CmoCh06G000200.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000200.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Cmo_Chr06: 136432 .. 139947 (+)
Sequence length	2432
RNA-Seq Expression	CmoCh06G000200.1
Synteny	CmoCh06G000200.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAAGAAGAAGAAGTGTTTTTCTTTTTATTCTTTTCTTTCCTTATTTATTTTTTCTACCAATTATTTTGACATTTTCATGAAAATCAGTATAATGGCTTACTAATTTATTTTTAAAATTATAACAACATATTTATTTATTAATTTATAGTTTTCTAAAAGTATGTATGCAATATTTTTATAAAATTATTTAAGCAAGCAGCTATGCTTTAAACCTTGGTCCGAGTCCACCGCCTGATATAAAGAACGGGAGTCCAACACACGAAAGGGTTTTTAGGGTTTAACACCAACAACGTCTCTGCCGCGCCTATTTCGATCCCCCCTCCCTCCCTCTCCTTTCCACTCTTACACCTCTGCTACTAACCTCTTCACTCCTATTATCATCTCATCATGTGGGCTCTTCGTAGAGCTTCGACTCCTCTCAGGTATGCTTCTCGTCTTCTAACTGCACCTCTCCGCTTATTTACCTTACCTTCTTTATTCCTTAATGCCAATACATTTCTTTTCAATCTTCTTGTCACTACACACTTTCATTCACTATTTCTGCAACTAAGATTCTTGCTTGCTTCTCATCCACTTTCCGGTGCTCATCACAGAAGGAAATAATGTAAAAACTTGTGTGTCATTTTTTTCTGTTTTTATTCGCATTCAAGCTCAAATCTGAAGCTTCGTTATTTCTACAATTTAAATGCTTCTGGGTTTCACAATCTATCTTCACAGTTGTCGGCCTATTATCAAGGGGGGATTTCCTTTTCTCTCTGTAAGGAAGAACAAGTTTGGGGGATGTCAGTTTCCCGAAATCATCCATTATTAATCATTCAAACGACTGTTTTTGTATGTATGTATTTCTGTATGTGTAATATATGTACCTGTATATTGCGGTAACCGGTGCGGAGGGTACGATGCCTCCAATTTTTCATATCCCTCTCTCAATTTTTTGTGTTCTCTTTCTAGGAATCAAGGATATAGAATAAGAACTTCGTATGTCTTTGGCAAACTAGAGGCGCCATATTCTTGCGATGGAAATATAGTTGGTTCGGCTATCATCCCTGCTATATCTGATAGATGCATTTCTTTTGAGAGAAATAACCTTGCAACATGGCGGTCCTCTGGGCTTTCTATTAGCAGCCATGGTCTATCTTCACAAGCTGGTGCTGAGAACAGTGGAGAGGAAGATGACTTGGAAGATGGGTTTTCTGAACTTGAAACACTTCCAAGCACTAATGCACTTGAAGATAATAAAGCAGCTGATGAAAATGAAGGGGAATTAACCTCTGAATCAGAACTTGATGATGATGGGACTCAAAATGAACTGGATTTACCTGAGGTTGAAACTGAGCTTGGTGAAAAGATATCTGCGAAAAGGGCTCCTTCAGAGCTGTTCAAGGCTATTTGGAGTGCTCCGGGTTTATCTGTTCCCAGTGCACTGGACAAGTGGGTCAGTGAAGGAAAAGAATTAAGCCGTGCTGACATCTCTCTGGCTATGCTCAATCTTCGAAGACGTCGAATGTTTGGGAAGGCTTTGCAGGTAAATTGACTTGATTTTACTTCTTCAAGCAATGGAATTCATTCCTATGGTTTTAGGTTTATAGTTAATCTCGTCACTCTTGGGATTTGCAGAACTCTATAAAGTATATGTGACTAGCGGACACAATGGTTTCAGGATGGTAATATTGATAAATCTCTAAGAAATACCATAATCAGTAGTAATGTAATGCGGTCTAACAAACACAAAATGATTTCAAGAAGTACCACTATCAAATGCTTGTATAGAAATTTGTTAAGCTGGCTTATGGCATTCAATAAATGGTGCCAGAACCGCGTATAGAATTTTCAGATGGCTTGATATTAGGTTGAGCTGCATGTAACTGCTTGATTTATTAGTATATATGAATTTTGCATTTATTATTGTTAGTCTTATAAAAGCCATTATTGGTAAGAAAATGGTTATGCGAGTTTTAGCCAGTTTATCGACCAAGAATTTTGTAGCTACCGTATTTTAAAAATATTTTGCCTATTTGTTCAACATTCTTATTCATCATTTCTTCAACTCATTACTTGCATTGCTATATGGGTTTCACAGTTTTCAGAGTGGTTGGAAGCAAGTGGACAACTTGAGTTCGTTGACAGAGACTATGCTTCTCGCCTTGACTTGATTGCAAAGGTACATGGTCTCCATAGGGCAGAAGGTTACATCGCCAAAATCCCGAAATCATTCCAGGGGGAGGTGATATACCGAACTCTTTTGGCTAACTGTGTGGTCGCCAACAATGTAAAAAAAGCAGAGGAAGTATTTAACAAAATGAAGGACCTTGAATTTCCAATCACAGCCTTTGCTTGCAACCAGTTGCTTCTTCTTTACAAGAGACTTGACAAGAGGAAAATAGCCGACGTTCTGTTGTTGATGGAGAAAGAAAATGTCAAGCCTTCTCTGTTTACTTACAAGATCCTAATAGATGCTAAAGGCCTTTCAAATGACATGGTGGGTATGGAACAAGTTGTTGATACAATGAAGGCTGAAGGAATCGAACTTGATGTAAATACACTTTCCATATTAGCGAAGCACTATGCTTCAGGTGGGCTTAAAGACAAAGCCAAGGCCATCTTGAAGGAGATGGAAGATGTGAGCTCCAAAGAATCTCGATGGCCTTGCAGACTTTTACTTCCCCTTTATGGAGAACTACAAATGGAAGATGAAGTGAGGAGGGTCTGGAAGCTCTGCGAGGCTAATCCTCGCATTGAAGAATGCATGGCTGCCATTGTTGCATGGGGAAAGCTGAAGAACGTCCAAGAAGCAGAGGAAATTTTTGATAGAGTTTTAAAAACATGGAAGAAGCTTTCCTCGAAACAATACTCTACCATGTTGAAGGTTTATGCAGACAATAAGATGCTGACGAAGGGCAAGGATCTAGTCAAGCAGATGGCAGACAGCGGTTGCCGAATCGGTCCATTAACATGGGATGCAGTTGTGAAACTCTATGTGGAAGCTGGGGAGGTAGAAAAGGCAGATTCTTTCTTGCAGAAGGCGGTCCAGAAAAACCAGATGAAGCCATTGTTTACATCTTACATGGTTATCCTGGATCAGTATGCAAGGAGGGGTGACGTCCACAATGCGGAGAAAATGTTTCATAGGATGAGACTATCAGGTTACGTGGCTAGATTCAGCCCGTTTCAAGCTCTAATACAGGCATACATTAATGCCAAGGCTCCAGCCTACGGCATGAAAGAGAGAATGAAGGCAGATAATGTGTTTCCAAACAAAGCTTTGGCAGGAAAATTAGCCCAAATCGATGCATTCAGGAAGACAGCAGTGTCGGATTTGCTTGACTGAGGAATTTAATTTGATACTTTTGGATGTATAAACTCCTCGGATTTCAACTCTATTTTACAAATCAAGTATTTGTTAGTTAATCTGGTGGCTGCGCTTTGAAATTTGACAGCAGAACTACACAATGGATTGTGCTGCAGGTGTTATAATATATTTTGTTTGTTCGAATACCCATTATTACCAAGAA

mRNA sequence

AGAAGAAGAAGAAGAAGTGTTTTTCTTTTTATTCTTTTCTTTCCTTATTTATTTTTTCTACCAATTATTTTGACATTTTCATGAAAATCAGTATAATGGCTTACTAATTTATTTTTAAAATTATAACAACATATTTATTTATTAATTTATAGTTTTCTAAAAGTATGTATGCAATATTTTTATAAAATTATTTAAGCAAGCAGCTATGCTTTAAACCTTGGTCCGAGTCCACCGCCTGATATAAAGAACGGGAGTCCAACACACGAAAGGGTTTTTAGGGTTTAACACCAACAACGTCTCTGCCGCGCCTATTTCGATCCCCCCTCCCTCCCTCTCCTTTCCACTCTTACACCTCTGCTACTAACCTCTTCACTCCTATTATCATCTCATCATGTGGGCTCTTCGTAGAGCTTCGACTCCTCTCAGGAATCAAGGATATAGAATAAGAACTTCGTATGTCTTTGGCAAACTAGAGGCGCCATATTCTTGCGATGGAAATATAGTTGGTTCGGCTATCATCCCTGCTATATCTGATAGATGCATTTCTTTTGAGAGAAATAACCTTGCAACATGGCGGTCCTCTGGGCTTTCTATTAGCAGCCATGGTCTATCTTCACAAGCTGGTGCTGAGAACAGTGGAGAGGAAGATGACTTGGAAGATGGGTTTTCTGAACTTGAAACACTTCCAAGCACTAATGCACTTGAAGATAATAAAGCAGCTGATGAAAATGAAGGGGAATTAACCTCTGAATCAGAACTTGATGATGATGGGACTCAAAATGAACTGGATTTACCTGAGGTTGAAACTGAGCTTGGTGAAAAGATATCTGCGAAAAGGGCTCCTTCAGAGCTGTTCAAGGCTATTTGGAGTGCTCCGGGTTTATCTGTTCCCAGTGCACTGGACAAGTGGGTCAGTGAAGGAAAAGAATTAAGCCGTGCTGACATCTCTCTGGCTATGCTCAATCTTCGAAGACGTCGAATGTTTGGGAAGGCTTTGCAGTTTTCAGAGTGGTTGGAAGCAAGTGGACAACTTGAGTTCGTTGACAGAGACTATGCTTCTCGCCTTGACTTGATTGCAAAGGTACATGGTCTCCATAGGGCAGAAGGTTACATCGCCAAAATCCCGAAATCATTCCAGGGGGAGGTGATATACCGAACTCTTTTGGCTAACTGTGTGGTCGCCAACAATGTAAAAAAAGCAGAGGAAGTATTTAACAAAATGAAGGACCTTGAATTTCCAATCACAGCCTTTGCTTGCAACCAGTTGCTTCTTCTTTACAAGAGACTTGACAAGAGGAAAATAGCCGACGTTCTGTTGTTGATGGAGAAAGAAAATGTCAAGCCTTCTCTGTTTACTTACAAGATCCTAATAGATGCTAAAGGCCTTTCAAATGACATGGTGGGTATGGAACAAGTTGTTGATACAATGAAGGCTGAAGGAATCGAACTTGATGTAAATACACTTTCCATATTAGCGAAGCACTATGCTTCAGGTGGGCTTAAAGACAAAGCCAAGGCCATCTTGAAGGAGATGGAAGATGTGAGCTCCAAAGAATCTCGATGGCCTTGCAGACTTTTACTTCCCCTTTATGGAGAACTACAAATGGAAGATGAAGTGAGGAGGGTCTGGAAGCTCTGCGAGGCTAATCCTCGCATTGAAGAATGCATGGCTGCCATTGTTGCATGGGGAAAGCTGAAGAACGTCCAAGAAGCAGAGGAAATTTTTGATAGAGTTTTAAAAACATGGAAGAAGCTTTCCTCGAAACAATACTCTACCATGTTGAAGGTTTATGCAGACAATAAGATGCTGACGAAGGGCAAGGATCTAGTCAAGCAGATGGCAGACAGCGGTTGCCGAATCGGTCCATTAACATGGGATGCAGTTGTGAAACTCTATGTGGAAGCTGGGGAGGTAGAAAAGGCAGATTCTTTCTTGCAGAAGGCGGTCCAGAAAAACCAGATGAAGCCATTGTTTACATCTTACATGGTTATCCTGGATCAGTATGCAAGGAGGGGTGACGTCCACAATGCGGAGAAAATGTTTCATAGGATGAGACTATCAGGTTACGTGGCTAGATTCAGCCCGTTTCAAGCTCTAATACAGGCATACATTAATGCCAAGGCTCCAGCCTACGGCATGAAAGAGAGAATGAAGGCAGATAATGTGTTTCCAAACAAAGCTTTGGCAGGAAAATTAGCCCAAATCGATGCATTCAGGAAGACAGCAGTGTCGGATTTGCTTGACTGAGGAATTTAATTTGATACTTTTGGATGTATAAACTCCTCGGATTTCAACTCTATTTTACAAATCAAGTATTTGTTAGTTAATCTGGTGGCTGCGCTTTGAAATTTGACAGCAGAACTACACAATGGATTGTGCTGCAGGTGTTATAATATATTTTGTTTGTTCGAATACCCATTATTACCAAGAA

Coding sequence (CDS)

ATGTGGGCTCTTCGTAGAGCTTCGACTCCTCTCAGGAATCAAGGATATAGAATAAGAACTTCGTATGTCTTTGGCAAACTAGAGGCGCCATATTCTTGCGATGGAAATATAGTTGGTTCGGCTATCATCCCTGCTATATCTGATAGATGCATTTCTTTTGAGAGAAATAACCTTGCAACATGGCGGTCCTCTGGGCTTTCTATTAGCAGCCATGGTCTATCTTCACAAGCTGGTGCTGAGAACAGTGGAGAGGAAGATGACTTGGAAGATGGGTTTTCTGAACTTGAAACACTTCCAAGCACTAATGCACTTGAAGATAATAAAGCAGCTGATGAAAATGAAGGGGAATTAACCTCTGAATCAGAACTTGATGATGATGGGACTCAAAATGAACTGGATTTACCTGAGGTTGAAACTGAGCTTGGTGAAAAGATATCTGCGAAAAGGGCTCCTTCAGAGCTGTTCAAGGCTATTTGGAGTGCTCCGGGTTTATCTGTTCCCAGTGCACTGGACAAGTGGGTCAGTGAAGGAAAAGAATTAAGCCGTGCTGACATCTCTCTGGCTATGCTCAATCTTCGAAGACGTCGAATGTTTGGGAAGGCTTTGCAGTTTTCAGAGTGGTTGGAAGCAAGTGGACAACTTGAGTTCGTTGACAGAGACTATGCTTCTCGCCTTGACTTGATTGCAAAGGTACATGGTCTCCATAGGGCAGAAGGTTACATCGCCAAAATCCCGAAATCATTCCAGGGGGAGGTGATATACCGAACTCTTTTGGCTAACTGTGTGGTCGCCAACAATGTAAAAAAAGCAGAGGAAGTATTTAACAAAATGAAGGACCTTGAATTTCCAATCACAGCCTTTGCTTGCAACCAGTTGCTTCTTCTTTACAAGAGACTTGACAAGAGGAAAATAGCCGACGTTCTGTTGTTGATGGAGAAAGAAAATGTCAAGCCTTCTCTGTTTACTTACAAGATCCTAATAGATGCTAAAGGCCTTTCAAATGACATGGTGGGTATGGAACAAGTTGTTGATACAATGAAGGCTGAAGGAATCGAACTTGATGTAAATACACTTTCCATATTAGCGAAGCACTATGCTTCAGGTGGGCTTAAAGACAAAGCCAAGGCCATCTTGAAGGAGATGGAAGATGTGAGCTCCAAAGAATCTCGATGGCCTTGCAGACTTTTACTTCCCCTTTATGGAGAACTACAAATGGAAGATGAAGTGAGGAGGGTCTGGAAGCTCTGCGAGGCTAATCCTCGCATTGAAGAATGCATGGCTGCCATTGTTGCATGGGGAAAGCTGAAGAACGTCCAAGAAGCAGAGGAAATTTTTGATAGAGTTTTAAAAACATGGAAGAAGCTTTCCTCGAAACAATACTCTACCATGTTGAAGGTTTATGCAGACAATAAGATGCTGACGAAGGGCAAGGATCTAGTCAAGCAGATGGCAGACAGCGGTTGCCGAATCGGTCCATTAACATGGGATGCAGTTGTGAAACTCTATGTGGAAGCTGGGGAGGTAGAAAAGGCAGATTCTTTCTTGCAGAAGGCGGTCCAGAAAAACCAGATGAAGCCATTGTTTACATCTTACATGGTTATCCTGGATCAGTATGCAAGGAGGGGTGACGTCCACAATGCGGAGAAAATGTTTCATAGGATGAGACTATCAGGTTACGTGGCTAGATTCAGCCCGTTTCAAGCTCTAATACAGGCATACATTAATGCCAAGGCTCCAGCCTACGGCATGAAAGAGAGAATGAAGGCAGATAATGTGTTTCCAAACAAAGCTTTGGCAGGAAAATTAGCCCAAATCGATGCATTCAGGAAGACAGCAGTGTCGGATTTGCTTGACTGA

Protein sequence

MWALRRASTPLRNQGYRIRTSYVFGKLEAPYSCDGNIVGSAIIPAISDRCISFERNNLATWRSSGLSISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSESELDDDGTQNELDLPEVETELGEKISAKRAPSELFKAIWSAPGLSVPSALDKWVSEGKELSRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHRAEGYIAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLYKRLDKRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVDTMKAEGIELDVNTLSILAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQMEDEVRRVWKLCEANPRIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVHNAEKMFHRMRLSGYVARFSPFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQIDAFRKTAVSDLLD

Homology

[Close]

BLAST of CmoCh06G000200.1 vs. ExPASy Swiss-Prot
Match: Q9C977 (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80270 PE=2 SV=1)

HSP 1 Score: 644.4 bits (1661), Expect = 1.3e-183
Identity = 329/574 (57.32%), Postives = 444/574 (77.35%), Query Frame = 0


Query: 52  SFERNNLATWRSSGL-------SISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTNAL 111
           SF+ N++A+ +   +       S+S+  LSS AG ++  EEDDLEDGFSELE    + + 
Sbjct: 34  SFDSNSIASTKREAVPRFYEISSLSNRALSSSAGTKSDQEEDDLEDGFSELE---GSKSG 93

Query: 112 EDNKAADENEGELTSESELDDDGTQNELDLPEVETELGEKISAKRAPSELFKAIWSAPGL 171
           + + ++DE+EG+L+++ E      + ELDL  +ET++  K + ++  SELFK I SAPGL
Sbjct: 94  QGSTSSDEDEGKLSADEE-----EEEELDL--IETDVSRK-TVEKKQSELFKTIVSAPGL 153

Query: 172 SVPSALDKWVSEGKELSRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASR 231
           S+ SALDKWV EG E++R +I+ AML LRRRRM+G+ALQ SEWLEA+ ++E  +RDYASR
Sbjct: 154 SIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDYASR 213

Query: 232 LDLIAKVHGLHRAEGYIAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPI 291
           LDL  K+ GL + E  + KIPKSF+GEV+YRTLLANCV A NVKK+E VFNKMKDL FP+
Sbjct: 214 LDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLGFPL 273

Query: 292 TAFACNQLLLLYKRLDKRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVD 351
           + F C+Q+LLL+KR+D++KIADVLLLMEKEN+KPSL TYKILID KG +ND+ GMEQ+++
Sbjct: 274 SGFTCDQMLLLHKRIDRKKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISGMEQILE 333

Query: 352 TMKAEGIELDVNTLSILAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQ 411
           TMK EG+ELD  T ++ A+HY+  GLKDKA+ +LKEME  S + +R   + LL +Y  L 
Sbjct: 334 TMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSIYASLG 393

Query: 412 MEDEVRRVWKLCEANPRIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTML 471
            EDEV+R+WK+CE+ P  EE +AAI A+GKL  VQEAE IF++++K  ++ SS  YS +L
Sbjct: 394 REDEVKRIWKICESKPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSSTYSVLL 453

Query: 472 KVYADNKMLTKGKDLVKQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQM 531
           +VY D+KML+KGKDLVK+MA+SGCRI   TWDA++KLYVEAGEVEKADS L KA +++  
Sbjct: 454 RVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKASKQSHT 513

Query: 532 KPLFTSYMVILDQYARRGDVHNAEKMFHRMRLSGYVARFSPFQALIQAYINAKAPAYGMK 591
           K +  S+M I+D+Y++RGDVHN EK+F +MR +GY +R   FQAL+QAYINAK+PAYGM+
Sbjct: 514 KLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYINAKSPAYGMR 573

Query: 592 ERMKADNVFPNKALAGKLAQIDAFRKTAVSDLLD 619
           +R+KADN+FPNK++A +LAQ D F+KTA+SD+LD
Sbjct: 574 DRLKADNIFPNKSMAAQLAQGDPFKKTAISDILD 596

[Close]

BLAST of CmoCh06G000200.1 vs. ExPASy Swiss-Prot
Match: Q9XI21 (Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g15480 PE=2 SV=2)

HSP 1 Score: 640.2 bits (1650), Expect = 2.4e-182
Identity = 337/608 (55.43%), Postives = 444/608 (73.03%), Query Frame = 0


Query: 12  RNQGYRI-RTSYVFGKLEAPYSCDGNIVGSAIIPAISDRCISFERNNLATWRSSGLSISS 71
           R+Q  R+   + V+ KL+ P       + S  +  I D+  +  R    +W S   S   
Sbjct: 10  RSQSLRLGACNAVYSKLDIPLGERNIAIESNAL--IHDKHEALPRFYELSWSS---STGR 69

Query: 72  HGLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSESELDDDGTQN 131
             LSS AGA+ +G++DDLED   +L T        D  ++D  +GE  S  E D +G + 
Sbjct: 70  RSLSSDAGAKTTGDDDDLEDKNVDLAT-------PDETSSDSEDGEEFSGDEGDIEGAEL 129

Query: 132 ELDLPEVETELGEKISAKRAPSELFKAIWSAPGLSVPSALDKWVSEGKELSRADISLAML 191
           EL +PE            + PSE+FKAI S  GLSV SALDKWV +GK+ +R +   AML
Sbjct: 130 ELHVPE-----------SKRPSEMFKAIVSVSGLSVGSALDKWVEQGKDTNRKEFESAML 189

Query: 192 NLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHRAEGYIAKIPKSFQG 251
            LR+RRMFG+ALQ +EWL+ + Q E  +RDYA RLDLI+KV G ++ E YI  IP+SF+G
Sbjct: 190 QLRKRRMFGRALQMTEWLDENKQFEMEERDYACRLDLISKVRGWYKGEAYIKTIPESFRG 249

Query: 252 EVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLYKRLDKRKIADVLLL 311
           E++YRTLLAN V  +NV+ AE VFNKMKDL FP++ F CNQ+L+LYKR+DK+KIADVLLL
Sbjct: 250 ELVYRTLLANHVATSNVRTAEAVFNKMKDLGFPLSTFTCNQMLILYKRVDKKKIADVLLL 309

Query: 312 MEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVDTMKAEGIELDVNTLSILAKHYASGGL 371
           +EKEN+KP+L TYKILID KG SND+ GMEQ+V+TMK+EG+ELD+   +++A+HYAS GL
Sbjct: 310 LEKENLKPNLNTYKILIDTKGSSNDITGMEQIVETMKSEGVELDLRARALIARHYASAGL 369

Query: 372 KDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQMEDEVRRVWKLCEANPRIEECMAAIV 431
           K+KA+ +LKEME  S +E+R  C+ LL +YG LQ EDEVRRVWK+CE NPR  E +AAI+
Sbjct: 370 KEKAEKVLKEMEGESLEENRHMCKDLLSVYGYLQREDEVRRVWKICEENPRYNEVLAAIL 429

Query: 432 AWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMADSGCRI 491
           A+GK+  V++AE +F++VLK   ++SS  YS +L+VY D+KM+++GKDLVKQM+DSGC I
Sbjct: 430 AFGKIDKVKDAEAVFEKVLKMSHRVSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNI 489

Query: 492 GPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVHNAEKM 551
           G LTWDAV+KLYVEAGEVEKA+S L KA+Q  Q+KPL +S+M ++ +Y RRGDVHN EK+
Sbjct: 490 GALTWDAVIKLYVEAGEVEKAESSLSKAIQSKQIKPLMSSFMYLMHEYVRRGDVHNTEKI 549

Query: 552 FHRMRLSGYVARFSPFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQIDAFRK 611
           F RM+ +GY +RF  +Q LIQAY+NAKAPAYGMKERMKADN+FPNK LA +LA+ D F+K
Sbjct: 550 FQRMKQAGYQSRFWAYQTLIQAYVNAKAPAYGMKERMKADNIFPNKRLAAQLAKADPFKK 594

Query: 612 TAVSDLLD 619
           T +SDLLD
Sbjct: 610 TPLSDLLD 594

[Close]

BLAST of CmoCh06G000200.1 vs. ExPASy Swiss-Prot
Match: Q9LRP6 (Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g15590 PE=1 SV=1)

HSP 1 Score: 535.0 bits (1377), Expect = 1.1e-150
Identity = 275/549 (50.09%), Postives = 398/549 (72.50%), Query Frame = 0


Query: 71  HGLSSQAGAENSGEEDDLEDGFSEL-ETLPSTNALEDNKAADENEGELTSESELDDDGTQ 130
           H LSS A A++ G+E   E+  SE  E +P +  + +    D++      E EL  D   
Sbjct: 69  HKLSSIADAKDKGDEVVREEELSESEEAVPVSGDVPEGVVDDDS----LFEPELGSD--N 128

Query: 131 NELDLPEVETELGEKISAKRAPSELFKAIWSAPGLSVPSALDKWVSEGKELSRADISLAM 190
           ++L++ E  ++ G K + KR  SEL+++I +    SV   L+KWV EGK+LS+A+++LA+
Sbjct: 129 DDLEIEEKHSKDGGKPTKKRGQSELYESIVAYK--SVKHVLEKWVKEGKDLSQAEVTLAI 188

Query: 191 LNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHRAEGYIAKIPKSFQ 250
            NLR+R+ +   LQ  EWL A+ Q EF + +YAS+LDL+AKVH L +AE ++  IP+S +
Sbjct: 189 HNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQLDLVAKVHSLQKAEIFLKDIPESSR 248

Query: 251 GEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLYKRLDKRKIADVLL 310
           GEV+YRTLLANCV+ ++V KAE++FNKMK+L+FP + FACNQLLLLY   D++KI+DVLL
Sbjct: 249 GEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPTSVFACNQLLLLYSMHDRKKISDVLL 308

Query: 311 LMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVDTMKAEGIELDVNTLSILAKHYASGG 370
           LME+EN+KPS  TY  LI++KGL+ D+ GME++V+T+K EGIELD    SILAK+Y   G
Sbjct: 309 LMERENIKPSRATYHFLINSKGLAGDITGMEKIVETIKEEGIELDPELQSILAKYYIRAG 368

Query: 371 LKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQMEDEVRRVWKLCEANPRIEECMAAI 430
           LK++A+ ++KE+E    +++ W CR LLPLY ++   D VRR+ +  + NPR + C++AI
Sbjct: 369 LKERAQDLMKEIEGKGLQQTPWVCRSLLPLYADIGDSDNVRRLSRFVDQNPRYDNCISAI 428

Query: 431 VAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMADSGCR 490
            AWGKLK V+EAE +F+R+++ +K      Y  ++++Y +NKML KG+DLVK+M ++G  
Sbjct: 429 KAWGKLKEVEEAEAVFERLVEKYKIFPMMPYFALMEIYTENKMLAKGRDLVKRMGNAGIA 488

Query: 491 IGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVHNAEK 550
           IGP TW A+VKLY++AGEV KA+  L +A + N+M+P+FT+YM IL++YA+RGDVHN EK
Sbjct: 489 IGPSTWHALVKLYIKAGEVGKAELILNRATKDNKMRPMFTTYMAILEEYAKRGDVHNTEK 548

Query: 551 MFHRMRLSGYVARFSPFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQIDAFR 610
           +F +M+ + Y A+   ++ ++ AYINAK PAYGM ERMKADNVFPNK+LA KLAQ++ F+
Sbjct: 549 VFMKMKRASYAAQLMQYETVLLAYINAKTPAYGMIERMKADNVFPNKSLAAKLAQVNPFK 608

Query: 611 KTAVSDLLD 619
           K  VS LLD
Sbjct: 609 KCPVSVLLD 609

[Close]

BLAST of CmoCh06G000200.1 vs. ExPASy Swiss-Prot
Match: Q940Q2 (Pentatricopeptide repeat-containing protein At1g07590, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g07590 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 3.0e-39
Identity = 113/456 (24.78%), Postives = 223/456 (48.90%), Query Frame = 0


Query: 163 GLSVPSALDKWVSEGKELSRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYA 222
           G++V SAL  W+ +G  +   D+  A+  LR+     +AL+  EW+         + +Y+
Sbjct: 78  GVTVGSALQSWMGDGFPVHGGDVYHAINRLRKLGRNKRALELMEWIIRERPYRLGELEYS 137

Query: 223 SRLDLIAKVHGLHRAEGYIAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEF 282
             L+   K+HG+ + E    ++P+ FQ E++Y  L+  C+    ++ A E   KM++L +
Sbjct: 138 YLLEFTVKLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKKMRELGY 197

Query: 283 PITAFACNQLLLLYKRLDKRK-IADVLLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQ 342
             +    N+L++      +RK IA  L LM+ +   P + TY IL+  +   +++ G+ +
Sbjct: 198 RTSHLVYNRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHNIDGVLK 257

Query: 343 VVDTMKAEGIELDVNTLSILAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRLLLPLYG 402
             D MK  G+E +  +  ILA  +A   L   A+A  +E+E   + ++     +L+ LYG
Sbjct: 258 AFDGMKKAGVEPNEVSYCILAMAHAVARLYTVAEAYTEEIEKSITGDNWSTLDILMILYG 317

Query: 403 ELQMEDEVRRVWKLCEA--NPRIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQ 462
            L  E E+ R W +     + R +  + A  A+ ++ N+  AEE++  +        ++Q
Sbjct: 318 RLGKEKELARTWNVIRGFHHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKGLKETEQ 377

Query: 463 YSTMLKVYADNKMLTKGKDLVKQMADSGCRIGPLTWD------AVVKLYVEAGEVEKADS 522
           ++++L VY  + ++ K   + ++M  +G +   +T+       A  KL  EA +  +   
Sbjct: 378 FNSLLSVYCKDGLIEKAIGVFREMTGNGFKPNSITYRHLALGCAKAKLMKEALKNIEMGL 437

Query: 523 FLQKAVQKNQMKPLFTSYMVILDQYARRGDVHNAEKMFHRMRLSGYVARFSPFQALIQAY 582
            L+ +       P   + + I++ +A +GDV N+EK+F  ++ + Y      + AL +AY
Sbjct: 438 NLKTSKSIGSSTPWLETTLSIIECFAEKGDVENSEKLFEEVKNAKYNRYAFVYNALFKAY 497

Query: 583 INAKAPAYGMKERMKADNVFPNKALAGKLAQIDAFR 610
           + AK     + +RM      P+      L  ++ ++
Sbjct: 498 VKAKVYDPNLFKRMVLGGARPDAESYSLLKLVEQYK 533

[Close]

BLAST of CmoCh06G000200.1 vs. ExPASy Swiss-Prot
Match: O22714 (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana OX=3702 GN=At1g60770 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 2.1e-37
Identity = 119/453 (26.27%), Postives = 221/453 (48.79%), Query Frame = 0


Query: 164 LSVPSALDKWVSEGKELSRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYAS 223
           + V   L++++   K + + ++   +  LR R ++  AL+ SE +E  G  + V  D A 
Sbjct: 37  VKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVMEERGMNKTVS-DQAI 96

Query: 224 RLDLIAKVHGLHRAEGYIAKIPKSFQGEVIYRTLLANCVVANNV-KKAEEVFNKMKDLEF 283
            LDL+AK   +   E Y   +P++ + E+ Y +LL NC     + +KAE + NKMK+L  
Sbjct: 97  HLDLVAKAREITAGENYFVDLPETSKTELTYGSLL-NCYCKELLTEKAEGLLNKMKELNI 156

Query: 284 PITAFACNQLLLLY-KRLDKRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQ 343
             ++ + N L+ LY K  +  K+  ++  ++ ENV P  +TY + + A   +ND+ G+E+
Sbjct: 157 TPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVER 216

Query: 344 VVDTMKAEG-IELDVNTLSILAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRLLLPLY 403
           V++ M  +G +  D  T S +A  Y   GL  KA+  L+E+E  +++      + L+ LY
Sbjct: 217 VIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLY 276

Query: 404 GELQMEDEVRRVWK-LCEANPRIEEC--MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSS 463
           G L    EV R+W+ L  A P+      +  I    KL ++  AE +F            
Sbjct: 277 GRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDI 336

Query: 464 KQYSTMLKVYADNKMLTKGKDLVKQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQK 523
           +  + ++  YA   ++ K  +L ++    G ++   TW+  +  YV++G++ +A   + K
Sbjct: 337 RIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSK 396

Query: 524 AV-----QKNQMKPLFTSYMVILDQYARRGDVHNAEKMFHRMRLSGYVARFSPFQALIQA 583
           AV        +  P   +   ++  + ++ DV+ AE +   ++          F+ LI+ 
Sbjct: 397 AVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRT 456

Query: 584 YINAKAPAYGMKERMKADNVFPNKALAGKLAQI 606
           Y  A      M+ R+K +NV  N+A    L ++
Sbjct: 457 YAAAGKSHPAMRRRLKMENVEVNEATKKLLDEV 487

[Close]

BLAST of CmoCh06G000200.1 vs. ExPASy TrEMBL
Match: A0A6J1F506 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111440885 PE=3 SV=1)

HSP 1 Score: 1204.5 bits (3115), Expect = 0.0e+00
Identity = 618/618 (100.00%), Postives = 618/618 (100.00%), Query Frame = 0


Query: 1   MWALRRASTPLRNQGYRIRTSYVFGKLEAPYSCDGNIVGSAIIPAISDRCISFERNNLAT 60
           MWALRRASTPLRNQGYRIRTSYVFGKLEAPYSCDGNIVGSAIIPAISDRCISFERNNLAT
Sbjct: 1   MWALRRASTPLRNQGYRIRTSYVFGKLEAPYSCDGNIVGSAIIPAISDRCISFERNNLAT 60

Query: 61  WRSSGLSISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSE 120
           WRSSGLSISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSE
Sbjct: 61  WRSSGLSISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSE 120

Query: 121 SELDDDGTQNELDLPEVETELGEKISAKRAPSELFKAIWSAPGLSVPSALDKWVSEGKEL 180
           SELDDDGTQNELDLPEVETELGEKISAKRAPSELFKAIWSAPGLSVPSALDKWVSEGKEL
Sbjct: 121 SELDDDGTQNELDLPEVETELGEKISAKRAPSELFKAIWSAPGLSVPSALDKWVSEGKEL 180

Query: 181 SRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHRAEGY 240
           SRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHRAEGY
Sbjct: 181 SRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHRAEGY 240

Query: 241 IAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLYKRLD 300
           IAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLYKRLD
Sbjct: 241 IAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLYKRLD 300

Query: 301 KRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVDTMKAEGIELDVNTLSI 360
           KRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVDTMKAEGIELDVNTLSI
Sbjct: 301 KRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVDTMKAEGIELDVNTLSI 360

Query: 361 LAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQMEDEVRRVWKLCEANP 420
           LAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQMEDEVRRVWKLCEANP
Sbjct: 361 LAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQMEDEVRRVWKLCEANP 420

Query: 421 RIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLV 480
           RIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLV
Sbjct: 421 RIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLV 480

Query: 481 KQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYAR 540
           KQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYAR
Sbjct: 481 KQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYAR 540

Query: 541 RGDVHNAEKMFHRMRLSGYVARFSPFQALIQAYINAKAPAYGMKERMKADNVFPNKALAG 600
           RGDVHNAEKMFHRMRLSGYVARFSPFQALIQAYINAKAPAYGMKERMKADNVFPNKALAG
Sbjct: 541 RGDVHNAEKMFHRMRLSGYVARFSPFQALIQAYINAKAPAYGMKERMKADNVFPNKALAG 600

Query: 601 KLAQIDAFRKTAVSDLLD 619
           KLAQIDAFRKTAVSDLLD
Sbjct: 601 KLAQIDAFRKTAVSDLLD 618

[Close]

BLAST of CmoCh06G000200.1 vs. ExPASy TrEMBL
Match: A0A6J1EZV3 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111440876 PE=3 SV=1)

HSP 1 Score: 1198.3 bits (3099), Expect = 0.0e+00
Identity = 614/618 (99.35%), Postives = 617/618 (99.84%), Query Frame = 0


Query: 1   MWALRRASTPLRNQGYRIRTSYVFGKLEAPYSCDGNIVGSAIIPAISDRCISFERNNLAT 60
           MWALRRASTPLRNQGYRIRTSYVFGKLEAPYSCDGNIVGSAIIPAISDRCISFERNNLAT
Sbjct: 1   MWALRRASTPLRNQGYRIRTSYVFGKLEAPYSCDGNIVGSAIIPAISDRCISFERNNLAT 60

Query: 61  WRSSGLSISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSE 120
           WRSSGLSISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSE
Sbjct: 61  WRSSGLSISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSE 120

Query: 121 SELDDDGTQNELDLPEVETELGEKISAKRAPSELFKAIWSAPGLSVPSALDKWVSEGKEL 180
           SELDDDGTQNELDLPEVETELGEKISAKRAPSELFKAIWSAPGLSVPSALDKWVSEGKEL
Sbjct: 121 SELDDDGTQNELDLPEVETELGEKISAKRAPSELFKAIWSAPGLSVPSALDKWVSEGKEL 180

Query: 181 SRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHRAEGY 240
           SRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHRAEGY
Sbjct: 181 SRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHRAEGY 240

Query: 241 IAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLYKRLD 300
           IAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLYKRLD
Sbjct: 241 IAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLYKRLD 300

Query: 301 KRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVDTMKAEGIELDVNTLSI 360
           KRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVDTMKAEGIELDVNTLSI
Sbjct: 301 KRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVDTMKAEGIELDVNTLSI 360

Query: 361 LAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQMEDEVRRVWKLCEANP 420
           LAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQMEDEVRRVWK+CEANP
Sbjct: 361 LAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQMEDEVRRVWKICEANP 420

Query: 421 RIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLV 480
           RIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLV
Sbjct: 421 RIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLV 480

Query: 481 KQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYAR 540
           KQMADSGCRIGPLTW+AVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYM+ILDQYAR
Sbjct: 481 KQMADSGCRIGPLTWNAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMIILDQYAR 540

Query: 541 RGDVHNAEKMFHRMRLSGYVARFSPFQALIQAYINAKAPAYGMKERMKADNVFPNKALAG 600
           RGDVHNAEKMFHRMRLSGYVARFS FQALIQAYINAKAPAYGMKERMKADNVFPNKALAG
Sbjct: 541 RGDVHNAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAG 600

Query: 601 KLAQIDAFRKTAVSDLLD 619
           KLAQIDAFRKTAVSDLLD
Sbjct: 601 KLAQIDAFRKTAVSDLLD 618

[Close]

BLAST of CmoCh06G000200.1 vs. ExPASy TrEMBL
Match: A0A6J1I524 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111469986 PE=3 SV=1)

HSP 1 Score: 1168.7 bits (3022), Expect = 0.0e+00
Identity = 603/622 (96.95%), Postives = 610/622 (98.07%), Query Frame = 0


Query: 1   MWALRRASTPLRNQGYRIRTSYVFGKLEAPYSCDGNIVGSAIIPAISDRCISFERNNLAT 60
           MWALRRASTPLRNQGYRIRTSYVFGKLEAPYS +GNIV SAIIPAISD CISFERN+LAT
Sbjct: 1   MWALRRASTPLRNQGYRIRTSYVFGKLEAPYSWEGNIVASAIIPAISDGCISFERNSLAT 60

Query: 61  WRSSGLSISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSE 120
           WR SGLSISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSE
Sbjct: 61  WRPSGLSISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSE 120

Query: 121 SELDDD----GTQNELDLPEVETELGEKISAKRAPSELFKAIWSAPGLSVPSALDKWVSE 180
           SELDDD    GTQNELDLPE+ETEL EKI AKRAPSELFKAIWSAPG SVPSALDKWVSE
Sbjct: 121 SELDDDTVDAGTQNELDLPELETELAEKIPAKRAPSELFKAIWSAPGSSVPSALDKWVSE 180

Query: 181 GKELSRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHR 240
           GKELSRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHR
Sbjct: 181 GKELSRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHR 240

Query: 241 AEGYIAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLY 300
           AEGYIAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLY
Sbjct: 241 AEGYIAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLY 300

Query: 301 KRLDKRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVDTMKAEGIELDVN 360
           KRLDKRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDM+GMEQVVDTMKAEGIELDV+
Sbjct: 301 KRLDKRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMMGMEQVVDTMKAEGIELDVH 360

Query: 361 TLSILAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQMEDEVRRVWKLC 420
           TLSILAKHYASGGLKDKAKAILKEMEDVSSKESRWPCR+LLPLYGELQMEDEVRRVWK+C
Sbjct: 361 TLSILAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRILLPLYGELQMEDEVRRVWKIC 420

Query: 421 EANPRIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKG 480
           EANPRIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKG
Sbjct: 421 EANPRIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKG 480

Query: 481 KDLVKQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILD 540
           KDLVKQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILD
Sbjct: 481 KDLVKQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILD 540

Query: 541 QYARRGDVHNAEKMFHRMRLSGYVARFSPFQALIQAYINAKAPAYGMKERMKADNVFPNK 600
           QYARRGDVHNAEKMFHRMRLSGYVARFS FQALIQAYINAKAPAYGMKERMKADNVFPNK
Sbjct: 541 QYARRGDVHNAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNK 600

Query: 601 ALAGKLAQIDAFRKTAVSDLLD 619
           ALAGKLAQIDAFRKTAVSDLLD
Sbjct: 601 ALAGKLAQIDAFRKTAVSDLLD 622

[Close]

BLAST of CmoCh06G000200.1 vs. ExPASy TrEMBL
Match: A0A6J1I2N1 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111469987 PE=3 SV=1)

HSP 1 Score: 1161.7 bits (3004), Expect = 0.0e+00
Identity = 599/622 (96.30%), Postives = 609/622 (97.91%), Query Frame = 0


Query: 1   MWALRRASTPLRNQGYRIRTSYVFGKLEAPYSCDGNIVGSAIIPAISDRCISFERNNLAT 60
           MWALRRASTPLRNQGYRIRTSYVFGKLEAPYS +GNIV SAIIPAISD CISFERN+LAT
Sbjct: 1   MWALRRASTPLRNQGYRIRTSYVFGKLEAPYSWEGNIVASAIIPAISDGCISFERNSLAT 60

Query: 61  WRSSGLSISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSE 120
           WR SGLSISSHGLSSQAGAENSGEEDDLEDGFSELETLPST+ALEDNKAADENEGELTSE
Sbjct: 61  WRPSGLSISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTDALEDNKAADENEGELTSE 120

Query: 121 SELDDD----GTQNELDLPEVETELGEKISAKRAPSELFKAIWSAPGLSVPSALDKWVSE 180
           SELDDD    GTQNELDLPE+ETEL EKI AKRAPSELFKAIWSAPG SVPSALDKWVSE
Sbjct: 121 SELDDDTVDAGTQNELDLPELETELAEKIPAKRAPSELFKAIWSAPGSSVPSALDKWVSE 180

Query: 181 GKELSRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHR 240
           GKELSRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHR
Sbjct: 181 GKELSRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHR 240

Query: 241 AEGYIAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLY 300
           AEGYIAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLY
Sbjct: 241 AEGYIAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLY 300

Query: 301 KRLDKRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVDTMKAEGIELDVN 360
           KRLDKRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDM+GMEQVVDTMKAEGIELDVN
Sbjct: 301 KRLDKRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMMGMEQVVDTMKAEGIELDVN 360

Query: 361 TLSILAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQMEDEVRRVWKLC 420
           TLSILAKHYASGGL DKAKAILKEMEDVSSKESRWPCR+LLPLYGELQ+EDEVRRVWK+C
Sbjct: 361 TLSILAKHYASGGLIDKAKAILKEMEDVSSKESRWPCRILLPLYGELQIEDEVRRVWKIC 420

Query: 421 EANPRIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKG 480
           EANPR++ECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKG
Sbjct: 421 EANPRMDECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKG 480

Query: 481 KDLVKQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILD 540
           KDLVKQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILD
Sbjct: 481 KDLVKQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILD 540

Query: 541 QYARRGDVHNAEKMFHRMRLSGYVARFSPFQALIQAYINAKAPAYGMKERMKADNVFPNK 600
           QYARRGDVHNAEKMFHRMRLSGYVARFS FQALIQAYINAKAPAYGMKERMKADNVFPNK
Sbjct: 541 QYARRGDVHNAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNK 600

Query: 601 ALAGKLAQIDAFRKTAVSDLLD 619
           ALAGKLAQIDAFRKTAVSDLLD
Sbjct: 601 ALAGKLAQIDAFRKTAVSDLLD 622

[Close]

BLAST of CmoCh06G000200.1 vs. ExPASy TrEMBL
Match: A0A6J1I643 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469985 PE=3 SV=1)

HSP 1 Score: 1140.2 bits (2948), Expect = 0.0e+00
Identity = 589/611 (96.40%), Postives = 597/611 (97.71%), Query Frame = 0


Query: 12  RNQGYRIRTSYVFGKLEAPYSCDGNIVGSAIIPAISDRCISFERNNLATWRSSGLSISSH 71
           RNQGYRIRTSYVFG LEAPYS +GNIV SAIIPAISD CISFERN+LATWR SGLSISSH
Sbjct: 60  RNQGYRIRTSYVFGTLEAPYSWEGNIVASAIIPAISDGCISFERNSLATWRPSGLSISSH 119

Query: 72  GLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSESELDDD----G 131
           GLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSESELDDD    G
Sbjct: 120 GLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSESELDDDTVDGG 179

Query: 132 TQNELDLPEVETELGEKISAKRAPSELFKAIWSAPGLSVPSALDKWVSEGKELSRADISL 191
           TQNELDLPE+ETEL EKI AKRAPSELFKAIWSAPG SVPSALDKWVSEGKELSRADISL
Sbjct: 180 TQNELDLPELETELAEKIPAKRAPSELFKAIWSAPGSSVPSALDKWVSEGKELSRADISL 239

Query: 192 AMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHRAEGYIAKIPKS 251
           AMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHRAEGYIAKIPKS
Sbjct: 240 AMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHRAEGYIAKIPKS 299

Query: 252 FQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLYKRLDKRKIADV 311
           FQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLYKRLDKRKIADV
Sbjct: 300 FQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLYKRLDKRKIADV 359

Query: 312 LLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVDTMKAEGIELDVNTLSILAKHYAS 371
           LLLMEKENVKPSLFTYKILIDAKGLSNDM+GMEQVVDTMKAEGIELDVNTLSILAKHYAS
Sbjct: 360 LLLMEKENVKPSLFTYKILIDAKGLSNDMMGMEQVVDTMKAEGIELDVNTLSILAKHYAS 419

Query: 372 GGLKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQMEDEVRRVWKLCEANPRIEECMA 431
           GGL DKAKAILKEMEDVSSKESRWPCR+LLPLYGELQMEDEVRRVWK+CEANPR++ECMA
Sbjct: 420 GGLIDKAKAILKEMEDVSSKESRWPCRILLPLYGELQMEDEVRRVWKICEANPRMDECMA 479

Query: 432 AIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMADSG 491
           AIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMADSG
Sbjct: 480 AIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMADSG 539

Query: 492 CRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVHNA 551
           CRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVHNA
Sbjct: 540 CRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVHNA 599

Query: 552 EKMFHRMRLSGYVARFSPFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQIDA 611
           EKMFHRMRLSGYVARFS FQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQIDA
Sbjct: 600 EKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQIDA 659

Query: 612 FRKTAVSDLLD 619
           FRKTAVSDLLD
Sbjct: 660 FRKTAVSDLLD 670

[Close]

BLAST of CmoCh06G000200.1 vs. TAIR 10
Match: AT1G80270.1 (PENTATRICOPEPTIDE REPEAT 596 )

HSP 1 Score: 644.4 bits (1661), Expect = 9.1e-185
Identity = 329/574 (57.32%), Postives = 444/574 (77.35%), Query Frame = 0


Query: 52  SFERNNLATWRSSGL-------SISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTNAL 111
           SF+ N++A+ +   +       S+S+  LSS AG ++  EEDDLEDGFSELE    + + 
Sbjct: 34  SFDSNSIASTKREAVPRFYEISSLSNRALSSSAGTKSDQEEDDLEDGFSELE---GSKSG 93

Query: 112 EDNKAADENEGELTSESELDDDGTQNELDLPEVETELGEKISAKRAPSELFKAIWSAPGL 171
           + + ++DE+EG+L+++ E      + ELDL  +ET++  K + ++  SELFK I SAPGL
Sbjct: 94  QGSTSSDEDEGKLSADEE-----EEEELDL--IETDVSRK-TVEKKQSELFKTIVSAPGL 153

Query: 172 SVPSALDKWVSEGKELSRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASR 231
           S+ SALDKWV EG E++R +I+ AML LRRRRM+G+ALQ SEWLEA+ ++E  +RDYASR
Sbjct: 154 SIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDYASR 213

Query: 232 LDLIAKVHGLHRAEGYIAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPI 291
           LDL  K+ GL + E  + KIPKSF+GEV+YRTLLANCV A NVKK+E VFNKMKDL FP+
Sbjct: 214 LDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLGFPL 273

Query: 292 TAFACNQLLLLYKRLDKRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVD 351
           + F C+Q+LLL+KR+D++KIADVLLLMEKEN+KPSL TYKILID KG +ND+ GMEQ+++
Sbjct: 274 SGFTCDQMLLLHKRIDRKKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISGMEQILE 333

Query: 352 TMKAEGIELDVNTLSILAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQ 411
           TMK EG+ELD  T ++ A+HY+  GLKDKA+ +LKEME  S + +R   + LL +Y  L 
Sbjct: 334 TMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSIYASLG 393

Query: 412 MEDEVRRVWKLCEANPRIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTML 471
            EDEV+R+WK+CE+ P  EE +AAI A+GKL  VQEAE IF++++K  ++ SS  YS +L
Sbjct: 394 REDEVKRIWKICESKPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSSTYSVLL 453

Query: 472 KVYADNKMLTKGKDLVKQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQM 531
           +VY D+KML+KGKDLVK+MA+SGCRI   TWDA++KLYVEAGEVEKADS L KA +++  
Sbjct: 454 RVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKASKQSHT 513

Query: 532 KPLFTSYMVILDQYARRGDVHNAEKMFHRMRLSGYVARFSPFQALIQAYINAKAPAYGMK 591
           K +  S+M I+D+Y++RGDVHN EK+F +MR +GY +R   FQAL+QAYINAK+PAYGM+
Sbjct: 514 KLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYINAKSPAYGMR 573

Query: 592 ERMKADNVFPNKALAGKLAQIDAFRKTAVSDLLD 619
           +R+KADN+FPNK++A +LAQ D F+KTA+SD+LD
Sbjct: 574 DRLKADNIFPNKSMAAQLAQGDPFKKTAISDILD 596

[Close]

BLAST of CmoCh06G000200.1 vs. TAIR 10
Match: AT1G80270.2 (PENTATRICOPEPTIDE REPEAT 596 )

HSP 1 Score: 644.4 bits (1661), Expect = 9.1e-185
Identity = 329/574 (57.32%), Postives = 444/574 (77.35%), Query Frame = 0


Query: 52  SFERNNLATWRSSGL-------SISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTNAL 111
           SF+ N++A+ +   +       S+S+  LSS AG ++  EEDDLEDGFSELE    + + 
Sbjct: 34  SFDSNSIASTKREAVPRFYEISSLSNRALSSSAGTKSDQEEDDLEDGFSELE---GSKSG 93

Query: 112 EDNKAADENEGELTSESELDDDGTQNELDLPEVETELGEKISAKRAPSELFKAIWSAPGL 171
           + + ++DE+EG+L+++ E      + ELDL  +ET++  K + ++  SELFK I SAPGL
Sbjct: 94  QGSTSSDEDEGKLSADEE-----EEEELDL--IETDVSRK-TVEKKQSELFKTIVSAPGL 153

Query: 172 SVPSALDKWVSEGKELSRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASR 231
           S+ SALDKWV EG E++R +I+ AML LRRRRM+G+ALQ SEWLEA+ ++E  +RDYASR
Sbjct: 154 SIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDYASR 213

Query: 232 LDLIAKVHGLHRAEGYIAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPI 291
           LDL  K+ GL + E  + KIPKSF+GEV+YRTLLANCV A NVKK+E VFNKMKDL FP+
Sbjct: 214 LDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLGFPL 273

Query: 292 TAFACNQLLLLYKRLDKRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVD 351
           + F C+Q+LLL+KR+D++KIADVLLLMEKEN+KPSL TYKILID KG +ND+ GMEQ+++
Sbjct: 274 SGFTCDQMLLLHKRIDRKKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISGMEQILE 333

Query: 352 TMKAEGIELDVNTLSILAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQ 411
           TMK EG+ELD  T ++ A+HY+  GLKDKA+ +LKEME  S + +R   + LL +Y  L 
Sbjct: 334 TMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSIYASLG 393

Query: 412 MEDEVRRVWKLCEANPRIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTML 471
            EDEV+R+WK+CE+ P  EE +AAI A+GKL  VQEAE IF++++K  ++ SS  YS +L
Sbjct: 394 REDEVKRIWKICESKPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSSTYSVLL 453

Query: 472 KVYADNKMLTKGKDLVKQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQM 531
           +VY D+KML+KGKDLVK+MA+SGCRI   TWDA++KLYVEAGEVEKADS L KA +++  
Sbjct: 454 RVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKASKQSHT 513

Query: 532 KPLFTSYMVILDQYARRGDVHNAEKMFHRMRLSGYVARFSPFQALIQAYINAKAPAYGMK 591
           K +  S+M I+D+Y++RGDVHN EK+F +MR +GY +R   FQAL+QAYINAK+PAYGM+
Sbjct: 514 KLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYINAKSPAYGMR 573

Query: 592 ERMKADNVFPNKALAGKLAQIDAFRKTAVSDLLD 619
           +R+KADN+FPNK++A +LAQ D F+KTA+SD+LD
Sbjct: 574 DRLKADNIFPNKSMAAQLAQGDPFKKTAISDILD 596

[Close]

BLAST of CmoCh06G000200.1 vs. TAIR 10
Match: AT1G80270.3 (PENTATRICOPEPTIDE REPEAT 596 )

HSP 1 Score: 644.4 bits (1661), Expect = 9.1e-185
Identity = 329/574 (57.32%), Postives = 444/574 (77.35%), Query Frame = 0


Query: 52  SFERNNLATWRSSGL-------SISSHGLSSQAGAENSGEEDDLEDGFSELETLPSTNAL 111
           SF+ N++A+ +   +       S+S+  LSS AG ++  EEDDLEDGFSELE    + + 
Sbjct: 34  SFDSNSIASTKREAVPRFYEISSLSNRALSSSAGTKSDQEEDDLEDGFSELE---GSKSG 93

Query: 112 EDNKAADENEGELTSESELDDDGTQNELDLPEVETELGEKISAKRAPSELFKAIWSAPGL 171
           + + ++DE+EG+L+++ E      + ELDL  +ET++  K + ++  SELFK I SAPGL
Sbjct: 94  QGSTSSDEDEGKLSADEE-----EEEELDL--IETDVSRK-TVEKKQSELFKTIVSAPGL 153

Query: 172 SVPSALDKWVSEGKELSRADISLAMLNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASR 231
           S+ SALDKWV EG E++R +I+ AML LRRRRM+G+ALQ SEWLEA+ ++E  +RDYASR
Sbjct: 154 SIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDYASR 213

Query: 232 LDLIAKVHGLHRAEGYIAKIPKSFQGEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPI 291
           LDL  K+ GL + E  + KIPKSF+GEV+YRTLLANCV A NVKK+E VFNKMKDL FP+
Sbjct: 214 LDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLGFPL 273

Query: 292 TAFACNQLLLLYKRLDKRKIADVLLLMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVD 351
           + F C+Q+LLL+KR+D++KIADVLLLMEKEN+KPSL TYKILID KG +ND+ GMEQ+++
Sbjct: 274 SGFTCDQMLLLHKRIDRKKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISGMEQILE 333

Query: 352 TMKAEGIELDVNTLSILAKHYASGGLKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQ 411
           TMK EG+ELD  T ++ A+HY+  GLKDKA+ +LKEME  S + +R   + LL +Y  L 
Sbjct: 334 TMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSIYASLG 393

Query: 412 MEDEVRRVWKLCEANPRIEECMAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTML 471
            EDEV+R+WK+CE+ P  EE +AAI A+GKL  VQEAE IF++++K  ++ SS  YS +L
Sbjct: 394 REDEVKRIWKICESKPYFEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSSTYSVLL 453

Query: 472 KVYADNKMLTKGKDLVKQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQM 531
           +VY D+KML+KGKDLVK+MA+SGCRI   TWDA++KLYVEAGEVEKADS L KA +++  
Sbjct: 454 RVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKASKQSHT 513

Query: 532 KPLFTSYMVILDQYARRGDVHNAEKMFHRMRLSGYVARFSPFQALIQAYINAKAPAYGMK 591
           K +  S+M I+D+Y++RGDVHN EK+F +MR +GY +R   FQAL+QAYINAK+PAYGM+
Sbjct: 514 KLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYINAKSPAYGMR 573

Query: 592 ERMKADNVFPNKALAGKLAQIDAFRKTAVSDLLD 619
           +R+KADN+FPNK++A +LAQ D F+KTA+SD+LD
Sbjct: 574 DRLKADNIFPNKSMAAQLAQGDPFKKTAISDILD 596

[Close]

BLAST of CmoCh06G000200.1 vs. TAIR 10
Match: AT1G15480.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 640.2 bits (1650), Expect = 1.7e-183
Identity = 337/608 (55.43%), Postives = 444/608 (73.03%), Query Frame = 0


Query: 12  RNQGYRI-RTSYVFGKLEAPYSCDGNIVGSAIIPAISDRCISFERNNLATWRSSGLSISS 71
           R+Q  R+   + V+ KL+ P       + S  +  I D+  +  R    +W S   S   
Sbjct: 10  RSQSLRLGACNAVYSKLDIPLGERNIAIESNAL--IHDKHEALPRFYELSWSS---STGR 69

Query: 72  HGLSSQAGAENSGEEDDLEDGFSELETLPSTNALEDNKAADENEGELTSESELDDDGTQN 131
             LSS AGA+ +G++DDLED   +L T        D  ++D  +GE  S  E D +G + 
Sbjct: 70  RSLSSDAGAKTTGDDDDLEDKNVDLAT-------PDETSSDSEDGEEFSGDEGDIEGAEL 129

Query: 132 ELDLPEVETELGEKISAKRAPSELFKAIWSAPGLSVPSALDKWVSEGKELSRADISLAML 191
           EL +PE            + PSE+FKAI S  GLSV SALDKWV +GK+ +R +   AML
Sbjct: 130 ELHVPE-----------SKRPSEMFKAIVSVSGLSVGSALDKWVEQGKDTNRKEFESAML 189

Query: 192 NLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHRAEGYIAKIPKSFQG 251
            LR+RRMFG+ALQ +EWL+ + Q E  +RDYA RLDLI+KV G ++ E YI  IP+SF+G
Sbjct: 190 QLRKRRMFGRALQMTEWLDENKQFEMEERDYACRLDLISKVRGWYKGEAYIKTIPESFRG 249

Query: 252 EVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLYKRLDKRKIADVLLL 311
           E++YRTLLAN V  +NV+ AE VFNKMKDL FP++ F CNQ+L+LYKR+DK+KIADVLLL
Sbjct: 250 ELVYRTLLANHVATSNVRTAEAVFNKMKDLGFPLSTFTCNQMLILYKRVDKKKIADVLLL 309

Query: 312 MEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVDTMKAEGIELDVNTLSILAKHYASGGL 371
           +EKEN+KP+L TYKILID KG SND+ GMEQ+V+TMK+EG+ELD+   +++A+HYAS GL
Sbjct: 310 LEKENLKPNLNTYKILIDTKGSSNDITGMEQIVETMKSEGVELDLRARALIARHYASAGL 369

Query: 372 KDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQMEDEVRRVWKLCEANPRIEECMAAIV 431
           K+KA+ +LKEME  S +E+R  C+ LL +YG LQ EDEVRRVWK+CE NPR  E +AAI+
Sbjct: 370 KEKAEKVLKEMEGESLEENRHMCKDLLSVYGYLQREDEVRRVWKICEENPRYNEVLAAIL 429

Query: 432 AWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMADSGCRI 491
           A+GK+  V++AE +F++VLK   ++SS  YS +L+VY D+KM+++GKDLVKQM+DSGC I
Sbjct: 430 AFGKIDKVKDAEAVFEKVLKMSHRVSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNI 489

Query: 492 GPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVHNAEKM 551
           G LTWDAV+KLYVEAGEVEKA+S L KA+Q  Q+KPL +S+M ++ +Y RRGDVHN EK+
Sbjct: 490 GALTWDAVIKLYVEAGEVEKAESSLSKAIQSKQIKPLMSSFMYLMHEYVRRGDVHNTEKI 549

Query: 552 FHRMRLSGYVARFSPFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQIDAFRK 611
           F RM+ +GY +RF  +Q LIQAY+NAKAPAYGMKERMKADN+FPNK LA +LA+ D F+K
Sbjct: 550 FQRMKQAGYQSRFWAYQTLIQAYVNAKAPAYGMKERMKADNIFPNKRLAAQLAKADPFKK 594

Query: 612 TAVSDLLD 619
           T +SDLLD
Sbjct: 610 TPLSDLLD 594

[Close]

BLAST of CmoCh06G000200.1 vs. TAIR 10
Match: AT3G15590.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 535.0 bits (1377), Expect = 7.8e-152
Identity = 275/549 (50.09%), Postives = 398/549 (72.50%), Query Frame = 0


Query: 71  HGLSSQAGAENSGEEDDLEDGFSEL-ETLPSTNALEDNKAADENEGELTSESELDDDGTQ 130
           H LSS A A++ G+E   E+  SE  E +P +  + +    D++      E EL  D   
Sbjct: 69  HKLSSIADAKDKGDEVVREEELSESEEAVPVSGDVPEGVVDDDS----LFEPELGSD--N 128

Query: 131 NELDLPEVETELGEKISAKRAPSELFKAIWSAPGLSVPSALDKWVSEGKELSRADISLAM 190
           ++L++ E  ++ G K + KR  SEL+++I +    SV   L+KWV EGK+LS+A+++LA+
Sbjct: 129 DDLEIEEKHSKDGGKPTKKRGQSELYESIVAYK--SVKHVLEKWVKEGKDLSQAEVTLAI 188

Query: 191 LNLRRRRMFGKALQFSEWLEASGQLEFVDRDYASRLDLIAKVHGLHRAEGYIAKIPKSFQ 250
            NLR+R+ +   LQ  EWL A+ Q EF + +YAS+LDL+AKVH L +AE ++  IP+S +
Sbjct: 189 HNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQLDLVAKVHSLQKAEIFLKDIPESSR 248

Query: 251 GEVIYRTLLANCVVANNVKKAEEVFNKMKDLEFPITAFACNQLLLLYKRLDKRKIADVLL 310
           GEV+YRTLLANCV+ ++V KAE++FNKMK+L+FP + FACNQLLLLY   D++KI+DVLL
Sbjct: 249 GEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPTSVFACNQLLLLYSMHDRKKISDVLL 308

Query: 311 LMEKENVKPSLFTYKILIDAKGLSNDMVGMEQVVDTMKAEGIELDVNTLSILAKHYASGG 370
           LME+EN+KPS  TY  LI++KGL+ D+ GME++V+T+K EGIELD    SILAK+Y   G
Sbjct: 309 LMERENIKPSRATYHFLINSKGLAGDITGMEKIVETIKEEGIELDPELQSILAKYYIRAG 368

Query: 371 LKDKAKAILKEMEDVSSKESRWPCRLLLPLYGELQMEDEVRRVWKLCEANPRIEECMAAI 430
           LK++A+ ++KE+E    +++ W CR LLPLY ++   D VRR+ +  + NPR + C++AI
Sbjct: 369 LKERAQDLMKEIEGKGLQQTPWVCRSLLPLYADIGDSDNVRRLSRFVDQNPRYDNCISAI 428

Query: 431 VAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMADSGCR 490
            AWGKLK V+EAE +F+R+++ +K      Y  ++++Y +NKML KG+DLVK+M ++G  
Sbjct: 429 KAWGKLKEVEEAEAVFERLVEKYKIFPMMPYFALMEIYTENKMLAKGRDLVKRMGNAGIA 488

Query: 491 IGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVHNAEK 550
           IGP TW A+VKLY++AGEV KA+  L +A + N+M+P+FT+YM IL++YA+RGDVHN EK
Sbjct: 489 IGPSTWHALVKLYIKAGEVGKAELILNRATKDNKMRPMFTTYMAILEEYAKRGDVHNTEK 548

Query: 551 MFHRMRLSGYVARFSPFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQIDAFR 610
           +F +M+ + Y A+   ++ ++ AYINAK PAYGM ERMKADNVFPNK+LA KLAQ++ F+
Sbjct: 549 VFMKMKRASYAAQLMQYETVLLAYINAKTPAYGMIERMKADNVFPNKSLAAKLAQVNPFK 608

Query: 611 KTAVSDLLD 619
           K  VS LLD
Sbjct: 609 KCPVSVLLD 609

The following BLAST results are available for this feature:

BLAST of CmoCh06G000200.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C977	1.3e-183	57.32	Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidop...	[more]
Q9XI21	2.4e-182	55.43	Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidop...	[more]
Q9LRP6	1.1e-150	50.09	Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidop...	[more]
Q940Q2	3.0e-39	24.78	Pentatricopeptide repeat-containing protein At1g07590, mitochondrial OS=Arabidop...	[more]
O22714	2.1e-37	26.27	Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmoCh06G000200.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F506	0.0e+00	100.00	pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like OS=Cuc...	[more]
A0A6J1EZV3	0.0e+00	99.35	pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like OS=Cuc...	[more]
A0A6J1I524	0.0e+00	96.95	pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like OS=Cuc...	[more]
A0A6J1I2N1	0.0e+00	96.30	pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like OS=Cuc...	[more]
A0A6J1I643	0.0e+00	96.40	pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like isofor...	[more]

BLAST of CmoCh06G000200.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80270.1	9.1e-185	57.32	PENTATRICOPEPTIDE REPEAT 596	[more]
AT1G80270.2	9.1e-185	57.32	PENTATRICOPEPTIDE REPEAT 596	[more]
AT1G80270.3	9.1e-185	57.32	PENTATRICOPEPTIDE REPEAT 596	[more]
AT1G15480.1	1.7e-183	55.43	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G15590.1	7.8e-152	50.09	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 250..426 e-value: 3.6E-23 score: 84.4 coord: 427..614 e-value: 4.2E-25 score: 90.8
IPR033443	Pentacotripeptide-repeat region of PRORP	PFAM	PF17177	PPR_long	coord: 434..572 e-value: 2.4E-6 score: 27.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 252..280 e-value: 0.0043 score: 17.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 286..329 e-value: 3.8E-4 score: 20.5 coord: 342..384 e-value: 0.0056 score: 16.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 460..489 e-value: 5.0E-4 score: 18.1 coord: 252..283 e-value: 1.3E-4 score: 19.9 coord: 530..560 e-value: 2.4E-4 score: 19.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 527..561 score: 8.834866
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 456..490 score: 8.856788
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..130
None	No IPR available	PANTHER	PTHR45717:SF15	OS01G0280400 PROTEIN	coord: 30..618
None	No IPR available	PANTHER	PTHR45717	OS12G0527900 PROTEIN	coord: 30..618

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G000200	CmoCh06G000200	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000200.1:exon:9527	CmoCh06G000200.1:exon:9527	exon
CmoCh06G000200.1:exon:9528	CmoCh06G000200.1:exon:9528	exon
CmoCh06G000200.1:exon:9529	CmoCh06G000200.1:exon:9529	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000200.1:five_prime_utr	CmoCh06G000200.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000200.1:cds	CmoCh06G000200.1:cds	CDS
CmoCh06G000200.1:cds	CmoCh06G000200.1:cds_2	CDS
CmoCh06G000200.1:cds	CmoCh06G000200.1:cds_3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000200.1:three_prime_utr	CmoCh06G000200.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000200.1	CmoCh06G000200.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding