CmoCh11G016340 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G016340
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr11: 11626823 .. 11627478 (+)
RNA-Seq ExpressionCmoCh11G016340
SyntenyCmoCh11G016340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTGTTGCATCCTTCATCTGTGTTTCAAGTTCGATTTCAAGTTGTGGGGTTCAGTGACGGGTTCTGATCTACGCTTTTCGATTGGGGTTTTCTCGGGTTTTTAGTTGTTGGAGGGGTGTTCTTGCGATTCAGGCCTGTGCGAGGGGTTTTGTTTCGTGGAGCTGTTGGGATTTACTCGCAAGTTCGTGAAGCGACTGGTAATTCATCTAGGGTTGTGGTCTGCTTTTCAATTTTGGGGTTTGTAGATGGTCAAATCTCGGGGGGTTTTGTTGTACTTGGGTTATTTGCAAAGAAACGAGTATTTGGATTGGATCTAATTGCTCTCTTTTCGTAATTTATACTACTGACTTATAGTTCATTTAAAATACAAAAAAATTGTTCTGATTCGTTCGTACTTTTCCTTATATTGTTATTGTCTTGTGGGTTAATTCGTGAGTTACTGAATGGACGTGTTGGTATTGAGTTCATCGGAGTGGTGATAAATTTTCGCTCTTGGTGCTCTCGAATTTCTCCAGGGTTTGGCCTGAATGAATGATTTGGCGTGATTAATCTATTGCAGAGGTGTATGATTACGTGCTGAATTAGTGACTGTGTTCTTGAAGAAGCAGAATTTATCCAAGGCGCTGCTGAAGCAGGAGGGTGGTTCATATAA

mRNA sequence

ATGTTCTGTTGCATCCTTCATCTGTGTTTCAAGTTCGATTTCAAGTTGTGGGGTTCAGTGACGGGTTCTGATCTACGCTTTTCGATTGGGGTTTTCTCGGTTGTTGGAGGGGTGTTCTTGCGATTCAGGCCTGTGCGAGGGGTTTTGTTTCGTGGAGCTGTTGGGATTTACTCGCAAGTTCGTGAAGCGACTGAATTTATCCAAGGCGCTGCTGAAGCAGGAGGGTGGTTCATATAA

Coding sequence (CDS)

ATGTTCTGTTGCATCCTTCATCTGTGTTTCAAGTTCGATTTCAAGTTGTGGGGTTCAGTGACGGGTTCTGATCTACGCTTTTCGATTGGGGTTTTCTCGGTTGTTGGAGGGGTGTTCTTGCGATTCAGGCCTGTGCGAGGGGTTTTGTTTCGTGGAGCTGTTGGGATTTACTCGCAAGTTCGTGAAGCGACTGAATTTATCCAAGGCGCTGCTGAAGCAGGAGGGTGGTTCATATAA

Protein sequence

MFCCILHLCFKFDFKLWGSVTGSDLRFSIGVFSVVGGVFLRFRPVRGVLFRGAVGIYSQVREATEFIQGAAEAGGWFI
Homology
[Close]
BLAST of CmoCh11G016340 vs. ExPASy TrEMBL
Match: A0A0A0L8P3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G589560 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 0 

Query: 6   LHLCFKFDFKLWGSVTGSDLRFSIGVF---SVVGGVFLRFRPVRGVLFRGAVGIYSQVRE 65
           L+LC  FDFK   S+  SDL  SIG F   S+V G   RF  V GVLFR A  IYS+V +
Sbjct: 87  LYLCLNFDFKFSASLAASDLPSSIGFFLSSSLVLGFLFRFNSVPGVLFRRAPRIYSKVCQ 146

[Close]
BLAST of CmoCh11G016340 vs. NCBI nr
Match: KGN58198.1 (hypothetical protein Csa_017459 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-04
Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 0 

Query: 6   LHLCFKFDFKLWGSVTGSDLRFSIGVF---SVVGGVFLRFRPVRGVLFRGAVGIYSQVRE 65
           L+LC  FDFK   S+  SDL  SIG F   S+V G   RF  V GVLFR A  IYS+V +
Sbjct: 87  LYLCLNFDFKFSASLAASDLPSSIGFFLSSSLVLGFLFRFNSVPGVLFRRAPRIYSKVCQ 146

The following BLAST results are available for this feature:
BLAST of CmoCh11G016340 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh11G016340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8P32.0e-0453.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G589560 PE=4 SV=1[more]
BLAST of CmoCh11G016340 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58198.14.2e-0453.23hypothetical protein Csa_017459 [Cucumis sativus][more]
BLAST of CmoCh11G016340 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G016340.1CmoCh11G016340.1mRNA