|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTTCTGTTGCATCCTTCATCTGTGTTTCAAGTTCGATTTCAAGTTGTGGGGTTCAGTGACGGGTTCTGATCTACGCTTTTCGATTGGGGTTTTCTCGGGTTTTTAGTTGTTGGAGGGGTGTTCTTGCGATTCAGGCCTGTGCGAGGGGTTTTGTTTCGTGGAGCTGTTGGGATTTACTCGCAAGTTCGTGAAGCGACTGGTAATTCATCTAGGGTTGTGGTCTGCTTTTCAATTTTGGGGTTTGTAGATGGTCAAATCTCGGGGGGTTTTGTTGTACTTGGGTTATTTGCAAAGAAACGAGTATTTGGATTGGATCTAATTGCTCTCTTTTCGTAATTTATACTACTGACTTATAGTTCATTTAAAATACAAAAAAATTGTTCTGATTCGTTCGTACTTTTCCTTATATTGTTATTGTCTTGTGGGTTAATTCGTGAGTTACTGAATGGACGTGTTGGTATTGAGTTCATCGGAGTGGTGATAAATTTTCGCTCTTGGTGCTCTCGAATTTCTCCAGGGTTTGGCCTGAATGAATGATTTGGCGTGATTAATCTATTGCAGAGGTGTATGATTACGTGCTGAATTAGTGACTGTGTTCTTGAAGAAGCAGAATTTATCCAAGGCGCTGCTGAAGCAGGAGGGTGGTTCATATAA mRNA sequence ATGTTCTGTTGCATCCTTCATCTGTGTTTCAAGTTCGATTTCAAGTTGTGGGGTTCAGTGACGGGTTCTGATCTACGCTTTTCGATTGGGGTTTTCTCGGTTGTTGGAGGGGTGTTCTTGCGATTCAGGCCTGTGCGAGGGGTTTTGTTTCGTGGAGCTGTTGGGATTTACTCGCAAGTTCGTGAAGCGACTGAATTTATCCAAGGCGCTGCTGAAGCAGGAGGGTGGTTCATATAA Coding sequence (CDS) ATGTTCTGTTGCATCCTTCATCTGTGTTTCAAGTTCGATTTCAAGTTGTGGGGTTCAGTGACGGGTTCTGATCTACGCTTTTCGATTGGGGTTTTCTCGGTTGTTGGAGGGGTGTTCTTGCGATTCAGGCCTGTGCGAGGGGTTTTGTTTCGTGGAGCTGTTGGGATTTACTCGCAAGTTCGTGAAGCGACTGAATTTATCCAAGGCGCTGCTGAAGCAGGAGGGTGGTTCATATAA Protein sequence MFCCILHLCFKFDFKLWGSVTGSDLRFSIGVFSVVGGVFLRFRPVRGVLFRGAVGIYSQVREATEFIQGAAEAGGWFI
Homology
BLAST of CmoCh11G016340.1 vs. ExPASy TrEMBL
Match: A0A0A0L8P3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G589560 PE=4 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04 Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 0 Query: 6 LHLCFKFDFKLWGSVTGSDLRFSIGVF---SVVGGVFLRFRPVRGVLFRGAVGIYSQVRE 65 L+LC FDFK S+ SDL SIG F S+V G RF V GVLFR A IYS+V + Sbjct: 87 LYLCLNFDFKFSASLAASDLPSSIGFFLSSSLVLGFLFRFNSVPGVLFRRAPRIYSKVCQ 146
BLAST of CmoCh11G016340.1 vs. NCBI nr
Match: KGN58198.1 (hypothetical protein Csa_017459 [Cucumis sativus]) HSP 1 Score: 54.7 bits (130), Expect = 4.2e-04 Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 0 Query: 6 LHLCFKFDFKLWGSVTGSDLRFSIGVF---SVVGGVFLRFRPVRGVLFRGAVGIYSQVRE 65 L+LC FDFK S+ SDL SIG F S+V G RF V GVLFR A IYS+V + Sbjct: 87 LYLCLNFDFKFSASLAASDLPSSIGFFLSSSLVLGFLFRFNSVPGVLFRRAPRIYSKVCQ 146
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L8P3 | 2.0e-04 | 53.23 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G589560 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KGN58198.1 | 4.2e-04 | 53.23 | hypothetical protein Csa_017459 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CmoCh11G016340.1:exon:10284 | CmoCh11G016340.1:exon:10284 | exon |
CmoCh11G016340.1:exon:10285 | CmoCh11G016340.1:exon:10285 | exon |
CmoCh11G016340.1:exon:10286 | CmoCh11G016340.1:exon:10286 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
CmoCh11G016340.1:cds | CmoCh11G016340.1:cds | CDS |
CmoCh11G016340.1:cds | CmoCh11G016340.1:cds_2 | CDS |
CmoCh11G016340.1:cds | CmoCh11G016340.1:cds_3 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
CmoCh11G016340.1 | CmoCh11G016340.1-protein | polypeptide |
|