CmoCh06G008130.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G008130.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr06: 4402954 .. 4403390 (-)
Sequence length	363
RNA-Seq Expression	CmoCh06G008130.1
Synteny	CmoCh06G008130.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAAATCGAACTGCCGAAAAGAGGGCTTCTACGAACTTCGTTCGCTGAAAATTCCCGTTATTCTCGTCCAACAAAAGTACAATATGTCTCAATGGATTCGGTCGAAACCCCGAGGACAATAAGAACCTCCTCTCAAATTCAATGGAGTTCTGTAGATCGCCGTCGCAGAAGTAGTGATCCTCTTTATCGAAGAGGCCGTCGAGATACAATTAACTCAAAAGGGAGATAAACAAAACCCTTAAAGCTCCCAAAGCAACAAGCAAGCACCAAGAGTCTTCAGCCCGATCATTAAAAAAATTCAACAGAATCAGAAATCTAATCTTCTCAAATCTACCCAACAGAAGAACAGCAGCAGCGAGAGATCGGATCCTCAAATCAACACCAGTCGTCAAGCAGCAATCGAAATCCAGGAAACCCGGTGGCGGGAGATGA

mRNA sequence

ATGGAACAAATCGAACTGCCGAAAAGAGGGCTTCTACGAACTTCGTTCGCTGAAAATTCCCGTTATTCTCGTCCAACAAAAGTACAATATGTCTCAATGGATTCGGTCGAAACCCCGAGGACAATAAGAACCTCCTCTCAAATTCAATGGAGTTCTGTAGATCGCCGTCGCAGAACTCCCAAAGCAACAAGCAAGCACCAAGAGTCTTCAGCCCGATCATTAAAAAAATTCAACAGAATCAGAAATCTAATCTTCTCAAATCTACCCAACAGAAGAACAGCAGCAGCGAGAGATCGGATCCTCAAATCAACACCAGTCGTCAAGCAGCAATCGAAATCCAGGAAACCCGGTGGCGGGAGATGA

Coding sequence (CDS)

ATGGAACAAATCGAACTGCCGAAAAGAGGGCTTCTACGAACTTCGTTCGCTGAAAATTCCCGTTATTCTCGTCCAACAAAAGTACAATATGTCTCAATGGATTCGGTCGAAACCCCGAGGACAATAAGAACCTCCTCTCAAATTCAATGGAGTTCTGTAGATCGCCGTCGCAGAACTCCCAAAGCAACAAGCAAGCACCAAGAGTCTTCAGCCCGATCATTAAAAAAATTCAACAGAATCAGAAATCTAATCTTCTCAAATCTACCCAACAGAAGAACAGCAGCAGCGAGAGATCGGATCCTCAAATCAACACCAGTCGTCAAGCAGCAATCGAAATCCAGGAAACCCGGTGGCGGGAGATGA

Protein sequence

MEQIELPKRGLLRTSFAENSRYSRPTKVQYVSMDSVETPRTIRTSSQIQWSSVDRRRRTPKATSKHQESSARSLKKFNRIRNLIFSNLPNRRTAAARDRILKSTPVVKQQSKSRKPGGGR

Homology

The following BLAST results are available for this feature:

BLAST of CmoCh06G008130.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G008130.1 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G008130.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..74

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G008130	CmoCh06G008130	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G008130.1:exon:4579	CmoCh06G008130.1:exon:4579	exon
CmoCh06G008130.1:exon:4578	CmoCh06G008130.1:exon:4578	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G008130.1:cds	CmoCh06G008130.1:cds_2	CDS
CmoCh06G008130.1:cds	CmoCh06G008130.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G008130.1	CmoCh06G008130.1-protein	polypeptide