTTGAGATTTGAGAACGATATTGAGGTTGGGGAAGAAGTTGTACTCATGACCACCAAGGGTGAAGCCATTGCTCTTGGTATTGCAGAGATGACTACTTCTGTGATGGCAACTTGTGATCATGGTGTAGTTGCAAAGATCAAAAGGGTTGTGATGGACCGAGATACTTACCCAAGGAAATGGGGATTAGGTCCAAGGGCATCAATGAAGAAAAAACTTATTGGAGAAGGGAAGTTGGACAAGCATGGAAAACCGAATGAGAAAACTCCTTCGGAGTGGATGAGGAATTTGGTTTTACCCACTGGTGGGGATTCTTTGGTTGCTAGCGTGTTTGCTTCTGACTCTGCAACTGTTGATGAGGGTAAGCAAGAGACAGAAAAAGATGGTGGAGGGCGGAAGCGAAAACTTGATGAAGAAACCGAAGCTGCTCCTGCAAAGAAACTGAAAGCTGAAAAGACTGAAGATGCCGAAGAAGTTGAAGAAGGCGGGAAGAAAGAAAAGAAGAAGAAGAAGAAAGACAAAGAGAAGGGTAGTGGTGAACCTTCGGACGAGGAGAATACTGTGCGGTTGGAGAAGAAAAAGAAGAAGAAGGACAAAGAGGGTAAAGAAGCAGGTACACCGGAGGAGACACAGAAGTCGGAGAAAAAAAAAAAGAAGAAAGATAAGGAATCTGGTGTTGGTGATGTTCAAAATGGGGAAGCAGATGATCATGTTGATGGGAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAATAAAGAAGATGCAGAAGAGTAA

mRNA sequence

ATGTCGGGCGTTGAGATTTCTCGTTCGGAGAAGAAAAAGAAGAAGCACCGGAGTAAGGATGACGAAGTGTCACCGGCTGTCGGTTCTGATGAGCAGCCGCCAAAGGACGTTGCCGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTGGATACATCTCAATGGCCTATTCTTTTGAAGAACTATGATCGTCTCAATGTGCGTACCGGTCACTACACTCCTCTGCCGTCCGGTTTCTCCCCACTCAAGCGGCCTCTGGCTGACTACATCAGGTATGGTATTCTCAATCTTGATAAACCGGCGAATCCATCGTCGCACGAAGTTGTGGCTTGGATTAAAAGAATTCTTCGGGTTGAGAAAACGGGTCATAGTGGTACTCTCGACCCGAAGGTTACTGGGAACCTGATAGTGTGCATTGATCGAGCCACGCGGCTCGTGAAATCGCAACAGGGTGCGGGTAAGGAGTATGTGTGTGTTGCTCGATTGCATTCTTCTGTGCCCGATGTTTCTAAGGTGGCTCGGGCTTTGGAGACGCTCACCGGGGCTGTGTTTCAGAGGCCGCCGTTGATATCGGCTGTGAAACGACAGCTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCTGGAACTTATGTTAGGACGCTATGTGTGCACTTGGGTCTGATTCTTGGCGTTGGAGGGCATATGCAAGAACTTAGGAGGGTGAGATCTGGGATCTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTCAAAGATGAGAGCTACTTGAGGAGAGTAATTATGCCACTTGAGGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCAGGGCTGTTGAGATTTGAGAACGATATTGAGGTTGGGGAAGAAGTTGTACTCATGACCACCAAGGGTGAAGCCATTGCTCTTGGTATTGCAGAGATGACTACTTCTGTGATGGCAACTTGTGATCATGGTGTAGTTGCAAAGATCAAAAGGGTTGTGATGGACCGAGATACTTACCCAAGGAAATGGGGATTAGGTCCAAGGGCATCAATGAAGAAAAAACTTATTGGAGAAGGGAAGTTGGACAAGCATGGAAAACCGAATGAGAAAACTCCTTCGGAGTGGATGAGGAATTTGGTTTTACCCACTGGTGGGGATTCTTTGGTTGCTAGCGTGTTTGCTTCTGACTCTGCAACTGTTGATGAGGGTAAGCAAGAGACAGAAAAAGATGGTGGAGGGCGGAAGCGAAAACTTGATGAAGAAACCGAAGCTGCTCCTGCAAAGAAACTGAAAGCTGAAAAGACTGAAGATGCCGAAGAAGTTGAAGAAGGCGGGAAGAAAGAAAAGAAGAAGAAGAAGAAAGACAAAGAGAAGGGTAGTGGTGAACCTTCGGACGAGGAGAATACTGTGCGGTTGGAGAAGAAAAAGAAGAAGAAGGACAAAGAGGGTAAAGAAGCAGGTACACCGGAGGAGACACAGAAGTCGGAGAAAAAAAAAAAGAAGAAAGATAAGGAATCTGGTGTTGGTGATGTTCAAAATGGGGAAGCAGATGATCATGTTGATGGGAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAATAAAGAAGATGCAGAAGAGTAA

Coding sequence (CDS)

ATGTCGGGCGTTGAGATTTCTCGTTCGGAGAAGAAAAAGAAGAAGCACCGGAGTAAGGATGACGAAGTGTCACCGGCTGTCGGTTCTGATGAGCAGCCGCCAAAGGACGTTGCCGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTGGATACATCTCAATGGCCTATTCTTTTGAAGAACTATGATCGTCTCAATGTGCGTACCGGTCACTACACTCCTCTGCCGTCCGGTTTCTCCCCACTCAAGCGGCCTCTGGCTGACTACATCAGGTATGGTATTCTCAATCTTGATAAACCGGCGAATCCATCGTCGCACGAAGTTGTGGCTTGGATTAAAAGAATTCTTCGGGTTGAGAAAACGGGTCATAGTGGTACTCTCGACCCGAAGGTTACTGGGAACCTGATAGTGTGCATTGATCGAGCCACGCGGCTCGTGAAATCGCAACAGGGTGCGGGTAAGGAGTATGTGTGTGTTGCTCGATTGCATTCTTCTGTGCCCGATGTTTCTAAGGTGGCTCGGGCTTTGGAGACGCTCACCGGGGCTGTGTTTCAGAGGCCGCCGTTGATATCGGCTGTGAAACGACAGCTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGATAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCTGGAACTTATGTTAGGACGCTATGTGTGCACTTGGGTCTGATTCTTGGCGTTGGAGGGCATATGCAAGAACTTAGGAGGGTGAGATCTGGGATCTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTCAAAGATGAGAGCTACTTGAGGAGAGTAATTATGCCACTTGAGGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCAGGGCTGTTGAGATTTGAGAACGATATTGAGGTTGGGGAAGAAGTTGTACTCATGACCACCAAGGGTGAAGCCATTGCTCTTGGTATTGCAGAGATGACTACTTCTGTGATGGCAACTTGTGATCATGGTGTAGTTGCAAAGATCAAAAGGGTTGTGATGGACCGAGATACTTACCCAAGGAAATGGGGATTAGGTCCAAGGGCATCAATGAAGAAAAAACTTATTGGAGAAGGGAAGTTGGACAAGCATGGAAAACCGAATGAGAAAACTCCTTCGGAGTGGATGAGGAATTTGGTTTTACCCACTGGTGGGGATTCTTTGGTTGCTAGCGTGTTTGCTTCTGACTCTGCAACTGTTGATGAGGGTAAGCAAGAGACAGAAAAAGATGGTGGAGGGCGGAAGCGAAAACTTGATGAAGAAACCGAAGCTGCTCCTGCAAAGAAACTGAAAGCTGAAAAGACTGAAGATGCCGAAGAAGTTGAAGAAGGCGGGAAGAAAGAAAAGAAGAAGAAGAAGAAAGACAAAGAGAAGGGTAGTGGTGAACCTTCGGACGAGGAGAATACTGTGCGGTTGGAGAAGAAAAAGAAGAAGAAGGACAAAGAGGGTAAAGAAGCAGGTACACCGGAGGAGACACAGAAGTCGGAGAAAAAAAAAAAGAAGAAAGATAAGGAATCTGGTGTTGGTGATGTTCAAAATGGGGAAGCAGATGATCATGTTGATGGGAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAATAAAGAAGATGCAGAAGAGTAA

Protein sequence

MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEKKKKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE

Homology

[Close]

BLAST of CmoCh14G001460.1 vs. ExPASy Swiss-Prot
Match: Q9LD90 (H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF5 PE=1 SV=1)

HSP 1 Score: 771.2 bits (1990), Expect = 8.5e-222
Identity = 428/586 (73.04%), Postives = 484/586 (82.59%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           M+ V+IS S KKKK+ ++++D              D  D+MIKPQSFTP +DTSQWPILL
Sbjct: 1   MAEVDISHS-KKKKQDKTENDAA------------DTGDYMIKPQSFTPAIDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTP+ +G SPLKRPL +YIRYG++NLDKPANPSSHEVVAWIKRILRVE
Sbjct: 61  KNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHS+VPDV+KVARALE+L
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAD+HLVVFW+SCEAGTY+RT+CVHLGL+
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLL 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGE +NMVTMHDVMDAQ+VYDN +DESYLRRVIMPLE++LTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDI+VG EVVLMTTKGEAIA+GIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLI +GKLDKHGKPNEKTP EW RN+
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNV 420

Query: 421 VLPTGGDSLVASVFASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTE--D 480
           VLPTGGD+++A   A+      +   E  + G  RKRK D+ +++      K  KT+  +
Sbjct: 421 VLPTGGDAIIAGAAAAPEEI--KADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTKEVE 480

Query: 481 AEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPE-ETQKSE 540
            EE EE  K  KKKKKKDKE+      ++E     EKK+KKK K+ KE    E  + KSE
Sbjct: 481 GEEAEEKVKSSKKKKKKDKEE------EKEEEAGSEKKEKKKKKDKKEEVIEEVASPKSE 540

Query: 541 KKKKKKDKESGVG-DVQNGEADDHVDGSEKKKKKKKKNK--EDAEE 581
           KKKKKK K++    D ++  A +  +  +KKK KKKKNK  ED EE
Sbjct: 541 KKKKKKSKDTEAAVDAEDESAAEKSEKKKKKKDKKKKNKDSEDDEE 565

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BLAST of CmoCh14G001460.1 vs. ExPASy Swiss-Prot
Match: Q54T81 (Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=nola4 PE=1 SV=1)

HSP 1 Score: 615.5 bits (1586), Expect = 6.0e-175
Identity = 333/566 (58.83%), Postives = 422/566 (74.56%), Query Frame = 0


Query: 14  KKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHY 73
           KK +SK  E S              + +IKP+  TP +DTS+WP+LLKNYD+L+VRTGHY
Sbjct: 5   KKSKSKSSEKS----------TQEVEQVIKPEK-TPILDTSKWPLLLKNYDQLSVRTGHY 64

Query: 74  TPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVT 133
           TP+P+G SPLKRP+ +Y++YGI+NLDKP+NPSSHEVVAWI+ ILRV KTGHSGTLDPKVT
Sbjct: 65  TPIPNGHSPLKRPIKEYVKYGIINLDKPSNPSSHEVVAWIRTILRVTKTGHSGTLDPKVT 124

Query: 134 GNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISA 193
           G LIVCI+RATRLVKSQQGAGKEY+ + RLH ++   +++++A++TLTGA+FQRPP  SA
Sbjct: 125 GCLIVCIERATRLVKSQQGAGKEYIGIVRLHGAIEGTTELSKAVDTLTGALFQRPPQKSA 184

Query: 194 VKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRV 253
           VK++LR+RTI+ SKLLE+D +++L + W+ CEAGTY+RTLCVH+GL++GVGGHMQELRRV
Sbjct: 185 VKKRLRVRTIHNSKLLEFDPERNLGLIWVDCEAGTYIRTLCVHIGLLMGVGGHMQELRRV 244

Query: 254 RSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAI 313
           RSGI+ EK   VTMHDV DAQ+ YDN KDESYLRRVI PLE +LT+YKR+VVKDSA+NAI
Sbjct: 245 RSGIMSEKKGQVTMHDVKDAQYEYDNSKDESYLRRVIQPLEAILTNYKRIVVKDSAINAI 304

Query: 314 CYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRV 373
           CYGAKLMIPGLLR+E DIE  EEVVL+TTKGEAIA+GIA+MTT+ MATCDHGVVA IKRV
Sbjct: 305 CYGAKLMIPGLLRYEQDIESNEEVVLITTKGEAIAIGIAQMTTASMATCDHGVVATIKRV 364

Query: 374 VMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASV 433
           +MDRD YP +WGLGP+A +KK++I +GKLDK GKPNEKTPS+W       TG  +   + 
Sbjct: 365 IMDRDVYPVRWGLGPKAKVKKEMIKDGKLDKFGKPNEKTPSDWTNTYTYYTGQVATTTTT 424

Query: 434 FASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKK 493
              +S  VD  K+ T                A+ A K + E +ED + V +  KK+KK+K
Sbjct: 425 SPVESMNVDTPKKAT----------------ASVAVKAEVESSEDEKPVPKKEKKDKKEK 484

Query: 494 KKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEA-----GTPEETQKSEKKKKKKDKESG 553
           KKD    S + S+EE + + +KK+KK+ KE KE       + +E+ K EKK KK+ K S 
Sbjct: 485 KKD---SSDDESEEEKSSKKDKKEKKEKKEKKEKKSSKDDSDDESSKKEKKDKKRKKSSD 540

Query: 554 VGDVQNGEADDHVDGSEKKKKKKKKN 575
                  E+ D  D  +KK+KKK KN
Sbjct: 545 KDSDSEKESSDKKDKKDKKEKKKSKN 540

[Close]

BLAST of CmoCh14G001460.1 vs. ExPASy Swiss-Prot
Match: Q9ESX5 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 608.6 bits (1568), Expect = 7.3e-173
Identity = 314/513 (61.21%), Postives = 396/513 (77.19%), Query Frame = 0


Query: 14  KKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHY 73
           KKH+ K D   P    D    +   +F+IKP+S    +DTSQWP+LLKN+D+LNVRT HY
Sbjct: 11  KKHKKKKDR-KPLQEDDVAEIQHAEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHY 70

Query: 74  TPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVT 133
           TPLP G +PLKR + DYIR G +NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVT
Sbjct: 71  TPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVT 130

Query: 134 GNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISA 193
           G LIVCI+RATRLVKSQQ AGKEYV + RLH+++   ++++RALETLTGA+FQRPPLI+A
Sbjct: 131 GCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAA 190

Query: 194 VKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRV 253
           VKRQLR+RTIYESK++EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRV
Sbjct: 191 VKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRV 250

Query: 254 RSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAI 313
           RSG++ EKD+MVTMHDV+DAQW+YDN KDESYLRRV+ PLE +LTS+KRLV+KDSAVNAI
Sbjct: 251 RSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAI 310

Query: 314 CYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRV 373
           CYGAK+M+PGLLR+E+ IEV +E+V++TTKGEAI + IA MTT+V++TCDHG+VAKIKRV
Sbjct: 311 CYGAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRV 370

Query: 374 VMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLV--LPTGGDSLV- 433
           +M+RDTYPRKWGLGP+AS KK +I +G LDKHGKP + TP+ W ++ +    +G ++LV 
Sbjct: 371 IMERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQDYIDYSDSGKNTLVT 430

Query: 434 ----ASVFASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGG 493
               A   A+++  V + K+++E +         +ET   P  K K              
Sbjct: 431 EAVQAPQLAAEAVNVIKRKRDSESE--------SDETPTVPQLKEK-------------- 490

Query: 494 KKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKK 520
           KK+K KK K   +  GE  D +N    +KKKKK
Sbjct: 491 KKKKDKKPKTVLESGGETGDGDNDTTKKKKKKK 500

[Close]

BLAST of CmoCh14G001460.1 vs. ExPASy Swiss-Prot
Match: Q5ZJH9 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE=2 SV=1)

HSP 1 Score: 608.2 bits (1567), Expect = 9.6e-173
Identity = 328/517 (63.44%), Postives = 403/517 (77.95%), Query Frame = 0


Query: 14  KKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHY 73
           KK R KD    P    D    +   +F+IKP+S    +DTSQWP+LLKN+D+LNV T HY
Sbjct: 10  KKRRKKDKRSLP--DEDVADIQHTEEFLIKPESRVAQLDTSQWPLLLKNFDKLNVLTTHY 69

Query: 74  TPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVT 133
           TPLPSG +PLKR ++DY+R G +NLDKP+NPSSHEVVAWI+RILRVEKTGHSGTLDPKVT
Sbjct: 70  TPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVT 129

Query: 134 GNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISA 193
           G LIVCI+RATRLVKSQQ AGKEYV + RLH+++   +++ARA+ETLTGA+FQRPPLI+A
Sbjct: 130 GCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLTGALFQRPPLIAA 189

Query: 194 VKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRV 253
           VKRQLR+RTIYESKL+EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRV
Sbjct: 190 VKRQLRVRTIYESKLVEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRV 249

Query: 254 RSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAI 313
           RSGILGE DNMVTMHDV+DAQW YDN KD+SYLRRVI+PLE +LTS+KRLV+KDSAVNAI
Sbjct: 250 RSGILGEMDNMVTMHDVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHKRLVMKDSAVNAI 309

Query: 314 CYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRV 373
           CYGAK+M+PG+LR+E+ IE+ +E+V++TTKGEAI L IA MTT+V++TCDHGVVAKIKRV
Sbjct: 310 CYGAKIMLPGVLRYEDGIELKQEIVVITTKGEAICLAIALMTTAVISTCDHGVVAKIKRV 369

Query: 374 VMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASV 433
           +M+RDTYPRKWGLGP+AS KK +I +G LDKHGKPNE TP  W +  V     D   +S 
Sbjct: 370 IMERDTYPRKWGLGPKASQKKMMIQKGLLDKHGKPNECTPDSWKKEYV-----DYRESS- 429

Query: 434 FASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKK 493
              ++A V +   E E+     KRK + E+E        +  T   EE+ +  KK+KKK+
Sbjct: 430 -KKEAAKVPQAVSEVER---APKRKRESESENEAVSPPPSPATPPPEELSKKEKKKKKKE 489

Query: 494 KKDKEKG-SGEPSDE--ENTVRLEKKKKKKDKEGKEA 528
           KK KE   SGE   E    +   +KKKKKK KE +E+
Sbjct: 490 KKAKEAAESGEEQVEVISESSAKKKKKKKKQKEVEES 514

[Close]

BLAST of CmoCh14G001460.1 vs. ExPASy Swiss-Prot
Match: O60832 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=1 SV=3)

HSP 1 Score: 602.1 bits (1551), Expect = 6.9e-171
Identity = 318/525 (60.57%), Postives = 401/525 (76.38%), Query Frame = 0


Query: 6   ISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDR 65
           + +  KKKK+ +S  +E       D    +   +F+IKP+S    +DTSQWP+LLKN+D+
Sbjct: 9   LPKKHKKKKERKSLPEE-------DVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDK 68

Query: 66  LNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHS 125
           LNVRT HYTPL  G +PLKR + DYIR G +NLDKP+NPSSHEVVAWI+RILRVEKTGHS
Sbjct: 69  LNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHS 128

Query: 126 GTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVF 185
           GTLDPKVTG LIVCI+RATRLVKSQQ AGKEYV + RLH+++   ++++RALETLTGA+F
Sbjct: 129 GTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALF 188

Query: 186 QRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGG 245
           QRPPLI+AVKRQLR+RTIYESK++EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG
Sbjct: 189 QRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGG 248

Query: 246 HMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVV 305
            MQELRRVRSG++ EKD+MVTMHDV+DAQW+YDN KDESYLRRV+ PLE +LTS+KRLV+
Sbjct: 249 QMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVM 308

Query: 306 KDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHG 365
           KDSAVNAICYGAK+M+PG+LR+E+ IEV +E+V++TTKGEAI + IA MTT+V++TCDHG
Sbjct: 309 KDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHG 368

Query: 366 VVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLV--LP 425
           +VAKIKRV+M+RDTYPRKWGLGP+AS KK +I +G LDKHGKP + TP+ W +  V    
Sbjct: 369 IVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYSE 428

Query: 426 TGGDSLVASVFASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVE 485
           +    +VA V  +     +  K  T K    RKR+ + E++  P                
Sbjct: 429 SAKKEVVAEVVKAPQVVAEAAK--TAK----RKRESESESDETP------------PAAP 488

Query: 486 EGGKKEKKKKKKDKEKGSG-----EPSDEENTVRLEKKKKKKDKE 524
           +  KKEKKK KKDK+  +G     EP D ++    +KKKKKK KE
Sbjct: 489 QLIKKEKKKSKKDKKAKAGLESGAEPGDGDSDTTKKKKKKKKAKE 508

[Close]

BLAST of CmoCh14G001460.1 vs. ExPASy TrEMBL
Match: A0A6J1F3Q2 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111441884 PE=3 SV=1)

HSP 1 Score: 1102.0 bits (2849), Expect = 0.0e+00
Identity = 580/580 (100.00%), Postives = 580/580 (100.00%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420

Query: 421 VLPTGGDSLVASVFASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAE 480
           VLPTGGDSLVASVFASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAE
Sbjct: 421 VLPTGGDSLVASVFASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAE 480

Query: 481 EVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEKKK 540
           EVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEKKK
Sbjct: 481 EVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEKKK 540

Query: 541 KKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 581
           KKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE
Sbjct: 541 KKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 580

[Close]

BLAST of CmoCh14G001460.1 vs. ExPASy TrEMBL
Match: A0A6J1J6M3 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111481852 PE=3 SV=1)

HSP 1 Score: 1078.9 bits (2789), Expect = 0.0e+00
Identity = 573/581 (98.62%), Postives = 575/581 (98.97%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTP VDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPSVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420

Query: 421 VLPTGGDSLVASVFASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAE 480
           VLPTGGDSLVASVFA+DSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAE
Sbjct: 421 VLPTGGDSLVASVFATDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAE 480

Query: 481 EVEEGGKKE-KKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEKK 540
           EVEEGGKKE KKKKKKDKEKGSGEPSDEENT + E KKKKKDKEGKEAGTPEE QKSEKK
Sbjct: 481 EVEEGGKKEKKKKKKKDKEKGSGEPSDEENTEQSE-KKKKKDKEGKEAGTPEEKQKSEKK 540

Query: 541 KKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 581
           KKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE
Sbjct: 541 KKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 580

[Close]

BLAST of CmoCh14G001460.1 vs. ExPASy TrEMBL
Match: A0A6J1CVU2 (H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC111015035 PE=3 SV=1)

HSP 1 Score: 1003.4 bits (2593), Expect = 3.8e-289
Identity = 534/586 (91.13%), Postives = 556/586 (94.88%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           MS VEISRSEKKKKKHRSKD++VSPAVGSDEQP KD ADFMIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSEVEISRSEKKKKKHRSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTPLPSG+SPLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSSVPDV+KV+RALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTT+VMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAE 480
           VLPTGGDSLVAS FA+D+A  DEGKQETEKDGGGRKRKLDE+ EAAP KKLK EK E+AE
Sbjct: 421 VLPTGGDSLVASHFAADAA--DEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAE 480

Query: 481 EVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEKKK 540
           EV+E GKKEKKKKKKDKEKG+ EP+DEEN  + EKKKKKKDKE KEAGTP ET+KSEKKK
Sbjct: 481 EVDEVGKKEKKKKKKDKEKGNVEPADEENVEKSEKKKKKKDKEAKEAGTP-ETEKSEKKK 540

Query: 541 KKKDKESG------VGDVQNGEADDHVDGSEKKKKKKKKNKEDAEE 581
           KKKDKESG         +QNGEAD HVDGSEKKKKKKKKNK DAEE
Sbjct: 541 KKKDKESGNDHSQSPAGIQNGEADGHVDGSEKKKKKKKKNK-DAEE 582

[Close]

BLAST of CmoCh14G001460.1 vs. ExPASy TrEMBL
Match: A0A6J1FP65 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111446978 PE=3 SV=1)

HSP 1 Score: 979.2 bits (2530), Expect = 7.6e-282
Identity = 527/584 (90.24%), Postives = 547/584 (93.66%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           MS VEISRSEKKKKKHRSKD+EVSP VGSDEQP KDVADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPL DYIRYGILNLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHS+VPDV+KVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDSATVDEG-KQETEKDGGGRKRKLDEETE-AAPAKKLKAEKTED 480
           VLPTGGDSLVASVFASD+AT  +    + EKDG GRKRK DEETE AAPAKKLK EK E+
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKVEE 480

Query: 481 AEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGK-EAGTPEETQKSE 540
           AEE+EE GKKEKKKKKKDKEKG  E SD+E   + EKKKKKKDK+ K EAGTPE  +  +
Sbjct: 481 AEEIEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKDKDAKEEAGTPETEKSEK 540

Query: 541 KKKKKKDKESGVGDVQNGEADDHVD-GSEKKKKKKKKNKEDAEE 581
           KKKKKKDKESG  D QNGEA+ HVD GSEKKKKKKKKNKE+A+E
Sbjct: 541 KKKKKKDKESG-NDTQNGEAEGHVDGGSEKKKKKKKKNKEEADE 583

[Close]

BLAST of CmoCh14G001460.1 vs. ExPASy TrEMBL
Match: A0A6J1I1U9 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111470135 PE=3 SV=1)

HSP 1 Score: 970.3 bits (2507), Expect = 3.5e-279
Identity = 520/580 (89.66%), Postives = 539/580 (92.93%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           MS VEISRSEKKKKKHRSKD+EVSP V SDEQP KDVADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTPLPSGFSPLKRPL DYIRYGILNLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHS+VPDV+KVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDSATVDEG-KQETEKDGGGRKRKLDEETE-AAPAKKLKAEKTED 480
           VLPTGGDSLVASVFASD+AT  +    + EKDG G+KRK DEETE AAPAKKLK EK E+
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480

Query: 481 AEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEK 540
           AEEVEE GKKEKKKKKKDKEKG  E SD+E   + EKKKKKKDK+ KEAGTPE  +  +K
Sbjct: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKPEKKKKKKDKDAKEAGTPETEKSEKK 540

Query: 541 KKKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKEDA 579
           KKKKKDKESG  D QNGEAD HVDG     +KKKKNKE+A
Sbjct: 541 KKKKKDKESG-NDTQNGEADGHVDGG---SEKKKKNKEEA 576

[Close]

BLAST of CmoCh14G001460.1 vs. TAIR 10
Match: AT3G57150.1 (homologue of NAP57 )

HSP 1 Score: 771.2 bits (1990), Expect = 6.1e-223
Identity = 428/586 (73.04%), Postives = 484/586 (82.59%), Query Frame = 0


Query: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60
           M+ V+IS S KKKK+ ++++D              D  D+MIKPQSFTP +DTSQWPILL
Sbjct: 1   MAEVDISHS-KKKKQDKTENDAA------------DTGDYMIKPQSFTPAIDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120
           KNYDRLNVRTGHYTP+ +G SPLKRPL +YIRYG++NLDKPANPSSHEVVAWIKRILRVE
Sbjct: 61  KNYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHS+VPDV+KVARALE+L
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAD+HLVVFW+SCEAGTY+RT+CVHLGL+
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLL 240

Query: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGILGE +NMVTMHDVMDAQ+VYDN +DESYLRRVIMPLE++LTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDI+VG EVVLMTTKGEAIA+GIAEMTTSVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMA 360

Query: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420
           TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLI +GKLDKHGKPNEKTP EW RN+
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNV 420

Query: 421 VLPTGGDSLVASVFASDSATVDEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTE--D 480
           VLPTGGD+++A   A+      +   E  + G  RKRK D+ +++      K  KT+  +
Sbjct: 421 VLPTGGDAIIAGAAAAPEEI--KADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTKEVE 480

Query: 481 AEEVEEGGKKEKKKKKKDKEKGSGEPSDEENTVRLEKKKKKKDKEGKEAGTPE-ETQKSE 540
            EE EE  K  KKKKKKDKE+      ++E     EKK+KKK K+ KE    E  + KSE
Sbjct: 481 GEEAEEKVKSSKKKKKKDKEE------EKEEEAGSEKKEKKKKKDKKEEVIEEVASPKSE 540

Query: 541 KKKKKKDKESGVG-DVQNGEADDHVDGSEKKKKKKKKNK--EDAEE 581
           KKKKKK K++    D ++  A +  +  +KKK KKKKNK  ED EE
Sbjct: 541 KKKKKKSKDTEAAVDAEDESAAEKSEKKKKKKDKKKKNKDSEDDEE 565

[Close]

BLAST of CmoCh14G001460.1 vs. TAIR 10
Match: AT5G14460.1 (Pseudouridine synthase family protein )

HSP 1 Score: 96.7 bits (239), Expect = 6.7e-20
Identity = 62/202 (30.69%), Postives = 99/202 (49.01%), Query Frame = 0


Query: 95  ILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 154
           +L ++KP   +S  V   ++R+++V+K GH+GTLDP  TG LIVC+ +AT++V   QG  
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382

Query: 155 KEYVCVARLHSSVPDV-----------------SKVARALETLTGAVFQRPPLISAVK-- 214
           K Y  V RL  +   +                   + +AL +  G ++Q PP+ SA+K  
Sbjct: 383 KGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVG 442

Query: 215 ------RQLRIRTIYES----KLLEYDADKHL-----VVFWISCEAGTYVRTLCVHLGLI 263
                 +  R  T+  S     + ++D ++ L     ++F + C  GTY+R+LC  L   
Sbjct: 443 GEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKA 502

The following BLAST results are available for this feature:

BLAST of CmoCh14G001460.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD90	8.5e-222	73.04	H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF...	[more]
Q54T81	6.0e-175	58.83	Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum O...	[more]
Q9ESX5	7.3e-173	61.21	H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE...	[more]
Q5ZJH9	9.6e-173	63.44	H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE...	[more]
O60832	6.9e-171	60.57	H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=...	[more]

BLAST of CmoCh14G001460.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F3Q2	0.0e+00	100.00	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J6M3	0.0e+00	98.62	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1CVU2	3.8e-289	91.13	H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1FP65	7.6e-282	90.24	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I1U9	3.5e-279	89.66	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CmoCh14G001460.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57150.1	6.1e-223	73.04	homologue of NAP57	[more]
AT5G14460.1	6.7e-20	30.69	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 561..580
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 86..292 e-value: 1.6E-182 score: 607.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 442..565
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 395..415
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 395..412
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 437..580
None	No IPR available	PANTHER	PTHR23127:SF3	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4	coord: 8..579
None	No IPR available	PROSITE	PS50890	PUA	coord: 300..375 score: 19.093502
None	No IPR available	CDD	cd02572	PseudoU_synth_hDyskerin	coord: 92..274 e-value: 5.33048E-134 score: 386.232
IPR012960	Dyskerin-like	SMART	SM01136	DKCLD_2	coord: 52..110 e-value: 7.1E-33 score: 125.2
IPR012960	Dyskerin-like	PFAM	PF08068	DKCLD	coord: 53..110 e-value: 1.1E-30 score: 105.4
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 301..375 e-value: 2.1E-24 score: 97.1
IPR002478	PUA domain	PFAM	PF01472	PUA	coord: 301..373 e-value: 9.8E-22 score: 76.7
IPR004521	Uncharacterised domain CHP00451	TIGRFAM	TIGR00451	TIGR00451	coord: 297..372 e-value: 9.8E-9 score: 33.4
IPR002501	Pseudouridine synthase II, N-terminal	PFAM	PF01509	TruB_N	coord: 114..230 e-value: 1.1E-19 score: 71.3
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 53..384 e-value: 1.6E-182 score: 607.8
IPR004802	tRNA pseudouridine synthase B family	TIGRFAM	TIGR00425	TIGR00425	coord: 60..385 e-value: 6.4E-161 score: 532.8
IPR004802	tRNA pseudouridine synthase B family	PANTHER	PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5	coord: 8..579
IPR032819	tRNA pseudouridylate synthase B, C-terminal	PFAM	PF16198	TruB_C_2	coord: 231..297 e-value: 1.2E-22 score: 79.8
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 53..298
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 300..381

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh14G001460	CmoCh14G001460	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G001460.1:exon:5977	CmoCh14G001460.1:exon:5977	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G001460.1:cds	CmoCh14G001460.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh14G001460.1	CmoCh14G001460.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0006396	RNA processing
biological_process	GO:0000495	box H/ACA RNA 3'-end processing
biological_process	GO:1990481	mRNA pseudouridine synthesis
biological_process	GO:0031118	rRNA pseudouridine synthesis
biological_process	GO:0031120	snRNA pseudouridine synthesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding